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Keywords = near IR hyperspectral imaging

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14 pages, 2743 KB  
Article
High-Throughput Phenotyping of Cereal Crops Under Stress: Unveiling Evapotranspiration and Respiration Patterns
by Kenny Paul, Pablo Rischbeck and Hans-Peter Kaul
Agronomy 2025, 15(10), 2442; https://doi.org/10.3390/agronomy15102442 - 21 Oct 2025
Viewed by 755
Abstract
Addressing crop responses to drought and nitrogen stress is crucial for improving resilience and ensuring sustainable agriculture under changing climatic conditions. This study investigates the physiological responses of wheat (Videodur [DU], Sensas [SW]) and barley (Tiroler Imperial [SG1], Amidala [SG2]) cultivars to drought [...] Read more.
Addressing crop responses to drought and nitrogen stress is crucial for improving resilience and ensuring sustainable agriculture under changing climatic conditions. This study investigates the physiological responses of wheat (Videodur [DU], Sensas [SW]) and barley (Tiroler Imperial [SG1], Amidala [SG2]) cultivars to drought and nitrogen stress during early reproductive to full maturity stages (BBCH 70 to 90) using infrared (IR) and visible near-infrared–shortwave infrared (VNIR-SWIR) hyperspectral imaging. Evapotranspiration (ET) and respiration were analyzed as functions of mean plant temperature (Tplant), light intensity, plant water status (indicated by the Normalized Difference Water Index, NDWI), and air humidity. Results revealed that drought stress significantly reduced NDWI and ET while increasing Tplant, with wheat cultivars showing greater sensitivity to water deficit. Barley, particularly SG2, exhibited superior water retention and thermal regulation, highlighting its potential for drought resilience with consistently higher NDWI values and lower Tplant. Temporal analysis identified the reproductive stage as the most vulnerable to stress, with a sharp decline in NDWI and rise in Tplant, emphasizing the need for stage-specific interventions. Regression models explained 74% of ET variance and 67% of respiration variance, underscoring the predictive power of NDWI and Tplant as proxies for plant water status and metabolic activity. Real-time evapotranspiration (ET) measurements using a balance during precision watering further validated the predictive capabilities of NDWI and Tplant. These findings provide valuable insights into growth stage-specific breeding programs and sustainable crop management strategies under environmental stress conditions. Full article
(This article belongs to the Section Water Use and Irrigation)
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17 pages, 12070 KB  
Article
Monitoring Asian Dust Storms from NOAA-20 CrIS Double CO2 Band Observations
by Chenggege Fang, Yang Han and Fuzhong Weng
Remote Sens. 2022, 14(18), 4659; https://doi.org/10.3390/rs14184659 - 18 Sep 2022
Cited by 2 | Viewed by 3236
Abstract
Sand and dust storms (SDSs) are common environmental hazards in spring in Asian continent and have significant impacts on human health, weather, and climate. While many technologies have been developed to monitor SDSs, this study investigates the spectral characteristics of SDSs in satellite [...] Read more.
Sand and dust storms (SDSs) are common environmental hazards in spring in Asian continent and have significant impacts on human health, weather, and climate. While many technologies have been developed to monitor SDSs, this study investigates the spectral characteristics of SDSs in satellite hyperspectral infrared observations and propose a new methodology to monitor the storms. An SDS emission and scattering index (SESI) is based on the differential responses of infrared CO2 shortwave and longwave IR bands to the scattering and emission of sand and dust particles. For a severe dust storm process during 14–17 March 2021, the SESI calculated by the Cross-track Infrared Sounder (CrIS) observations shows very negative values in the dusty region and is consistent with the spatial distribution of dust identified from the true-color RGB imagery and the dust RGB imagery of the Visible Infrared Imaging Radiometer Suite (VIIRS) on the NOAA-20 Satellite. The use of the SESI index in the near-surface layer allows for monitoring of the dust storm process and enables an effective classification between surface variations and dust weather events. Full article
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42 pages, 8546 KB  
Review
Agricultural Potentials of Molecular Spectroscopy and Advances for Food Authentication: An Overview
by John-Lewis Zinia Zaukuu, Eszter Benes, György Bázár, Zoltán Kovács and Marietta Fodor
Processes 2022, 10(2), 214; https://doi.org/10.3390/pr10020214 - 24 Jan 2022
Cited by 41 | Viewed by 7474
Abstract
Meat, fish, coffee, tea, mushroom, and spices are foods that have been acknowledged for their nutritional benefits but are also reportedly targets of fraud and tampering due to their economic value. Conventional methods often take precedence for monitoring these foods, but rapid advanced [...] Read more.
Meat, fish, coffee, tea, mushroom, and spices are foods that have been acknowledged for their nutritional benefits but are also reportedly targets of fraud and tampering due to their economic value. Conventional methods often take precedence for monitoring these foods, but rapid advanced instruments employing molecular spectroscopic techniques are gradually claiming dominance due to their numerous advantages such as low cost, little to no sample preparation, and, above all, their ability to fingerprint and detect a deviation from quality. This review aims to provide a detailed overview of common molecular spectroscopic techniques and their use for agricultural and food quality management. Using multiple databases including ScienceDirect, Scopus, Web of Science, and Google Scholar, 171 research publications including research articles, review papers, and book chapters were thoroughly reviewed and discussed to highlight new trends, accomplishments, challenges, and benefits of using molecular spectroscopic methods for studying food matrices. It was observed that Near infrared spectroscopy (NIRS), Infrared spectroscopy (IR), Hyperspectral imaging (his), and Nuclear magnetic resonance spectroscopy (NMR) stand out in particular for the identification of geographical origin, compositional analysis, authentication, and the detection of adulteration of meat, fish, coffee, tea, mushroom, and spices; however, the potential of UV/Vis, 1H-NMR, and Raman spectroscopy (RS) for similar purposes is not negligible. The methods rely heavily on preprocessing and chemometric methods, but their reliance on conventional reference data which can sometimes be unreliable, for quantitative analysis, is perhaps one of their dominant challenges. Nonetheless, the emergence of handheld versions of these techniques is an area that is continuously being explored for digitalized remote analysis. Full article
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21 pages, 3778 KB  
Article
A Spectra Classification Methodology of Hyperspectral Infrared Images for Near Real-Time Estimation of the SO2 Emission Flux from Mount Etna with LARA Radiative Transfer Retrieval Model
by Charlotte Segonne, Nathalie Huret, Sébastien Payan, Mathieu Gouhier and Valéry Catoire
Remote Sens. 2020, 12(24), 4107; https://doi.org/10.3390/rs12244107 - 16 Dec 2020
Cited by 5 | Viewed by 3195
Abstract
Fast and accurate quantification of gas fluxes emitted by volcanoes is essential for the risk mitigation of explosive eruption, and for the fundamental understanding of shallow eruptive processes. Sulphur dioxide (SO2), in particular, is a reliable indicator to predict upcoming eruptions, [...] Read more.
Fast and accurate quantification of gas fluxes emitted by volcanoes is essential for the risk mitigation of explosive eruption, and for the fundamental understanding of shallow eruptive processes. Sulphur dioxide (SO2), in particular, is a reliable indicator to predict upcoming eruptions, and its systemic characterization allows the rapid assessment of sudden changes in eruptive dynamics. In this regard, infrared (IR) hyperspectral imaging is a promising new technology for accurately measure SO2 fluxes day and night at a frame rate down to 1 image per second. The thermal infrared region is not very sensitive to particle scattering, which is an asset for the study of volcanic plume. A ground based infrared hyperspectral imager was deployed during the IMAGETNA campaign in 2015 and provided high spectral resolution images of the Mount Etna (Sicily, Italy) plume from the North East Crater (NEC), mainly. The LongWave InfraRed (LWIR) hyperspectral imager, hereafter name Hyper-Cam, ranges between 850–1300 cm−1 (7.7–11.8 µm). The LATMOS (Laboratoire Atmosphères Milieux Observations Spatiales) Atmospheric Retrieval Algorithm (LARA), which is used to retrieve the slant column densities (SCD) of SO2, is a robust and a complete radiative transfer model, well adapted to the inversion of ground-based remote measurements. However, the calculation time to process the raw data and retrieve the infrared spectra, which is about seven days for the retrieval of one image of SO2 SCD, remains too high to infer near real-time (NRT) SO2 emission fluxes. A spectral image classification methodology based on two parameters extracting spectral features in the O3 and SO2 emission bands was developed to create a library. The relevance is evaluated in detail through tests. From data acquisition to the generation of SO2 SCD images, this method requires only ~40 s per image, which opens the possibility to infer NRT estimation of SO2 emission fluxes from IR hyperspectral imager measurements. Full article
(This article belongs to the Special Issue EO for Mapping Natural Resources and Geohazards)
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27 pages, 4462 KB  
Review
Proximal Methods for Plant Stress Detection Using Optical Sensors and Machine Learning
by Alanna V. Zubler and Jeong-Yeol Yoon
Biosensors 2020, 10(12), 193; https://doi.org/10.3390/bios10120193 - 29 Nov 2020
Cited by 93 | Viewed by 14573
Abstract
Plant stresses have been monitored using the imaging or spectrometry of plant leaves in the visible (red-green-blue or RGB), near-infrared (NIR), infrared (IR), and ultraviolet (UV) wavebands, often augmented by fluorescence imaging or fluorescence spectrometry. Imaging at multiple specific wavelengths (multi-spectral imaging) or [...] Read more.
Plant stresses have been monitored using the imaging or spectrometry of plant leaves in the visible (red-green-blue or RGB), near-infrared (NIR), infrared (IR), and ultraviolet (UV) wavebands, often augmented by fluorescence imaging or fluorescence spectrometry. Imaging at multiple specific wavelengths (multi-spectral imaging) or across a wide range of wavelengths (hyperspectral imaging) can provide exceptional information on plant stress and subsequent diseases. Digital cameras, thermal cameras, and optical filters have become available at a low cost in recent years, while hyperspectral cameras have become increasingly more compact and portable. Furthermore, smartphone cameras have dramatically improved in quality, making them a viable option for rapid, on-site stress detection. Due to these developments in imaging technology, plant stresses can be monitored more easily using handheld and field-deployable methods. Recent advances in machine learning algorithms have allowed for images and spectra to be analyzed and classified in a fully automated and reproducible manner, without the need for complicated image or spectrum analysis methods. This review will highlight recent advances in portable (including smartphone-based) detection methods for biotic and abiotic stresses, discuss data processing and machine learning techniques that can produce results for stress identification and classification, and suggest future directions towards the successful translation of these methods into practical use. Full article
(This article belongs to the Special Issue Biosensors for Food and Agricultural Research)
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18 pages, 3540 KB  
Article
Multi-Drug/Gene NASH Therapy Delivery and Selective Hyperspectral NIR Imaging Using Chirality-Sorted Single-Walled Carbon Nanotubes
by Md. Tanvir Hasan, Elizabeth Campbell, Olga Sizova, Veronica Lyle, Giridhar Akkaraju, D. Lynn Kirkpatrick and Anton V. Naumov
Cancers 2019, 11(8), 1175; https://doi.org/10.3390/cancers11081175 - 14 Aug 2019
Cited by 33 | Viewed by 6253
Abstract
Single-walled carbon nanotubes (SWCNTs) can serve as drug delivery/biological imaging agents, as they exhibit intrinsic fluorescence in the near-infrared, allowing for deeper tissue imaging while providing therapeutic transport. In this work, CoMoCAT (Cobalt Molybdenum Catalyst) SWCNTs, chirality-sorted by aqueous two-phase extraction, are utilized [...] Read more.
Single-walled carbon nanotubes (SWCNTs) can serve as drug delivery/biological imaging agents, as they exhibit intrinsic fluorescence in the near-infrared, allowing for deeper tissue imaging while providing therapeutic transport. In this work, CoMoCAT (Cobalt Molybdenum Catalyst) SWCNTs, chirality-sorted by aqueous two-phase extraction, are utilized for the first time to deliver a drug/gene combination therapy and image each therapeutic component separately via chirality-specific SWCNT fluorescence. Each of (7,5) and (7,6) sorted SWCNTs were non-covalently loaded with their specific payload: the PI3 kinase inhibitor targeting liver fibrosis or CCR5 siRNA targeting inflammatory pathways with the goal of addressing these processes in nonalcoholic steatohepatitis (NASH), ultimately to prevent its progression to hepatocellular carcinoma. PX-866-(7,5) SWCNTs and siRNA-(7,6) SWCNTs were each imaged via characteristic SWCNT emission at 1024/1120 nm in HepG2 and HeLa cells by hyperspectral fluorescence microscopy. Wavelength-resolved imaging verified the intracellular transport of each SWCNT chirality and drug release. The therapeutic efficacy of each formulation was further demonstrated by the dose-dependent cytotoxicity of SWCNT-bound PX-866 and >90% knockdown of CCR5 expression with SWCNT/siRNA transfection. This study verifies the feasibility of utilizing chirality-sorted SWCNTs for the delivery and component-specific imaging of combination therapies, also suggesting a novel nanotherapeutic approach for addressing the progressions of NASH to hepatocellular carcinoma. Full article
(This article belongs to the Special Issue Cancer Nanomedicine)
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42 pages, 72769 KB  
Article
Passive Earth Observations of Volcanic Clouds in the Atmosphere
by Fred Prata and Mervyn Lynch
Atmosphere 2019, 10(4), 199; https://doi.org/10.3390/atmos10040199 - 12 Apr 2019
Cited by 29 | Viewed by 9209
Abstract
Current Earth Observation (EO) satellites provide excellent spatial, temporal and spectral coverage for passive measurements of atmospheric volcanic emissions. Of particular value for ash detection and quantification are the geostationary satellites that now carry multispectral imagers. These instruments have multiple spectral channels spanning [...] Read more.
Current Earth Observation (EO) satellites provide excellent spatial, temporal and spectral coverage for passive measurements of atmospheric volcanic emissions. Of particular value for ash detection and quantification are the geostationary satellites that now carry multispectral imagers. These instruments have multiple spectral channels spanning the visible to infrared (IR) wavelengths and provide 1 × 1 km2 to 4 × 4 km2 resolution data every 5–15 min, continuously. For ash detection, two channels situated near 11 and 12 μ m are needed; for ash quantification a third or fourth channel also in the infrared is useful for constraining the height of the ash cloud. This work describes passive EO infrared measurements and techniques to determine volcanic cloud properties and includes examples using current methods with an emphasis on the main difficulties and ways to overcome them. A challenging aspect of using satellite data is to design algorithms that make use of the spectral, temporal (especially for geostationary sensors) and spatial information. The hyperspectral sensor AIRS is used to identify specific molecules from their spectral signatures (e.g., for SO2) and retrievals are demonstrated as global, regional and hemispheric maps of AIRS column SO2. This kind of information is not available on all sensors, but by combining temporal, spatial and broadband multi-spectral information from polar and geo sensors (e.g., MODIS and SEVIRI) useful insights can be made. For example, repeat coverage of a particular area using geostationary data can reveal temporal behaviour of broadband channels indicative of eruptive activity. In many instances, identifying the nature of a pixel (clear, cloud, ash etc.) is the major challenge. Sophisticated cloud detection schemes have been developed that utilise statistical measures, physical models and temporal variation to classify pixels. The state of the art on cloud detection is good, but improvements are always needed. An IR-based multispectral cloud identification scheme is described and some examples shown. The scheme is physically based but has deficiencies that can be improved during the daytime by including information from the visible channels. Physical retrieval schemes applied to ash detected pixels suffer from a lack of knowledge of some basic microphysical and optical parameters needed to run the retrieval models. In particular, there is a lack of accurate spectral refractive index information for ash particles. The size distribution of fine ash (1–63 μ m, diameter) is poorly constrained and more measurements are needed, particularly for ash that is airborne. Height measurements are also lacking and a satellite-based stereoscopic height retrieval is used to illustrate the value of this information for aviation. The importance of water in volcanic clouds is discussed here and the separation of ice-rich and ash-rich portions of volcanic clouds is analysed for the first time. More work is required in trying to identify ice-coated ash particles, and it is suggested that a class of ice-rich volcanic cloud be recognized and termed a ‘volcanic ice’ cloud. Such clouds are frequently observed in tropical eruptions of great vertical extent (e.g., 8 km or higher) and are often not identified correctly by traditional IR methods (e.g., reverse absorption). Finally, the global, hemispheric and regional sampling of EO satellites is demonstrated for a few eruptions where the ash and SO 2 dispersed over large distances (1000s km). Full article
(This article belongs to the Special Issue Volcanic Emissions in the Atmosphere)
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18 pages, 6979 KB  
Article
Fast Atmospheric Correction Method for Hyperspectral Data
by Leonid V. Katkovsky, Anton O. Martinov, Volha A. Siliuk, Dimitry A. Ivanov and Alexander A. Kokhanovsky
Remote Sens. 2018, 10(11), 1698; https://doi.org/10.3390/rs10111698 - 28 Oct 2018
Cited by 30 | Viewed by 9863
Abstract
Atmospheric correction is a necessary step in processing data recorded by spaceborne sensors for cloudless atmosphere, primarily in the visible and near-IR spectral range. In this paper we present a fast and sufficiently accurate method of atmospheric correction based on the analytical solutions [...] Read more.
Atmospheric correction is a necessary step in processing data recorded by spaceborne sensors for cloudless atmosphere, primarily in the visible and near-IR spectral range. In this paper we present a fast and sufficiently accurate method of atmospheric correction based on the analytical solutions of radiative transfer equation (RTE). The proposed analytical equations can be used to calculate the spectrum of outgoing radiation at the top boundary of the cloudless atmosphere. The solution of the inverse problem for finding unknown parameters of the model is carried out by the method of non-linear least squares (Levenberg-Marquardt algorithm) for an individual selected pixel of the image, taking into account the adjacency effects. Using the found parameters of the atmosphere and the average surface reflectance, and also assuming homogeneity of the atmosphere within a certain area of the hyperspectral image (or within the whole frame), the spectral reflectance at the Earth’s surface is calculated for all other pixels. It is essential that the procedure of the numerical simulation using non-linear least squares is based on the analytical solution of the direct transfer problem. This enables fast solution of the inverse problem in a very short calculation time. Testing of the method has been performed using the synthetic outgoing radiation spectra at the top of atmosphere, obtained from the LibRadTran code. In addition, we have used the spectra measured by the Hyperion. A comparison with the results of atmospheric correction in module FLAASH of ENVI package has been performed. Finally, to validate data obtained by our method, a comparative analysis with ground-based measurements of the Radiometric Calibration Network (RadCalNet) was carried out. Full article
(This article belongs to the Special Issue Atmospheric Correction of Remote Sensing Data)
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8 pages, 426 KB  
Article
Cloud Remote Sensing Using Midwave IR CO2 and N2O Slicing Channels near 4.5 μm
by Bo-Cai Gao, Rong-Rong Li and Eric P. Shettle
Remote Sens. 2011, 3(5), 1006-1013; https://doi.org/10.3390/rs3051006 - 17 May 2011
Cited by 6 | Viewed by 8061
Abstract
Narrow channels located in the longwave IR CO2 absorption region between approximately 13.2 and 14.5 μm, the well known CO2 slicing channels, have been proven to be quite effective for the estimates of cloud heights and effective cloud amounts as well [...] Read more.
Narrow channels located in the longwave IR CO2 absorption region between approximately 13.2 and 14.5 μm, the well known CO2 slicing channels, have been proven to be quite effective for the estimates of cloud heights and effective cloud amounts as well as atmospheric temperature profiles. The designs of some of the near-future multi-channel earth observing satellite sensors cannot accommodate these longwave IR channels. Based on the analysis of the multi-channel imaging data collected with the NASA Moderate Resolution Imaging SpectroRadiometer (MODIS) instrument and on theoretical cloud radiative transfer modeling, we have found that narrow channels located at the midwave IR region between approximately 4.2 and 4.55 μm, where the combined CO2 and N2O absorption effects decrease rapidly with increasing wavelength, have similar properties as the longwave IR CO2 slicing channels. The scattering of solar radiation by clouds on the long wavelength side of the 4.3 μm CO2 absorption makes only a small contribution to the upwelling radiances. In order to retain the crucial cloud and temperature sensing capabilities, future satellite sensors should consider including midwave IR CO2 and N2O slicing channels if the longwave IR channels cannot be implemented on the sensors. The hyperspectral data covering the 3.7-15.5 mm wavelength range and measured with the Infrared Atmospheric Sounding Interferometer (IASI) can be used to further assess the utility of midwave IR channels for satellite remote sensing. Full article
(This article belongs to the Special Issue Remote Sensing in Climate Monitoring and Analysis)
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