Search Results (193)

MicroRNA528 (miR528) is a microRNA found only in monocotyledonous (monocot) plants. It has been widely reported that miR528 is involved in the regulation of plant growth and development, such as flowering, architecture, and seed and embryogenic development, in addition to playing a crucial role in response to various biotic and abiotic stresses, such as plant pathogens, salt stress, heat/cold stress, water stress, arsenic stress, oxidative stress, heavy-metal stress, and nutrient stress. Given that it is specific to monocot plants, to which the major staple food crops such as rice and wheat belong, a review of studies investigating its diverse functional roles and underlying mechanisms is presented. This review focuses on the processes in which miR528 and its targets are involved and examines their regulatory relationships with significant participation in plant development and stress responses. It is anticipated that more biological functions and evolutionary effects of miRNA targets will be elucidated with the increase in knowledge of miRNA evolution and examination of target mRNAs. Full article

Duckweeds are aquatic monocotyledonous plants known to be the smallest and the fastest growing angiosperms. The 7th International Conference on Duckweed Research and Applications (7th ICDRA) was held in Bangkok, Thailand, from 12th to 16th November 2024. The conference drew young and experienced scientists from across the world who presented their research in varied fields. This conference report presents the highlights of the advancements in the field of duckweed research and application in the sections: Genomics and Cell Biology; Diversity, Ecology, Evolution; Physiology, Reproduction, Metabolomics; Microbiome and Interactions; Applications; and Future Outlook. The next conference, 8th ICDRA, will be held in Naples, Italy, in 2026. Full article

The DOG1 (Delay of Germination1) family plays key regulatory roles in seed dormancy and germination. However, a genome-wide analysis of DOG1 genes has not been performed for pepper (Capsicum annuum), one of the agriculturally important species, and no studies have been conducted to characterize their expression profiles. Based on C. annuum genome information, the identification and expression analysis of CaDOG1 gene family members through bioinformatics approaches can provide a theoretical foundation for subsequent studies on the biological functions of CaDOG1s and the improvement of seed traits in C. annuum breeding. In this study, a total of 13 CaDOG1 genes were identified in the C. annuum genome. Phylogenetic analysis showed that these CaDOG1s, along with DOG1s from thale cress (Arabidopsis thaliana), rice (Oryza sativa), and maize (Zea mays), were classified into four subgroups. All CaDOG1 genes were unevenly distributed on six C. annuum chromosomes, and they had relatively conserved exon–intron patterns, most with zero to one intron. According to the chromosomal distribution patterns and synteny analysis of the CaDOG1 genes, the CaDOG1 family expanded mainly through replication, which occurred predominantly after the divergence of dicotyledons and monocotyledons. Conserved motif analysis indicated that all encoded proteins contained Motif 2 and Motif 6, except for CaDOG1-3. Expression profile analysis using transcriptome data revealed that CaDOG1 genes were differentially expressed across various tissues and developmental stages, with notable involvement in flowers and seeds. Quantitative real-time PCR also revealed that all CaDOG1 genes were downregulated during seed germination, indicating that CaDOG1s may play negative roles in seed germination. Moreover, upon abscisic acid treatment, six CaDOG1 genes exhibited upregulation, while in response to ethylene, four CaDOG1 genes exhibited downregulation. Taken together, these findings provide an extensive description of the C. annuum DOG1 gene family and might facilitate further studies for elucidating their functions in seed germination. Full article

Taxonomy, primarily focused on systematically exploring, documenting, and characterizing global or regional biodiversity, represents a fundamental scientific discipline for biodiversity conservation and sustainability. However, it has encountered significant developmental constraints and academic marginalization in recent decades, resulting in a notable decline in proficient taxonomists as well as substantial gaps in taxonomic knowledge. In order to call for widespread attention and recognition of the increasing demands to revitalize and advance taxonomy, this article presents a comprehensive review that emphasizes the detrimental impacts of taxonomic knowledge gaps on the conservation and sustainable use of Paris (Melanthiaceae), a monocotyledonous genus hosting remarkable pharmaceutical significance and scientific importance. Overall, the conservation of threatened Paris species as well as the standardization of the cultivation of medicinal Paris species encounter numerous obstacles due to the scarcity of taxonomic expertise and presence of taxonomic knowledge gaps. These findings provide robust empirical evidence highlighting the crucial importance of taxonomy in biodiversity conservation and sustainability, thereby justifying the appeal to resurgence and advancement within this scientific discipline. Full article

Tubby-like proteins (TLPs) are essential multifunctional transcription factors in plants that significantly influence plant growth and development, signal transduction, and adaptation to environmental stress. Despite their importance, there is limited knowledge of the identification and functional roles of the TLP gene family in the common bean. In this study, we identified the PvTLP gene family, which consists of 10 PvTLP genes distributed unevenly across seven chromosomes. Phylogenetic analysis revealed that these genes could be classified into three subfamilies (A, B, and C). All PvTLP proteins contained both conserved tubby and F-box domains, with the exception of PvTLP7, which lacks the F-box domain. Conserved motif analysis revealed that 10 PvTLP genes contained motif 1 and motif 3. Cis-acting elements analysis indicated that PvTLP genes might be involved in light, hormone, and stress responses. Synteny analysis revealed a closer phylogenetic relationship between the common bean and dicotyledons than monocotyledons. qRT-PCR analysis confirmed the significant differences in the expression of most PvTLP genes in both leaves and roots under salt and drought stresses. These findings provide valuable insights for further exploration of the molecular functions of TLPs in plant responses to various stresses and offer key candidate genes for enhancing stress resistance in the common bean through molecular breeding. Full article

The Mildew Resistance Locus (Mlo) gene family is reported in various species as regulators of powdery mildew (PM) resistance. However, the Mlo genes in cucurbit crops remain limited. In this study, a genome-wide investigation of Mlo genes was conducted in eight Cucurbitaceae species and in rice, maize, arabidopsis, and barley, and a total of 202 Mlo genes were identified. The phylogenetic analysis showed that 202 Mlo genes can be classified into six clades, and the Mlo genes from clades I and III are likely pivotal in regulating PM resistance in dicotyledonous and monocotyledonous plants, respectively. The Ka/Ks ratios for these homologous Mlo gene pairs ranged from 0 to 0.6, revealing that they underwent substantial purifying selection during evolution. Among 12 crops, there were the most Mlo genes (22 Cm-mlo) in melon. An expression analysis revealed that six Cm-mlo genes showed expression responses to PM infection in which Cm-mlo38 and Cm-mlo44 were phylogenetically close to Mlo genes that regulated PM resistance. Using the VIGS system for silencing, Cm-mlo38 and Cm-mlo44 enhanced resistance to PM in susceptible material. A protein interaction analysis indicated that Cm-mlo38 might regulate PM resistance through interactions with PR5 and CML proteins. These results provide a comprehensive understanding of the Mlo family in Cucurbitaceae and pave the way for future functional analysis and genetic improvement for improving PM resistance in Cucurbitaceae. Full article

Global agricultural systems are predominantly concentrated in regions characterized by fertile soils, abundant precipitation, and gentle slopes. However, a significant proportion of farmland is situated in areas with poor soil quality, arid conditions, and steep slopes. In such challenging environments, particularly sandy-arid sloping farmlands, selecting native crops that are well-adapted to local conditions is critical for sustainable agricultural practices. This study categorizes local crops in arid regions into four distinct types: tall-stem monocotyledonous plants (represented by maize, Zea mays L.), short-stem monocotyledonous plants (represented by millet, Setaria italica), tap-rooted dicotyledonous plants (represented by soybean, Glycine max (L.) Merr.), and tuberous dicotyledonous plants (represented by potato, Solanum tuberosum L.). A quantitative evaluation framework was developed using five key indices: nitrogen fixation, anti-wind erosion, roots reinforcement, anti-water erosion, and water conservation. These indices were used to calculate the suitability index values for each crop type. The findings revealed that in sandy-arid sloping farmland regions, maize and millet emerged as the most suitable crops for cultivation, followed by soybean, while potato was identified as the least suitable. Maize exhibited high values across all five indices, particularly demonstrating exceptional performance in nitrogen fixation. Additionally, the study demonstrated that traditional farming practices are highly effective in sloping farmlands, since they not only promote crop growth but also mitigate soil erosion. This research offers insights into agricultural management in regions affected by drought, soil erosion, and steep terrain. The results highlight the feasibility of employing traditional farming methods to cultivate maize in such challenging environments, providing practical guidance for sustainable agricultural development. Full article

Scallions are a highly valued leafy vegetable and are enjoyed worldwide due to their appealing taste and nutritional benefits. A combination of short cultivation cycles and high market demand not only enhances food security but also offers a profitable opportunity for growers. In our study, we aim to evaluate the effect of increasing boron (B) applications, specifically 0, 0.2, 0.4, 0.8, 1.2, and 1.6 mM B supplied as boric acid (H₃BO₃) in the nutrient solution, on several key physiological and agronomic parameters in scallions. Results showed that the effects of increasing B levels on biomass production were insignificant, but the root fresh weight (FW) significantly decreased with all B levels. Higher B levels (1.2 and 1.6 mM) caused decreases of 22.9% and 29.6%, respectively. The effects of all B levels on photosynthetic pigment contents [chlorophyll (Chl) a, b, a + b, and carotenoid (Car)], root and shoot membrane permeability (MP), and root, shoot, and leaf nutritional status [phosphorus (P), potassium (K), calcium (Ca), and sodium (Na) concentrations] were found insignificantly. However, all B levels caused a significant increase in the B concentrations of the root, shoot, and leaf of scallions and plants translocated the majority of applied B into their leaves. The translocation factor (TF) of B from the root to the leaf was found to be 138.2%, 133.3%, and 107.3% with 0.8, 1.2, and 1.6 mM B levels, respectively. Moreover, plants exposed to high levels of B showed no significant response or toxicity symptoms. We concluded that B is a phloem mobile element in onion, a non-graminaceous monocotyledonous plant, and therefore accumulates in the upper organs but illustrates partial toxicity symptoms in leaves. Studies with higher B concentrations could be recommended to determine critical B levels for green onion production in B-contaminated areas. Full article

Plant defensins (PDFs) are a group of cationic antimicrobial peptides that are distinguished by their unique tertiary structure and play significant roles in physiological metabolism, growth, and stress tolerance. Defensins are key components of plant innate immunity; they can target a wide variety of microorganisms. This study aimed to identify and investigate the role of Triticum durum PDFs (TdPDFs) in response to environmental stresses. Prior to this, in silico analyses of TdPDF genes were conducted to assess their chromosomal locations, conserved motifs, exon–intron distribution, and cis-regulatory elements in the promoter regions. Additionally, bioinformatic analyses were performed to characterize the structure of TdPDF proteins, evaluate their phylogenetic relationships, predict their subcellular localization, and estimate their physicochemical properties. Docking studies were conducted to assess the interactions between TdPDF proteins and the fungal plasma membrane. A total of 28 TdPDF genes were identified in durum wheat based on their conserved domain PF00304 (gamma-thionin). These genes are distributed across all chromosomes of the durum wheat genome, except for chromosomes 4A and 7A. Analysis of the promoters of these genes revealed numerous elements associated with development, hormone responsiveness, and environmental stress. The majority of TdPDF proteins were predicted to be located extracellular. In addition, TdPDF proteins were classified into three clusters based on sequence similarity. Phylogenetic analysis suggested that TdPDF proteins share ancestral similarities with the PDF sequences of other monocotyledonous species. Molecular docking studies revealed that TdPDF proteins interact with fungal plasma membranes, suggesting that they play a critical role in the resistance of plants to pathogen infections. Expression analysis underlined the crucial role of nine TdPDF genes in the defense responses of durum wheat against both pathogenic and environmental stressors. Overall, our findings underscore the potential of TdPDF genes in host-plant resistance and highlight opportunities for their application in crop improvement toward stress tolerance. Full article

The key flavonoid biosynthesis-related genes and their molecular features in rice have not been comprehensively and systematically characterized. In this study, we investigated the glumes of OsCSN1 mutants and OsCSN2 mutants and found the changes in the total flavonoid contents of the OsCSN2 mutants to be more pronounced than those of the OsCSN1 mutants and the changes in the anthocyanin contents of the OsCSN1 mutants to be more pronounced than those of the OsCSN2 mutants. In addition, key genes related to flavonoid synthesis, OsCHI, showed a more pronounced up-regulation trend, and the OsDFR gene, which encodes a precursor enzyme for anthocyanin synthesis, showed a clear down-regulation trend. And yeast two-hybrid experiments showed that OsCSN1 and OsCSN2 had the ability to interact with OsCUL4. In summary, OsCSN1 and OsCSN2 may regulate the metabolism of flavonoids in rice through CUL4-based E3 ligase, and the two subunits play different roles, laying a foundation for the study of the mechanism of flavonoid metabolism in monocotyledonous plants. Full article

During the mining process in mines, a problem arises with the formation of coal post-mining waste, which is waste rock. It is often stored by mines on various types of land to manage the resulting spoil. However, this is not without its impact on the soil. In this study, we determined the biological and physicochemical properties of rhizosphere soils of the podzolic type, subjected to waste rock reclamation and without the influence of waste rock (control), differing in the type of agricultural use and type of plant cover: field-monocotyledonous (oat cultivation), field-dicotyledonous (buckwheat cultivation), and wasteland covered with very species-poor vegetation. Research has shown that long-term cultivation (buckwheat) contributed to the elimination (leveling out) of the microbial and biochemical differences. The addition of waste rock significantly reduced the number of microorganisms synthesizing siderophore, especially on wasteland (decreased by 1.5 log₁₀/gDW). The abundant presence of the genera Acidocella and Acidphilum, absent in wasteland without waste rock, in the unused soil under the influence of waste rock was strongly associated with the effect of lowering the pH by waste rock in soil not used for agriculture. Increased levels of 77 types of bacteria were observed in samples from buckwheat cultivation compared to wasteland. The number of microorganisms resistant to heavy metals as well as microorganisms capable of producing specific Fe-binding ligands—siderophores—decreased under the influence of waste rock. Moreover, the dehydrogenase activity in long-term cultivation both under the influence of waste rock and without its influence was at a similar level. In contrast, an almost 100-fold decrease in dehydrogenase activity was observed in soils with oat cultivation and a more than 4-fold decrease in acid phosphatase (ACP) and alkaline phosphatase (ALP) activity. These parameters provide an effective system for monitoring soil health, from inexpensive and fast methods to advanced and precise techniques. The results can be applied to solve the problems associated with coal mining wastes by developing methods for their use in soils with long-term agricultural use. Full article

Aegilops tauschii, a monocotyledonous annual grass, recognized as a pivotal progenitor of modern wheat (Triticum aestivum L.), serves as the D-genome donor in hexaploid wheat. This diploid species (2n = 2x = 14, DD) harbors a substantial reservoir of genetic diversity, particularly in terms of biotic and abiotic stress resistance traits. The extensive allelic variation present in its genome has been increasingly utilized for wheat genetic enhancement, particularly through introgression breeding programs aimed at improving yield potential and stress resilience. Heavy metal ATPases (HMAs), which belong to the P-type ATPase superfamily and are also known as P1B-type ATPases, play a crucial role in transporting heavy metals and maintaining metal ion homeostasis in plant cells. HMAs have been extensively studied in model plants like Arabidopsis thaliana and rice. However, this family has not been reported in A. tauschii. Here, we conducted the genome-wide identification and bioinformatics analysis of the AetHMA gene family in A. tauschii, resulting in the discovery of a total of nine AetHMA members. Among AetHMA genes, six pairs are large-block duplication genes, which mainly occur among the four genes of AetHMA2, AetHMA4, AetHMA8, and AetHMA9. Additionally, there is one pair that consists of tandem duplication genes (AetHMA6: AetHMA7). All AetHMAs can be classified into six groups (I–VI), which are further divided into two branches: the copper subclasses and the zinc subclasses. Initially, A. tauschii was grown in a 1/2 Hoagland nutrient solution and subsequently exposed to four heavy metals: zinc (Zn), copper (Cu), manganese (Mn), and cadmium (Cd). Following this treatment, the expression profiles of nine AetHMA genes were assessed. The results indicated that, under zinc and manganese stress, the HMA family members exhibited enhanced expression in the leaves, whereas the expression of most members in the roots was downregulated. In the roots, except for AetHMA2, AetHMA5, and AetHMA8, the expression levels of other members were upregulated in response to Cd exposure. Furthermore, AetHMA4 diminishes the tolerance of yeast to Mn by increasing the absorption of Mn, while AetHMA8 increases the tolerance of yeast to Cd by reducing the absorption of Cd. This study provides experimental data regarding the function of the AetHMA gene in the transport, regulation, and detoxification of heavy metal elements in A. tauschii. Full article

The coconut is a perennial, evergreen tree in the palm family that belongs to the monocotyledonous group. The coconut plant holds significant economic value due to the diverse functions served by each of its components. Any ailment that impacts the productivity of the coconut plantation will ultimately have repercussions on the associated industries and the sustenance of the families reliant on the coconut economy. Deep learning has the potential to significantly alter the landscape of plant disease detection. Convolutional neural networks are trained using extensive datasets that include annotated images of plant diseases. This training enables the models to develop high-level proficiency in identifying complex patterns and extracting disease-specific features with exceptional accuracy. To address the need for a large dataset for training, an Enhanced Visual Geometry Group (EVGG16) model utilizing transfer learning was developed for detecting disease infections in coconut trees. The EVGG16 model achieves effective training with a limited quantity of data, utilizing the weight parameters of the convolution layer and pooling layer from the pre-training model to perform transfer Visual Geometry Group (VGG16) network model. Through hyperparameter tuning and optimized training batch configurations, we achieved enhanced recognition accuracy, facilitating the development of more robust and stable predictive models. Experimental results demonstrate that the EVGG16 model achieved a 97.70% accuracy rate, highlighting its strong performance and suitability for practical applications in disease detection for plantations. Full article

The tea plant (Camellia sinensis) is an economically important crop that plays an important role not only in the beverage industry but also in the pharmaceutical industry. The environment has a great influence on the quality of the tea plant. Heat shock factors (Hsfs) are transcriptional regulators that control the plant response to adversity. However, only a limited number of studies have reported the Hsf gene in Camellia sinensis, and most of these reports involve high-temperature, drought, and salt stress. Research on light, dark, and cold stress is limited. In this study, 22 CsHsf genes were obtained by whole genome sequencing and found to be located on 11 chromosomes. In addition, the gene structure, protein motif, and phylogeny were studied. We classified the genes into three major subfamilies: CsHsfA, CsHsfB, and CsHsfC. Interestingly, we found that there was more alignment between CsHsf and Hsf genes in dicotyledons, including Arabidopsis thaliana and Solanum lycopersicum, than in the monocotyledon Oryza sativa. The expression of many CsHsf genes was affected by low-temperature, light, and dark abiotic stresses. Notably, CsHsf15 and CsHsf16 showed high induction rates under both light and cold stress, and both genes carried cis-acting elements associated with light and low-temperature responses. These results lay a solid groundwork for further investigations into the involvement of CsHsf genes in the response of Camellia sinensis to abiotic stresses. Full article

In crop fields, weeds are perfect hosts for plant pathogenic viruses. The effects of these viruses can range from latent infection to plant death, affecting crop quality and yield and leading to economic loss in the world. Virus infection threatens cereals used as food for most of the world’s population. Weeds growing in cereal fields can compete for essential supply and act as virus reservoirs, strengthening their deteriorating effect. In this review, we collected the current information on viruses presenting in the most important monocotyledonous weeds: Echinocloa crus-galli, Setaria viridis, Cynodon dactylon, Sorghum halepense and millet species growing as weeds. Identifying plant viruses in monocotyledonous weed hosts provides more information about viral infection flow and guides the development of management strategies for safeguarding our field crops. Full article