Search Results (37)

Efficient new methods are needed to support initiatives to reduce, refine, and/or replace toxicity testing in vertebrates. 5-fluorouracil (5FU), hydroxyurea (HU), and ribavirin (RV) are mammalian teratogens. Skeletal, endocrine organ, and cardiac effects are often associated with teratogenesis, and a simple nematode like C. elegans lacks these systems. However, many genetic pathways required for mammalian morphogenesis have at least some conserved elements in this small, invertebrate model. The C. elegans lifecycle is 3 days. The effects of 5FU, HU, and RV on the C. elegans morphology were evaluated on day 4 post-initiation of the feeding after hatching for continuous and 24 h (early-only) developmental exposures. Continuous exposures to 5FU and HU induced increases in the incidences of abnormal gonadal structures that were significantly reduced in early-only exposure groups. The incidence of prolapse increased with continuous 5FU and HU exposures and was further increased in early-only exposure groups. Intestinal prolapse through the vulval muscle in C. elegans may be related to reported 5FU and HU effects on skeletal muscle and the gastrointestinal tract in mammals. Continuous RV exposures induced a phenotype lacking a uterus and gonad arms, as well as vulval anomalies that were largely, but not completely, reversed with early-only exposures, which is consistent with reported reversible reproductive tract anomalies after an RV exposure in mammals. These findings suggest that C. elegans can be used to detect the hazard risk from chemicals that adversely affect conserved pathways involved in organismal morphogenesis, but to determine the fit-for-purpose use of this model in chemical safety evaluations, further studies using larger and more diverse chemical test panels are needed. Full article

The health benefits of tea are primarily attributed to its chemical composition, particularly phenolic compounds. As a renowned tea from Guangdong, China, Xianhu tea (XHT) has not been thoroughly studied in terms of its phenolic composition or health-promoting properties. This study characterized the phenolic compounds in Xianhu tea water extract (XHT) using liquid chromatography–tandem mass spectrometry (LC-MS/MS) and evaluated its antioxidant activity in vitro. Furthermore, the effects of XHT extracts on reactive oxygen species (ROS), malondialdehyde (MDA), superoxide dismutase (SOD), catalase (CAT), lipofuscin levels, and lifespan in Caenorhabditis elegans were assessed, alongside their modulation of aging-related genes. Compared with Xinyang Maojian tea water extract (XYMJ) and Yingde black tea water extract (YDBT), XHT exhibited a significantly higher polyphenol content, with 23 phenolic compounds identified as characteristic markers. XHT demonstrated superior 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical-scavenging and 2,2′-azinobis-(3-ethylbenzthiazoline-6-sulfonic acid) (ABTS) inhibition capacities, the greatest reductions in ROS, MDA, and lipofuscin levels, and the highest upregulation of SOD and CAT activities. The lifespan was 23.50% and 21.07% significantly longer than nematodes in the control group. Moreover, XHT modulated 13 aging-related genes, which strongly correlated with the 23 identified phenolic compounds. The research results of the above indicators were all obtained without affecting the normal feeding and reproductive capabilities of C. elegans. These findings suggest that these phenolics are the key bioactive components responsible for the anti-aging effects of XHT. Full article

Lance nematodes (Hoplolaimus spp.) feed on the roots of various plants, including key horticultural products. An investigation of the genetic diversity and structure of six Hoplolaimus species, utilizing the cytochrome c oxidase I (COI) of the mtDNA gene, was based on 174 sequences available on the NCBI. Based on the COI of mtDNA, the haplotype analysis revealed 44 haplotypes. Nucleotide diversity was low among all species of Hoplolaimus, except for H. magnistylus (π = 0.04915) and H. stephanus (π = 0.06746). In contrast, haplotype diversity (Hd) was high, especially for H. stephanus (Hd = 0.89) and H. pararobustus (Hd = 0.90). Phylogenetic analysis grouped the various populations into eight clades, and the result showed that H. magnistylus was placed in three different clades, which showed high variability in haplotype supported by the haplotype network. Neutrality tests and mismatch distribution based on the mtDNA supported the hypothesis of a constant population with no expansion in Hoplolaimus, except for H. concaudajuvencus (Tajima (D) = −0.84971) and H. columbus (Tajima (D) = −0.87674). In conclusion, genetic analysis showed a neutral evolution amongst the Hoplolaimus species. The result of the present study provides a better insight into the Hoplolaimus species toward species delimitation and managing this plant-parasitic nematode in various crops. Full article

The forest swamp ecosystem, as a special wetland ecosystem, is a key link in the material cycle and an important carbon sink in the carbon cycle. The global carbon cycle is of great significance, but the impact of forest swamp succession and soil depth on soil active organic matter and nematode community structure and diversity is unclear. This study used the “space instead of time” method to investigate the succession process of forest swamps from grasslands (WC) and shrubs (WG) to forests (WS) in national nature reserves. The results showed that during the forest succession process, the dominant nematode communities in the WC and WG stages were dominated by the genera Apis and Labroidei, while the dominant genera increased in the WS stage. The total abundance of nematodes increased, and the number of groups was ordered WG > WC > WS. The diversity in soil nematode communities according to Shannon–Wiener (H′), Pielou (J), and Trophic diversity (TD) was WS > WG > WC, which is related to vegetation, soil physical and chemical properties, and microbial community structure. The maturity index (MI) was WG > WS > WC. The soil food web was dominated by bacterial channels and had characteristics in forest metabolic activity and regulation ability. At different soil depths, there were significant differences in the community, with species such as the spiny cushioned blade genus being key. The number and group size of nematodes varied from 0–10 cm > 10–20 cm > 20–30 cm. The relative abundance of feeding nematodes changed with depth, while diversity indices such as H′, J, and TD decreased with depth. Ecological function indices such as MI and PPI showed depth variation patterns, while basic indices (BI) and channel indices (CI) showed significant differences. In terms of soil variables, during the forest succession stage, soil organic carbon (SOC), soluble organic nitrogen (DON), easily oxidizable organic carbon (ROC), microbial biomass carbon (MBC), and microbial biomass nitrogen (MBN) showed a gradually increasing trend with WC-WG-WS, while total nitrogen (TN), soluble organic carbon (DOC), soil temperature (ST), and soil moisture (SM) showed opposite changes. There were significant differences in soil ST, SM, and DON values with succession (p < 0.05). At different soil depths, except for DON and ROC, which increased first and then decrease with depth, the values of other physical and chemical factors and active carbon and nitrogen components at depths of 0–10 cm were higher than those at other depths and decreased with depth. An analysis of variance showed significant differences in MBC and MBN values at different soil depths (p < 0.05), which is of great significance for a deeper understanding of the mechanism of soil nematode community construction and its relationship with the environment. Full article

Agricultural soil environments contain different types of nematodes in all trophic levels that aid in balancing the soil food web. Beneficial free-living nematodes (FLNs) consist of bacterivores, fungivores, predators, and omnivores that help in the mineralization of the soil and the top-down control of harmful plant-parasitic nematodes (PPNs). Annually, USD 125 billion in worldwide crop losses are caused by PPNs, making them a plant pathogen of great concern for growers. Farmers have started to implement the use of cover crops in agricultural systems for the protection and enrichment of soil but research on how different cover crops affect nematode populations is lacking and in demand. This study aims to determine the effects of legume and grass cover crops, Cowpea (Vigna unguiculata) and Pearl Millet (Pennisetum glaucum), as well as their mixture on the abundance and diversity of FLN and PPN populations. Soil samples were collected at the time of cover crop maturity and spinach harvest to analyze nematode communities using both morphological and DNA metabarcoding analysis. The results showed that the application of Cowpea and Pearl Millet as well as their mixture in a spinach agricultural system led to the control of PPNs and proliferation of FLN communities, with each cover crop treatment demonstrating different advantages for the various nematode feeding groups. Soil property analysis did not show a significant difference except for magnesium and total nitrogen levels, which were significantly correlated with nematode community composition. The overall findings of our study indicate that the choice of cover crop implementation by growers for spinach cultivation should be based on specific soil health conditions, which in turn promote soil fertility and a healthy nematode community. Full article

We examined the taxonomical and functional traits of free-living nematodes, focusing on their density by genus, maturity index (MI), and trophic diversity index (ITD) to determine whether these indices are sensitive to changes in the organic content of the sediment. Samples were collected in autumn and spring from 12 subtidal sampling stations in Rocha Lagoon, distributed between the outer (near the mouth) and the inner sector. We identified 26 genera, with higher abundance in the inner sector, likely due to increased organic matter and biopolymers. In spring, both sectors had sediments rich in fresh organic matter, dominated by deposit-feeding nematodes and showing low trophic diversity (high ITD values). In autumn, the inner sector maintained similar characteristics to spring sampling, while the outer one was dominated by older organic matter, predatory nematodes and higher trophic diversity. The MI showed low variation between sectors, suggesting a disturbed environment. Our findings support the use of ITD to assess other aspects of communities such as the response of trophic groups to the freshness of organic matter, while the MI seems less effective for assessing the ecological status of Rocha Lagoon. Understanding nematode biodiversity and functional traits is crucial for effective ecological quality assessments. Full article

The reclamation of post-mining land for agricultural purposes has continued to be a big challenge. Our study concerns the use of soil microfauna (nematodes) and mesofauna (mites and springtails) as indicators of soil quality after 6 years of agricultural reclamation of a post-mining area in west–central Poland. A new method, which involves rotation growing of industrial hemp (H) and alfalfa (A) and incorporating the resulting biomass into the soil, was used to reclaim two sites (5 and 15 years after mining) representing different types of post-mining deposits (clayey and sandy). On each site, two plots were established, where each crop was grown for three years, but in a different order during the rotation cycle (3H3A and 3A3H). The results showed significant differences in the abundance and structure of the fauna communities between 3H3A and 3A3H reclamation practices, as well as between the reclaimed plots and non-reclaimed (NR) plots, where spontaneous succession proceeded. The three animal groups were more abundant in the reclaimed soil compared to the NR soil. The highest densities for nematodes were observed in the 3H3A plots and for the mesofauna in the 3A3H plots. The reclamation practices had a positive effect on groups involved in the regulation of C and N mineralisation, particularly bacterial- and hyphal-feeding nematodes and oribatid mites, and a negative effect on plant-feeding nematodes and euedaphic collembolans. The finding that most of the parameters of the studied biota had values resembling those of agricultural soils after 6 years of reclamation clearly indicates the effectiveness of the applied practices for transforming degraded land into soils that mirror soils under agricultural use. Full article

This study evaluated nematodes as an alternative to live Artemia when provided in a co-feeding regime to Pacific white shrimp (Penaeus vannamei) post-larvae (PL) reared in a biofloc nursery system. A 20-day experiment employing PL₁₁ was performed for an evaluation of four dietary groups: control [C] (fed exclusively with a dry commercial feed); artificial Artemia [AA] (dry feed composed of extracted and processed Artemia cysts and dry commercial feed); live Artemia and dry commercial feed [LA]; and nematodes and dry commercial feed [N] (Panagrolaimus sp. dry nematodes). The diets were provided twice a day, with the remaining six feed provisions being a commercial dry feed for all experimental groups. A biofloc system was chosen as it offers a potentially sustainable approach to intensive shrimp farming. Alkalinity and pH in the [N] group were significantly higher in the last 5 days of the experiment (p < 0.05), likely causing the significantly lower nitrite levels observed in that same group (p < 0.05). Total and volatile suspended solids were significantly lower in the two live feed groups when compared with [C] and [AA] (p < 0.05). Although PL fed the dry diets exhibited higher growth rates (p < 0.05), the [N] and [LA] groups presented significantly higher final survivals (p < 0.05). No differences were found for survival after a salinity stress test (p ≥ 0.05). These results suggest that nematodes can successfully substitute Artemia in a co-feeding regime for P. vannamei PL reared in biofloc nursery systems. Full article

We assessed the impact of increasing olive mill waste (OMW) concentrations (10%, 35%, 70%, and 100% v/v) on soil free-living nematode communities and Lactuca sativa (lettuce) growth, 10 and 45 days after application (DAA). L. sativa plants showed a survival threshold at OMW10%, with higher concentrations proving fatal. Contrary to expectations, nematode abundance increased with OMW concentration. OMW10% induced a rapid surge in nematode abundance, stabilizing at 45 DAA, resembling control values. OMW35%, OMW70%, and OMW100% plots exhibited persistent, gradual increases, surpassing control values at 45 DAA. All treatments favored fungal feeders, resulting in the overdominance of the genus Aphelenchus both at 10 and 45 DAA. Even though OMW did not exert a toxic effect on nematode populations, this shift in the community structure towards the dominance of a single genus could suggest an imbalance in the soil community, which could have negative implications for soil health and ecosystem functioning. Overall, our study provides insights into the complex interactions between OMW, soil nematode communities, and plant growth, emphasizing the importance of understanding soil ecology for sustainable agricultural management. Full article

Vermicomposting stands as a sustainable and environmentally friendly waste management practice, leveraging the metabolic prowess of earthworms to facilitate the decomposition of organic matter into nutrient-rich compost. The aim of this experiment was to study the influence of Eisenia fetida on the density and the tropic structure of a nematode community during the vermicomposting process over a period of 3 months. Sewage sludge and green waste served as composting substrates. Overall, six compost variants were prepared consisting of three variants incorporating E. fetida and three control variants lacking E. fetida. Throughout the investigation, samples were gathered on a monthly basis, with each variant undergoing three repetitions. The aim was to isolate nematodes, determine the population density of the five trophic groups, and identify the dominant community. The anaysis was conducted employing both microscopic examination and molecular metabarcoding (NGS). It was shown that the bacterial-feeding community maintained dominance. The introduction of E. fetida into the compost led to a significant rise in the abundance of Diplogasteridae. In the variant without E. fetida, the amount of Diplodasteridae exceeded 0.1% only after the 30th (C3) or the 60th (C1, C2) day of composting, while in the compost with E. fetida, they were present in large amounts (ranging from 11.0% to 28.0%) already on the 30th day of composting. The introduction of Eisenia fetida also led to a notable reduction in H. gingivalis with significant implications for mitigating the risk of halicephalobiosis. The introduction of E. fetida resulted in reducing H. gingivalis to levels below 0.1% in all compost variants. Full article

The aim of this study was to compare the species composition of gastrointestinal parasites in wild boar feeding in the city of Szczecin with those in its suburban area, as well as to determine the prevalence and intensity of this parasite infection. The intestines and stomachs of 57 wild boars were supplied by a municipal hunter from the city of Szczecin. Both analysed groups of animals were infected with the following parasites: Eimeria debliecki, E. suis, E. polita, E. scabra, Isospora suis, Ascaris suum and Oesophagostomum dentatum. Wild boar from the city were characterised as having a significantly higher prevalence of total Eimeria (p = 0.04) and a lower prevalence of noted species of nematodes (p = 0.15) compared to those from the suburban area. Since the wild boars were mainly infected with Eimeria, it should be assumed that they may pose a real health threat to farm pigs and other farm animals for which Eimeria is a pathogenic parasite. The occurrence of coccidiosis leads to serious health problems and economic losses for breeders. Although the prevalence of A. suum was low, it should be taken into account that this nematode is able to both infect and complete their life cycle in humans. Full article

In a field experiment, composted coffee waste (CW) was used as soil amendment at three different rates (2%, 4%, and 8%) in plots cultivated with wheat; the effects on the soil nematode community and plant growth were studied. By sampling twice, i.e., three and six months after the application of treatments (3MAA and 6MAA), the duration of these effects was also evaluated. Treatment using composted coffee waste (CW) led to an increased abundance of all soil nematodes, especially of bacterivores and fungivores, probably via a bottom-up effect of CW on the soil community. The most-affected genera were the enrichment opportunists Panagrolaimus and Rhabditis, which increased after CW addition in a dosage-dependent way at 3MAA, while at 6MAA they were replaced by general opportunists, mainly bacterivorous and fungivorous genera; a nematotoxic effect of CW was also observed in the 6MAA condition. The nematode indices and the metabolic footprint indicated an enriched and vigorous soil three months after CW addition and a lower enrichment status of the soil together with a higher fungal participation in the decomposition pathway six months after treatments. However, in the 6 MAA condition, the soil nutrient values were higher in the CW-treated plots. None of our treatments inhibited or enhanced plant growth. Full article

Biodiversity within composting systems involves a variety of microorganisms including nematodes. In the research, nematode populations were monitored within six simultaneously operating composting processes. These processes involved varying proportions of feedstock materials. The primary objective was to evaluate the consistency of nematode community succession patterns across the composting processes over a time of 3 months. During the study, samples were taken every month to isolate nematodes, determine the population density of the five trophic groups (per genus) and determine the dominant nematode species. It was shown that the bacterial-feeding community maintained dominance, while the fungus-feeding nematodes gradually increased in dominance as the maturation process progressed. The presence of predatory nematodes Mononchoides which were initially absent, along with the total absence of parasitic nematodes in the late stages of waste stabilization, serves as strong evidence for the reliable evaluation of the biodegradable waste processing level. Based on the obtained results, it is evident that the succession of nematode communities holds promise as a reliable method for evaluating compost maturity. Full article

Paramacrobiotus species have been described in almost every corner of the world. To date, 45 species have been reported from this genus. Among which, 13 belong to the areolatus group (without a microplacoid) and 32 belong to the richtersi group (with a microplacoid). The species’ presence in different climatic conditions and habitats provides evidence of their adaptation to various harsh environments. The species of the genus are both bisexual (diploid) and parthenogenetic (triploid). The bisexual species have external fertilization. And they are omnivorous whose diet consists of certain cyanobacteria, algae, fungi, rotifers, nematodes and juvenile tardigrades. The life history of species from this genus varies from species to species. Because the species has a strong predilection for cryptobiosis, numerous investigations involving anhydrobiosis have been conducted utilizing specimens from varied Paramacrobiotus species to date. In this review, we provide a concise summary of changes observed due to various cryptobiotic conditions in many species of this genus, the geographical distribution of all the species, feeding behaviour, life history, microbiome community, Wolbachia endosymbiont identification, reproduction, phylogeny and general taxonomy of the species from the genus Paramacrobiotus. Furthermore, we provide a new diagnostic key to the genus Paramacrobiotus based on the morphological and morphometric characters of adults and eggs. Full article

Biodiversity within the animal kingdom is associated with extensive molecular diversity. The expansion of genomic, transcriptomic and proteomic data sets for invertebrate groups and species with unique biological traits necessitates reliable in silico tools for the accurate identification and annotation of molecules and molecular groups. However, conventional tools are inadequate for lesser-known organismal groups, such as eukaryotic pathogens (parasites), so that improved approaches are urgently needed. Here, we established a combined sequence- and structure-based workflow system to harness well-curated publicly available data sets and resources to identify, classify and annotate proteases and protease inhibitors of a highly pathogenic parasitic roundworm (nematode) of global relevance, called Haemonchus contortus (barber’s pole worm). This workflow performed markedly better than conventional, sequence-based classification and annotation alone and allowed the first genome-wide characterisation of protease and protease inhibitor genes and gene products in this worm. In total, we identified 790 genes encoding 860 proteases and protease inhibitors representing 83 gene families. The proteins inferred included 280 metallo-, 145 cysteine, 142 serine, 121 aspartic and 81 “mixed” proteases as well as 91 protease inhibitors, all of which had marked physicochemical diversity and inferred involvements in >400 biological processes or pathways. A detailed investigation revealed a remarkable expansion of some protease or inhibitor gene families, which are likely linked to parasitism (e.g., host–parasite interactions, immunomodulation and blood-feeding) and exhibit stage- or sex-specific transcription profiles. This investigation provides a solid foundation for detailed explorations of the structures and functions of proteases and protease inhibitors of H. contortus and related nematodes, and it could assist in the discovery of new drug or vaccine targets against infections or diseases. Full article