Search Results (286)

Soil degradation resulting from intensive agricultural practices, the excessive use of agrochemicals, and climate-induced stresses has significantly impaired soil fertility, disrupted microbial diversity, and reduced crop productivity. Plant growth-promoting bacteria (PGPB) represent a sustainable biological approach to restoring degraded soils by modulating plant physiology and soil function through diverse molecular mechanisms. PGPB synthesizes indole-3-acetic acid (IAA) to stimulate root development and nutrient uptake and produce ACC deaminase, which lowers ethylene accumulation under stress, mitigating growth inhibition. They also enhance nutrient availability by releasing phosphate-solubilizing enzymes and siderophores that improve iron acquisition. In parallel, PGPB activates jasmonate and salicylate pathways, priming a systemic resistance to biotic and abiotic stress. Through quorum sensing, biofilm formation, and biosynthetic gene clusters encoding antibiotics, lipopeptides, and VOCs, PGPB strengthen rhizosphere colonization and suppress pathogens. These interactions contribute to microbial community recovery, an improved soil structure, and enhanced nutrient cycling. This review synthesizes current evidence on the molecular and physiological mechanisms by which PGPB enhance soil restoration in degraded agroecosystems, highlighting their role beyond biofertilization as key agents in ecological rehabilitation. It examines advances in nutrient mobilization, stress mitigation, and signaling pathways, based on the literature retrieved from major scientific databases, focusing on studies published in the last decade. Full article

Soil salinization poses a significant constraint to agricultural productivity. However, certain plant growth-promoting bacteria (PGPB) can mitigate salinity stress and enhance crop performance. In this study, a bacterial isolate, R-18, isolated from saline-alkali soil in Ningxia, China, was identified as Enterobacter bugandensis based on 16S rRNA gene sequencing. The isolate was characterized for its morphological, biochemical, and plant growth-promoting traits and was evaluated for its potential to alleviate NaCl-induced stress in maize (Zea mays L.) under hydroponic conditions. Isolate R-18 exhibited halotolerance, surviving at NaCl concentrations ranging from 2.0% to 10.0%, and alkaliphilic adaptation, growing at pH 8.0–11.0. Biochemical assays confirmed it as a Gram-negative bacterium, displaying positive reactions in the Voges–Proskauer (V–P) tests, catalase activity, citrate utilization, fluorescent pigment production, starch hydrolysis, gelatin liquefaction, and ammonia production, while testing negative for the methyl red and cellulose hydrolysis. Notably, isolate R-18 demonstrated multiple plant growth-promoting attributes, including nitrogen fixation, phosphate and potassium solubilization, ACC deaminase activity, and indole-3-acetic acid (IAA) biosynthesis. Under 100 mM NaCl stress, inoculation with isolate R-18 significantly enhanced maize growth, increasing plant height, stem dry weight, root fresh weight, and root dry weight by 20.64%, 47.06%, 34.52%, and 31.25%, respectively. Furthermore, isolate R-18 improved ion homeostasis by elevating the K⁺/Na⁺ ratio in maize tissues. Physiological analyses revealed increased chlorophyll and proline content, alongside reduced malondialdehyde (MDA) levels, indicating mitigated oxidative damage. Antioxidant enzyme activity was modulated, with decreased superoxide dismutase (SOD) and peroxidase (POD) activities but increased catalase (CAT) activity. These findings demonstrated that Enterobacter bugandensis R-18 effectively alleviated NaCl-induced growth inhibition in maize by enhancing osmotic adjustment, reducing oxidative stress, and improving ion balance. Full article

This study analyzed the heavy metal tolerance and chromium reduction and the potential of plant growth to promote Rhizobium sp. OS-1. By genetic makeup, the Rhizobium strain is nitrogen-fixing and phosphate-solubilizing in metal-contaminated agricultural soil. Among the Rhizobium group, bacterial strain OS-1 showed a significant tolerance to heavy metals, particularly chromium (900 µg/mL), zinc (700 µg/mL), and copper. In the initial investigation, the bacteria strains were morphologically short-rod, Gram-negative, appeared as light pink colonies on media plates, and were biochemically positive for catalase reaction and the ability to ferment glucose, sucrose, and mannitol. Further, bacterial genomic DNA was isolated and amplified with the 16SrRNA gene and sequencing; the obtained 16S rRNA sequence achieved accession no. HE663761.1 from the NCBI GenBank, and it was confirmed that the strain belongs to the Rhizobium genus by phylogenetic analysis. The strain’s performance was best for high hexavalent chromium [Cr(VI)] reduction at 7–8 pH and a temperature of 30 °C, resulting in a total decrease in 96 h. Additionally, the adsorption isotherm Freundlich and Langmuir models fit best for this study, revealing a large biosorption capacity, with Cr(VI) having the highest affinity. Further bacterial chromium reduction was confirmed by an enzymatic test of nitro reductase and chromate reductase activity in bacterial extract. Further, from the metal biosorption study, an Artificial Neural Network (ANN) model was built to assess the metal reduction capability, considering the variables of pH, temperature, incubation duration, and initial metal concentration. The model attained an excellent expected accuracy (R² > 0.90). With these features, this bacterial strain is excellent for bioremediation and use for industrial purposes and agricultural sustainability in metal-contaminated agricultural fields. Full article

Stipagrostis pennata is an important plant in desert ecosystems. Its seed-endophytic bacteria may play a critical role in plant growth and environmental adaptation processes. This study systematically analyzed the community composition and potential plant growth-promoting (PGP) functions of seed-endophytic bacteria associated with S. pennata. The results showed that while the overall diversity of bacterial communities from different sampling sites was similar, significant differences were observed in specific functional genes and species abundances. Nine endophytic bacterial strains were isolated from the seeds, among which Bacillus altitudinis strain L7 exhibited phosphorus solubilizing capabilities, nitrogen fixing, IAA production, siderophore generation, and multi-hydrolytic enzyme activities. Additionally, the genomic sequencing of L7 revealed the key genes involved in plant growth promotion and environmental adaptation, including Na⁺ efflux systems, K⁺ transport systems, compatible solute synthesis genes, and the gene clusters associated with nitrogen metabolism, IAA synthesis, phosphate solubilization, and siderophore synthesis. Strain L7 exhibits salt and osmotic stress tolerance while promoting plant growth, providing a promising candidate for desert microbial resource utilization and plant biostimulant development. Full article

Reducing the application of chemical fertilizers and remediating heavy metal pollution in soil are important directions in current agricultural research. Utilizing the plant-growth-promoting and remediation capabilities of bacteria can provide more environmentally friendly assistance to agricultural production. In this study, the Burkholderia alba YIM B08401 strain was isolated and identified from rhizospheric soil, subjected to whole-genome sequencing and analysis, and its Cd²⁺ adsorption efficiency and characteristics were confirmed using multiple experimental methods, including atomic absorption spectrometry (AAS), Fourier transform infrared spectroscopy (FTIR), and scanning electron microscopy with energy-dispersive X-ray spectroscopy (SEM-EDS). The results showed that the genome of strain YIM B08401 has a total length of 7,322,157 bp, a GC content of 66.39%, and predicts 6504 protein-coding sequences. It contains abundant functional genes related to nutrient conversion (phosphate solubilization, sulfur metabolism, zinc solubilization, siderophore production), plant hormone regulation (indole-3-acetic acid secretion, ACC deaminase production), phenolic acid degradation, root colonization, heavy metal tolerance, pathogen antagonism, and the production of antagonistic secondary metabolites. Additionally, strain YIM B08401 can specifically bind to Cd²⁺ through various functional groups on the cell surface, such as C-O-C, P=O, and O-H, enabling biosorption. In conclusion, strain YIM B08401 is an excellent strain with plant-growth-promoting, disease-resistant, and bioremediation capabilities, warranting further development as a biofertilizer for agricultural applications to promote green and sustainable agricultural development. Full article

The excessive use of chemical fertilizers in tea cultivation threatens soil health, environmental sustainability, and long-term crop productivity. This study explores the application of plant growth-promoting bacteria (PGPB) as an eco-friendly alternative to conventional fertilizers. A bacterial consortium was developed using selected rhizobacterial isolates—Lysinibacillus fusiformis, five strains of Serratia marcescens, and two Bacillus spp.—based on their phosphate and zinc solubilization abilities and production of ACC deaminase, indole-3-acetic acid, and siderophores. The consortium was tested in both pot and field conditions using two tea clones, S3A3 and TS491, and compared with a chemical fertilizer treatment. Plants treated with the consortium showed enhanced growth, biomass, and antioxidant activity. The total phenolic contents increased to 1643.6 mg GAE/mL (S3A3) and 1646.93 mg GAE/mL (TS491), with higher catalase (458.17–458.74 U/g/min), glutathione (34.67–42.67 µmol/gfw), and superoxide dismutase (679.85–552.28 units/gfw/s) activities. A soil metagenomic analysis revealed increased microbial diversity and the enrichment of phyla, including Acidobacteria, Proteobacteria, Actinobacteria, Chloroflexi, and Firmicutes. Functional gene analysis showed the increased abundance of genes for siderophore biosynthesis, glutathione and nitrogen metabolism, and indole alkaloid biosynthesis. This study recommends the potential of a PGPB consortium as a sustainable alternative to chemical fertilizers, enhancing both the tea plant performance and soil microbial health. Full article

Plant growth-promoting rhizobacteria (PGPR) are beneficial soil microorganisms that enhance plant growth and stress tolerance through various mechanisms, including phytohormone production, EPS production, phosphate solubilization, and extracellular enzyme production. These bacteria establish endosymbiotic relationships with plants, improving nutrient availability and overall crop productivity. Despite extensive research on PGPR isolation, their practical application in agricultural fields has faced challenges due to environmental stresses and limited survival during storage. To address these limitations, the present study aimed to isolate salt-tolerant bacterial strains and formulate them with organic carriers to enhance their stability and effectiveness under saline conditions. The isolated bacterial strains exhibited high salt tolerance, surviving NaCl concentrations of up to 850 millimolar. These strains demonstrated basic key plant growth-promoting traits, including phosphate solubilization, auxin production, and nitrogen fixation. The application of carrier-based formulations with both strains, Bacillus wiedmannii (RR2) and Bacillus paramobilis (RR3), improved physiological and biochemical parameters in wheat plants subjected to salinity stress. The treated plants, when subjected to salinity stress, showed notable increases in chlorophyll a (73.3% by Peat + RR3), chlorophyll b (41.1% by Compost + RR3), carotenoids (51.1% by Peat + RR3), relative water content (77.7% by Compost + RR2), proline (75.8% by compost + RR3), and total sugar content (12.4% by peat + RR2), as compared to the stressed control. Plant yield parameters such as stem length (35.1% by Peat + RR3), spike length (22.5% by Peat + RR2), number of spikes (67.6% by Peat + RR3), and grain weight (39.8% by Peat + RR3) were also enhanced and compared to the stressed control. These results demonstrate the potential of the selected salt-tolerant PGPR strains (ST-strains) to mitigate salinity stress and improve wheat yield under natural field conditions. The study highlights the significance of carrier-based PGPR applications as an effective and sustainable approach for enhancing crop productivity in saline-affected soils. Full article

Aims: Soil compaction is one of the main challenges in agriculture, negatively affecting cotton growth (Gossypium hirsutum L.), nutrition, and productivity. This study evaluated the efficacy of plant growth-promoting bacteria (PGPB), Exiguobacterium sibiricum, and Pantoea vagans in mitigating the effects of different soil compaction levels (65%, 75%, 85%, and 95%) on cotton performance. Methods: Parameters such as plant height, stem diameter, number of leaves, shoot dry matter (SDM), and nutrient content in leaves, stems, and roots were assessed. The methodology included variance analysis and mean clustering to identify significant differences among treatments using R software. Results: The results indicated that PGPB inoculation improved plant growth and nutrition even under high compaction levels. Cotton height increased by up to 45% in compacted soils (95%), while stem diameter and SDM also showed significant gains. Foliar nutrient levels of N (37.2 g kg⁻¹), Ca, and Mg remained within the adequate range for cotton cultivation, reflecting the efficiency of PGPB in enhancing nutrient absorption. Under severe compaction, Ca accumulation dropped to 18.2 g kg⁻¹, highlighting the physical constraints imposed on the roots; however, the bacterial action mitigated this impact. Additionally, bacterial strains increased the availability of N and P in the soil due to their ability to fix nitrogen, solubilize phosphates, and produce exopolysaccharides that improve soil structure. Conclusions: In conclusion, inoculation with Exiguobacterium sibiricum and Pantoea vagans is an effective strategy to mitigate the impacts of soil compaction on cotton. These bacteria promote plant growth and nutrition and enhance the soil’s physical and biological properties. Full article

Dinoflagellates significantly contribute to the carbon fixation and microbial loop in the ocean with high ecological diversity. While the microbial communities associated with the HABs of dinoflagellates have attracted intensive attention in recent years, little attention has been paid to the microbiomes associated with resting cysts, an important stage in the life cycle and bloom initiation dynamics of dinoflagellates. Using Scrippsiella acuminata as a representative of cyst producers and cyst-relevant research in dinoflagellates, we surveyed the bacteria and fungi microbiomes long associated with different life cycle stages of the dinoflagellate culture through 16S and ITS rRNA amplicon sequencing, and predicted their possible functions using the PICRUSt2 algorithm. The results found high species diversity of the associated bacteria–fungi microbiomes, and species featured with diverse and flexible metabolic capabilities that have stably co-occurred with the laboratory culture of S. acuminata. The host-attached and the free-living groups of bacteria–fungi microbiomes, as operationally defined in the context, showed significant differences in terms of their nutritional preferences. The bacteria–fungi species diversity and community structure associated with cysts are also distinguished significantly from that with vegetative cells, with the latter attracting more bacteria–fungi species specializing in phosphate solubilization. These results suggest that the relative species abundance and thus the community structure of the host-associated microbiome shift with the transition of life cycle stages and environmental conditions. Our findings show the association tightness between bacteria–fungi microbiomes and dinoflagellate hosts and the different life stages of hosts shaping the bacteria–fungi communities, which result in dynamic and specific interactions between bacteria–fungi microbiomes and their hosts. Full article

The low availability of phosphorus (P) in soil has become a critical factor limiting crop growth and agricultural productivity. This study aimed to isolate and evaluate a bacterial strain with high phosphate-solubilizing capacity to improve soil phosphorus utilization and promote crop growth. A phosphate-solubilizing bacterium, designated as YS-13, was isolated from farmland soil in Henan Province, China, and identified as Brevibacillus laterosporus based on morphological characteristics, physiological and biochemical traits, and 16S rDNA sequence analysis. Qualitative assessment using plate assays showed that strain YS-13 formed a prominent phosphate solubilization zone on organic and inorganic phosphorus media containing lecithin and calcium phosphate, with D/d ratios of 2.28 and 1.57, respectively. Quantitative evaluation using the molybdenum–antimony colorimetric method revealed soluble phosphorus concentrations of 21.24, 6.67, 11.73, and 17.05 mg·L⁻¹ when lecithin, ferric phosphate, calcium phosphate, and calcium phytate were used as phosphorus sources, respectively. The fermentation conditions for YS-13 were optimized through single-factor experiments combined with response surface methodology, using viable cell count as the response variable. The optimal conditions were determined as 34 °C, 8% inoculum volume, initial pH of 7.55, 48 h incubation, 5 g L⁻¹ NaCl, 8.96 g L⁻¹ glucose, and 8.86 g L⁻¹ peptone, under which the viable cell count reached 6.29 × 10⁸ CFU mL⁻¹, consistent with the predicted value (98.33%, p < 0.05). The plant growth-promoting effect of YS-13 was further validated through a pot experiment using Triticum aestivum cv. Jinchun 6. Growth parameters, including plant height, fresh biomass, root length, root surface area, root volume, and phosphorus content in roots and stems, were measured. The results demonstrated that YS-13 significantly enhanced wheat growth, with a positive correlation between bacterial concentration and growth indicators, although the growth-promoting effect plateaued at higher concentrations. This study successfully identified a high-efficiency phosphate-solubilizing strain, YS-13, and established optimal culture conditions and bioassay validation, laying a foundation for its potential application as a microbial inoculant and providing theoretical and technical support for reducing phosphorus fertilizer inputs and advancing sustainable agriculture. Full article

The objective of this research was to determine the effect of phosphate-solubilizing bacteria (PSB) on phosphorus availability in agricultural soils and the growth of wheat (Triticum aestivum L.). This applied research considered PSB and phosphorus availability in the soil as variables. An experimental design was employed, comprising four groups of pots containing 1 kg of wheat-cultivated soil (no inoculum, 5% inoculum, 10% inoculum, and 15% inoculum), with three replicates each, using a bacterial suspension of 3 × 10⁸ CFU/mL. Wheat seedling development parameters were evaluated on days 29 and 45, and soil phosphorus availability was assessed on day 45. The 10% inoculum treatment yielded superior results in seedling development: plant height, aerial dry biomass, and root dry biomass showed highly significant differences (p < 0.0001). A 10% PSB dose improved soil phosphorus availability from 72.77 ± 0.13 ppm to 96.68 ± 0.58 ppm compared to the control. These findings highlight PSB as a sustainable alternative for enhancing agricultural productivity, thereby reducing dependence on chemical fertilizers. Full article

The utilization rate of phosphorus fertilizer is low in Xinjiang, China, due to the fact that phosphorus is easily fixed by the widely distributed lime soil, leading to the limited contribution of phosphorus fertilizer to crop yield and a decline in crop quality. Phosphate-soluble bacteria can convert insoluble phosphates in the soil into soluble phosphates, playing an important role in soil phosphorus circulation and plant growth. In this study, two bacteria with strong phosphate-solubilizing ability, Enterobacter hormaechei (P1) and Bacillus atrophaeus (P2), were selected from severely salinized soils in Xinjiang, China. The taxonomic status of the strains was determined by analyzing the colony morphology and 16S rRNA gene sequence similarity. Then, the content of organic acids and the activity of acid phosphatase and phytase in the P1 and P2 fermentation broths were measured. Finally, field experiments were conducted in 20 April–2 October 2023 in Wulanwusu, Xinjiang, China, to analyze the effects of phosphate-solubilizing bacterial agents (P1, P2, and P3 (P1 + P2)) on soil physicochemical properties, microbial diversity, and cotton yield. The results showed that both P1 and P2 could significantly solubilize phosphates and produce indole-3-acetic acid (IAA), lactic acid, and tartaric acid. In the cotton field under phosphorus fertilization, the cotton yield of P1, P2, and P3 treatments increased by 10.77%, 8.48%, and 14.00%, respectively, compared with no bacterial agent treatment (CK) (p < 0.05). In addition, the application of phosphate-solubilizing bacterial agents also significantly increased the content of available nutrients and the abundances of Acidobacteria, Bacteroidetes, Fusarium, Bacteroidetes, and Verrucobacteria in the soil compared with CK. In summary, inoculating with phosphate-solubilizing bacteria could promote cotton growth and yield formation by increasing soil available nutrients and altering soil microbial communities. This study will provide a basis for the efficient utilization of phosphorus resources and sustainable agricultural development. Full article

Microorganisms play a crucial role in agricultural systems. The use of plant growth-promoting bacteria (PGPB) to enhance agricultural production in a sustainable and environmentally friendly manner has been widely recognized as a key technology for the future. In this study, we analyzed the diversity changes of bacteria in different ecological niches of mulberry fields based on culture-dependent methods, and we further evaluated their antibacterial and plant growth-promoting (PGP) activities. A total of 346 cultivable bacteria belonging to 30 genera were isolated from mulberry rhizosphere soil, mulberry plants and silkworm intestines, among which the dominant genera were Bacillus, Pseudomonas, and Enterobacter. The bacterial communities in the mulberry rhizosphere soil were more diverse than those in the mulberry endophytes and in the silkworm intestines. The antibacterial test showed that 30 bacteria exhibited antibacterial activity against the plant pathogen Ralstonia solanacearum. PGP trait assays indicated that 58 bacteria were capable of nitrogen fixation, phosphate solubilization, potassium release and siderophore production simultaneously. The screened functional strains promoted the growth of mulberry saplings. The results of this study highlight new findings on the application of silkworm intestinal bacteria in PGPB. Full article

Guar (Cyamopsis tetragonoloba L. Taub.) is a significant summer legume used as food for both humans and livestock. In Saudi Arabia, the root nodule bacteria of guar have not been studied. The present work investigated the phenotypic and genetic diversity of guar microsymbionts. Eighty-eight bacterial strains were isolated from the root nodules of guar grown in different locations of Jazan region of Saudi Arabia. The strains were analyzed based on their phenotypic characteristics and variations in their 16S rRNA gene sequences. A significant proportion of the isolates (90%) were fast-growing rhizobia, with 77% showing tolerance to 3–4% NaCl and 91% capable of thriving at temperatures reaching 40 °C. Several isolates exhibited strong plant growth-promoting traits, particularly in IAA production and phosphate solubilization. Genetic analysis indicated considerable diversity, with isolates classified under the genera Rhizobium, Ensifer, Mesorhizobium, Bradyrhizobium, and Agrobacterium. To the best of our knowledge, this study is the first to report on the phenotypic and genetic diversity of guar microsymbionts in Saudi Arabia. Full article

Soil phosphorus is heavily restricted by soil acidification and salinization. There is a need to determine a biological solution for this issue to replace the overuse of chemical phosphorus fertilizer that aggravates adverse conditions, such as salinity, acidity, and metallic toxicity. Therefore, this study aimed at determining the phosphorus dynamics in terms of the soil, growth, and yield of rice under the supplementation of phosphate (P)-solubilizing purple nonsulfur bacteria (PNSB), Cereibacter sphaeroides ST16 and ST26, in salinized soil collected from An Bien district, Kien Giang province, Vietnam, under greenhouse conditions. The experiment followed a completely randomized block design with two factors and four replications. In particular, the reduced percentages of P fertilizer (A) were 0%, 25%, 50%, 75%, and 100% P. The supplementations of C. sphaeroides strains (B) were the negative control, ST16, ST26, and a mixture of both ST16 and ST26. The results showed that supplying the C. sphaeroides ST16 and ST26 reduced the insoluble P content by 10.1–10.6% Fe-P, 10.3–12.2% Ca-P, and 12.7–43.1% Al-P and increased available P by 8.33–27.8%, leading to total P uptake in plants increasing by 29.4–56.1%. The C. sphaeroides strains also reduced soil Na⁺. Therefore, supplying the C. sphaeroides strains increased the rice growth and yield components of rice, leading to a greater yield of 26.5–51.0%. Supplying each strain of ST16 and ST26 reduced 50–100% P fertilizer as recommended. Ultimately, inoculation of the bacterial mixture allowed a reduction by 100% P fertilizer percentage as recommended but the yield remained the still. Full article