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Search Results (1,335)

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22 pages, 4631 KB  
Article
Crop Disease Spore Detection Method Based on Au@Ag NRS
by Yixue Zhang, Jili Guo, Fei Bian, Zhaowei Li, Chuandong Guo, Jialiang Zheng and Xiaodong Zhang
Agriculture 2025, 15(19), 2076; https://doi.org/10.3390/agriculture15192076 - 3 Oct 2025
Abstract
Crop diseases cause significant losses in agricultural production; early capture and identification of disease spores enable disease monitoring and prevention. This study experimentally optimized the preparation of Au@Ag NRS (Gold core@Silver shell Nanorods) sol as a Surface-Enhanced Raman Scattering (SERS) enhancement reagent via [...] Read more.
Crop diseases cause significant losses in agricultural production; early capture and identification of disease spores enable disease monitoring and prevention. This study experimentally optimized the preparation of Au@Ag NRS (Gold core@Silver shell Nanorods) sol as a Surface-Enhanced Raman Scattering (SERS) enhancement reagent via a modified seed-mediated growth method. Using an existing microfluidic chip developed by the research group, disease spores were separated and enriched, followed by combining Au@Ag NRS with Crop Disease Spores through electrostatic adsorption. Raman spectroscopy was employed to collect SERS fingerprint spectra of Crop Disease Spores. The spectra underwent baseline correction using Adaptive Least Squares (ALS) and standardization via Standard Normal Variate (SNV). Dimensionality reduction preprocessing was performed using Principal Component Analysis (PCA) and Successive Projections Algorithm combined with Competitive Adaptive Reweighted Sampling (SCARS). Classification was then executed using Support Vector Machine (SVM) and Multilayer Perceptron (MLP). The SCARS-MLP model achieved the highest accuracy at 97.92% on the test set, while SCARS-SVM, PCA-SVM, and SCARS-MLP models attained test set accuracy of 95.83%, 95.24%, and 96.55%, respectively. Thus, the proposed Au@Ag NRS-based SERS technology can be applied to detect airborne disease spores, establishing an early and precise method for Crop Disease detection. Full article
(This article belongs to the Special Issue Spectral Data Analytics for Crop Growth Information)
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58 pages, 5125 KB  
Review
Organic Fluorescent Sensors for Environmental Analysis: A Critical Review and Insights into Inorganic Alternatives
by Katia Buonasera, Maurilio Galletta, Massimo Rosario Calvo, Gianni Pezzotti Escobar, Antonio Alessio Leonardi and Alessia Irrera
Nanomaterials 2025, 15(19), 1512; https://doi.org/10.3390/nano15191512 - 2 Oct 2025
Abstract
The exponential increase in environmental pollutants due to industrialization, urbanization, and agricultural intensification has underscored the urgent need for sensitive, selective, and real-time monitoring technologies. Among emerging analytical tools, organic fluorescent sensors have demonstrated exceptional potential for detecting a wide range of pollutants [...] Read more.
The exponential increase in environmental pollutants due to industrialization, urbanization, and agricultural intensification has underscored the urgent need for sensitive, selective, and real-time monitoring technologies. Among emerging analytical tools, organic fluorescent sensors have demonstrated exceptional potential for detecting a wide range of pollutants in water, air, and soil, with a limit of detection (LOD) in the pM–µM range. This review critically examines recent advances in organic fluorescent sensors, focusing on their photophysical properties, molecular structures, sensing mechanisms, and environmental applications. Key categories of organic sensors, including small molecules, polymeric materials, and nanoparticle-based systems, are discussed, highlighting their advantages, such as biocompatibility, tunability, and cost-effectiveness. Comparative insights into inorganic fluorescent sensors, including quantum dots, are also provided, emphasizing their superior photostability and wide operating range (in some cases from pg/mL up to mg/mL) but limited biodegradability and higher toxicity. The integration of nanomaterials and microfluidic systems is presented as a promising route for developing portable, on-site sensing platforms. Finally, the review outlines current challenges and future perspectives, suggesting that fluorescent sensors, particularly organic ones, represent a crucial strategy toward sustainable environmental monitoring and pollutant management. Full article
28 pages, 3829 KB  
Review
Automated Platforms in C. elegans Research: Integration of Microfluidics, Robotics, and Artificial Intelligence
by Tasnuva Binte Mahbub, Parsa Safaeian and Salman Sohrabi
Micromachines 2025, 16(10), 1138; https://doi.org/10.3390/mi16101138 - 1 Oct 2025
Abstract
Caenorhabditis elegans is one of the most extensively studied model organisms in biology. Its advantageous features, including genetic homology with humans, conservation of disease pathways, transparency, short lifespan, small size and ease of maintenance have established it as a powerful system for research [...] Read more.
Caenorhabditis elegans is one of the most extensively studied model organisms in biology. Its advantageous features, including genetic homology with humans, conservation of disease pathways, transparency, short lifespan, small size and ease of maintenance have established it as a powerful system for research in aging, genetics, molecular biology, disease modeling and drug discovery. However, traditional methods for worm handling, culturing, scoring and imaging are labor-intensive, low throughput, time consuming, susceptible to operator variability and environmental influences. Addressing these challenges, recent years have seen rapid innovation spanning microfluidics, robotics, imaging platforms and AI-driven analysis in C. elegans-based research. Advances include micromanipulation devices, robotic microinjection systems, automated worm assays and high-throughput screening platforms. In this review, we first summarize foundational developments prior to 2020 that shaped the field, then highlight breakthroughs from the past five years that address key limitations in throughput, reproducibility and scalability. Finally, we discuss ongoing challenges and future directions for integrating these technologies into next-generation automated C. elegans research. Full article
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19 pages, 19265 KB  
Article
A Novel Microfluidic Platform for Circulating Tumor Cell Identification in Non-Small-Cell Lung Cancer
by Tingting Tian, Shanni Ma, Yan Wang, He Yin, Tiantian Dang, Guangqi Li, Jiaming Li, Weijie Feng, Mei Tian, Jinbo Ma and Zhijun Zhao
Micromachines 2025, 16(10), 1136; https://doi.org/10.3390/mi16101136 - 1 Oct 2025
Abstract
Circulating tumor cells (CTCs) are crucial biomarkers for lung cancer metastasis and recurrence, garnering significant clinical attention. Despite this, efficient and cost-effective detection methods remain scarce. Consequently, there is an urgent demand for the development of highly sensitive CTC detection technologies to enhance [...] Read more.
Circulating tumor cells (CTCs) are crucial biomarkers for lung cancer metastasis and recurrence, garnering significant clinical attention. Despite this, efficient and cost-effective detection methods remain scarce. Consequently, there is an urgent demand for the development of highly sensitive CTC detection technologies to enhance lung cancer diagnosis and treatment. This study utilized microspheres and A549 cells to model CTCs, assessing the impact of acoustic field forces on cell viability and proliferation and confirming capture efficiency. Subsequently, CTCs from the peripheral blood of patients with lung cancer were captured and identified using fluorescence in situ hybridization, and the results were compared to the immunomagnetic bead method to evaluate the differences between the techniques. Finally, epidermal growth factor receptor (EGFR) mutation analysis was conducted on CTC-positive samples. The findings showed that acoustic microfluidic technology effectively captures microspheres, A549 cells, and CTCs without compromising cell viability or proliferation. Moreover, EGFR mutation analysis successfully identified mutation types in four samples, establishing a basis for personalized targeted therapy. In conclusion, acoustic microfluidic technology preserves cell viability while efficiently capturing CTCs. When integrated with EGFR mutation analysis, it provides robust support for the precise diagnosis and treatment of lung cancer as well as personalized drug therapy. Full article
(This article belongs to the Special Issue Application of Microfluidic Technology in Bioengineering)
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27 pages, 981 KB  
Review
Organ-on-a-Chip Models of the Female Reproductive System: Current Progress and Future Perspectives
by Min Pan, Huike Chen, Kai Deng and Ke Xiao
Micromachines 2025, 16(10), 1125; https://doi.org/10.3390/mi16101125 - 30 Sep 2025
Abstract
The female reproductive system represents a highly complex regulatory network governing critical physiological functions, encompassing reproductive capacity and endocrine regulation that maintains female physiological homeostasis. The in vitro simulation system provides a novel tool for biomedical research and can be used as physiological [...] Read more.
The female reproductive system represents a highly complex regulatory network governing critical physiological functions, encompassing reproductive capacity and endocrine regulation that maintains female physiological homeostasis. The in vitro simulation system provides a novel tool for biomedical research and can be used as physiological and pathological models to study the female reproductive system. Recent advances in this technology have evolved from 2D and 3D printing to organ-on-a-chip (OOC) and microfluidic systems, which has emerged as a transformative platform for modeling the female reproductive system. These microphysiological systems integrate microfluidics, 3D cell culture, and biomimetic scaffolds to replicate key functional aspects of reproductive organs and tissues. They have enabled precise simulation of hormonal regulation, embryo-endometrium interactions, and disease mechanisms such as endometriosis and gynecologic cancers. This review highlights the current state of female reproductive OOCs, including ovary-, uterus-, and fallopian tube-on-a-chip system, their applications in assisted reproduction and disease modeling, and the technological hurdles to their widespread application. Though significant barriers remain in scaling OOCs for high-throughput drug screening, standardizing protocols for clinical applications, and validating their predictive value against human patient outcomes, OOCs have emerged as a transformative platform to model complex pathologies, offering unprecedented insights into disease mechanisms and personalized therapeutic interventions. Future directions, including multi-organ integration for systemic reproductive modeling, incorporation of microbiome interactions, and clinical translation for mechanisms of drug action, will facilitate unprecedented insights into reproductive physiology and pathology. Full article
(This article belongs to the Special Issue Microfluidics in Biomedical Research)
14 pages, 2970 KB  
Article
Cost-Effective and High-Throughput LPS Detection via Microdroplet Technology in Biopharmaceuticals
by Adriano Colombelli, Daniela Lospinoso, Valentina Arima, Vita Guarino, Alessandra Zizzari, Monica Bianco, Elisabetta Perrone, Luigi Carbone, Roberto Rella and Maria Grazia Manera
Biosensors 2025, 15(10), 649; https://doi.org/10.3390/bios15100649 - 30 Sep 2025
Abstract
Lipopolysaccharides (LPS) from Gram-negative bacteria represent a significant challenge across various industries due to their prevalence and pathogenicity and the limitations of existing detection methods. Traditional approaches, such as the rabbit pyrogen test (RPT) and the Limulus Amebocyte Lysate (LAL) assay, have served [...] Read more.
Lipopolysaccharides (LPS) from Gram-negative bacteria represent a significant challenge across various industries due to their prevalence and pathogenicity and the limitations of existing detection methods. Traditional approaches, such as the rabbit pyrogen test (RPT) and the Limulus Amebocyte Lysate (LAL) assay, have served as gold standards for endotoxin detection. However, these methods are constrained by high costs, lengthy processing times, environmental concerns, and the need for significant reagent volumes, which limit their scalability and application in resource-limited settings. In this study, we introduce an innovative microfluidic platform that integrates the LAL assay within microdroplets, addressing the critical limitations of traditional techniques. By leveraging the precise fluid control and reaction isolation offered by microdroplet technology, the system reduces reagent consumption, enhances sensitivity, and enables high-throughput analysis. Calibration tests were performed to validate the platform’s ability to detect LPS, using colorimetric measurements. Results demonstrated comparable or improved performance relative to traditional systems, achieving lower detection limits and greater accuracy. This work demonstrates a proof-of-concept miniaturisation of the pharmacopoeial LAL assay. The method yielded low intra-assay variability (σ ≈ 0.002 OD; CV ≈ 0.9% over n = 50 droplets per point) and a LOD estimated from calibration statistics after path-length normalisation. Broader adoption will require additional comparative validation and standardisation. This scalable, cost-effective, and environmentally sustainable approach offers a practical solution for endotoxin detection in clinical diagnostics, biopharmaceutical production, and environmental monitoring. The proposed technology paves the way for advanced LPS detection methods that meet stringent safety standards while improving efficiency, affordability, and adaptability for diverse applications. Full article
(This article belongs to the Special Issue Advanced Microfluidic Devices and MEMS in Biosensing Applications)
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14 pages, 4946 KB  
Article
A Variable Cross-Section Microfluidic Channel for Simultaneous Reproduction of Low Oscillatory and Pulsatile Wall Shear Stress at the Carotid Bifurcation: A Computational Fluid Dynamics-Based Study
by Yong-Jiang Li, Hui-Min Hou, Qi-Fei Hu, Li-Jin Yuan, Chun-Dong Xue, Dong Chen, Xu-Qu Hu and Kai-Rong Qin
Biosensors 2025, 15(10), 648; https://doi.org/10.3390/bios15100648 - 30 Sep 2025
Abstract
Pulsatile blood flow generates complex wall shear stress (WSS) patterns at the carotid bifurcation, which critically regulate endothelial function and structure. While physiological pulsatile WSS (PWSS) is essential for maintaining vascular health, low oscillatory WSS (OWSS) near the carotid sinus is closely associated [...] Read more.
Pulsatile blood flow generates complex wall shear stress (WSS) patterns at the carotid bifurcation, which critically regulate endothelial function and structure. While physiological pulsatile WSS (PWSS) is essential for maintaining vascular health, low oscillatory WSS (OWSS) near the carotid sinus is closely associated with endothelial dysfunction, atherosclerotic plaque formation, and stenosis. Reproducing these hemodynamic conditions in vitro is therefore crucial for investigating endothelial mechanobiology and elucidating the pathogenesis of atherosclerosis. Although microfluidic technologies have emerged as promising platforms for simulating either pulsatile or oscillatory WSS, a system capable of simultaneously replicating both characteristic waveforms—as found in vivo at the carotid bifurcation—remains undeveloped. In this study, we designed a variable cross-section microfluidic channel using Computational Fluid Dynamics (CFD) simulations. Numerical results demonstrate that the optimized channel accurately reproduces low OWSS at a stepped section emulating the carotid sinus, alongside high PWSS in a downstream uniform section. Vortex formation induced by the step structure is identified as key to generating low OWSS, influenced by step height, channel width ratio, and input flow rate. This work provides a novel and robust methodology for designing microfluidic systems that mimic complex hemodynamic microenvironments, facilitating future studies on the interplay between distinct WSS patterns and endothelial dysfunction. Full article
(This article belongs to the Special Issue Microfluidics for Biomedical Applications (3rd Edition))
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33 pages, 2985 KB  
Review
A Review of the Application of Compliance Phenomenon in Particle Separation Within Microfluidic Systems
by Wei Wang, Jin Yan, Junsheng Wang, Yuezhu Wang, Ge Chen, Zihao Weng, Hongchen Pang, Xianzhang Wang and Dapeng Zhang
Micromachines 2025, 16(10), 1115; https://doi.org/10.3390/mi16101115 - 29 Sep 2025
Abstract
Microfluidic chips made of polydimethylsiloxane (PDMS) have shown significant application potential in aquatic environments with high microbial density, such as “marine ranches”, due to their high-throughput, high-efficiency and high-precision detection capabilities. This technology can rapidly identify pathogenic microorganisms or harmful particles in aquaculture [...] Read more.
Microfluidic chips made of polydimethylsiloxane (PDMS) have shown significant application potential in aquatic environments with high microbial density, such as “marine ranches”, due to their high-throughput, high-efficiency and high-precision detection capabilities. This technology can rapidly identify pathogenic microorganisms or harmful particles in aquaculture systems, thereby providing urgently needed innovative methods for implementing preventive measures and enhancing aquaculture productivity. By regulating the micro-nano scale channel structure, microfluidic technology can precisely control fluid flow patterns, offering new insights and effective solutions for microbiological research and the separation and analysis of particulate matter. This paper first provides a concise overview of the application of microfluidic chip technology in the analysis of marine microorganisms. Subsequently, it focuses on the “compliance” phenomenon in PDMS-based microfluidic systems, systematically reviewing the potential mechanisms, latest progress and impacts of compliance behavior in mechanically elastic materials such as PDMS. Additionally, this article also investigates the role of “compliance” in key processes of microfluidic technology application, including the capture, separation, enrichment and detection of microorganisms and particles. Moreover, the relationship between surface wettability engineering and compliance phenomena is also explored. We believe that this review will contribute to enhancing the understanding and control of the mechanical behavior of microfluids and the particles they carry within microfluidic systems, providing valuable theoretical insights and practical guidance for researchers in this field. Full article
(This article belongs to the Special Issue Exploring the Potential Applications of Microfluidics)
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38 pages, 1612 KB  
Review
Microengineered Breast Cancer Models: Shaping the Future of Personalized Oncology
by Tudor-Alexandru Popoiu, Anca Maria Cimpean, Florina Bojin, Simona Cerbu, Miruna-Cristiana Gug, Catalin-Alexandru Pirvu, Stelian Pantea and Adrian Neagu
Cancers 2025, 17(19), 3160; https://doi.org/10.3390/cancers17193160 - 29 Sep 2025
Abstract
Background: Breast cancer remains the most prevalent malignancy in women worldwide, characterized by remarkable genetic, molecular, and clinical heterogeneity. Traditional preclinical models have significantly advanced our understanding of tumor biology, yet consistently fall short in recapitulating the complexity of the human tumor [...] Read more.
Background: Breast cancer remains the most prevalent malignancy in women worldwide, characterized by remarkable genetic, molecular, and clinical heterogeneity. Traditional preclinical models have significantly advanced our understanding of tumor biology, yet consistently fall short in recapitulating the complexity of the human tumor microenvironment (TME), immune, and metastatic behavior. In recent years, breast cancer-on-a-chip (BCOC) have emerged as powerful microengineered systems that integrate patient-derived cells, stromal and immune components, and physiological stimuli such as perfusion, hypoxia, and acidic milieu within controlled three-dimensional microenvironments. Aim: To comprehensively review the BCOC development and application, encompassing fabrication materials, biological modeling of key subtypes (DCIS, luminal A, triple-negative), dynamic tumor–stroma–immune crosstalk, and organotropic metastasis to bone, liver, brain, lungs, and lymph nodes. Methods: We selected papers from academic trusted databases (PubMed, Web of Science, Google Scholar) by using Breast Cancer, Microfluidic System, and Breast Cancer on a Chip as the main search terms. Results: We critically discuss and highlight how microfluidic systems replicate essential features of disease progression—such as epithelial-to-mesenchymal transition, vascular invasion, immune evasion, and therapy resistance—with unprecedented physiological relevance. Special attention has been paid to the integration of liquid biopsy technologies within microfluidic platforms for non-invasive, real-time analysis of circulating tumor cells, cell-free nucleic acids, and exosomes. Conclusions: In light of regulatory momentum toward reducing animal use in drug development, BCOC platforms stand at the forefront of a new era in precision oncology. By bridging biological fidelity with engineering innovation, these systems hold immense potential to transform cancer research, therapy screening, and personalized medicine. Full article
(This article belongs to the Section Methods and Technologies Development)
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25 pages, 9895 KB  
Review
Harnessing Microfluidics for the Effective and Precise Synthesis of Advanced Materials
by Xinlei Qi and Guoqing Hu
Micromachines 2025, 16(10), 1106; https://doi.org/10.3390/mi16101106 - 28 Sep 2025
Abstract
Microfluidic methods are powerful platforms for synthesizing advanced functional materials because they allow for precise control of microscale reaction environments. Microfluidics manipulates reactants in lab-on-a-chip systems to enable the fabrication of highly uniform materials with tunable properties, which are crucial for drug delivery, [...] Read more.
Microfluidic methods are powerful platforms for synthesizing advanced functional materials because they allow for precise control of microscale reaction environments. Microfluidics manipulates reactants in lab-on-a-chip systems to enable the fabrication of highly uniform materials with tunable properties, which are crucial for drug delivery, diagnostics, catalysis, and nanomaterial design. This review emphasizes recent progress in microfluidic technologies for synthesizing functional materials, with a focus on polymeric, hydrogel, lipid-based, and inorganic particles. Microfluidics provides exceptional control over the size, morphology, composition, and surface chemistry of materials, thereby enhancing their performance through uniformity, tunability, hierarchical structuring, and on-chip functionalization. Our review provides novel insights by linking material design strategies with fabrication methods tailored to biomedical applications. We also discuss emerging trends, such as AI-driven optimization, automation, and sustainable microfluidic practices, offering a practical and forward-looking perspective. As the field advances toward robust, standardized, and user-friendly platforms, microfluidics has the potential to increase industrial adoption and enable on-demand solutions in nanotechnology and personalized medicine. Full article
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38 pages, 9769 KB  
Review
Label-Free Cancer Detection Methods Based on Biophysical Cell Phenotypes
by Isabel Calejo, Ana Catarina Azevedo, Raquel L. Monteiro, Francisco Cruz and Raphaël F. Canadas
Bioengineering 2025, 12(10), 1045; https://doi.org/10.3390/bioengineering12101045 - 28 Sep 2025
Abstract
Progress in clinical diagnosis increasingly relies on innovative technologies and advanced disease biomarker detection methods. While cell labeling remains a well-established technique, label-free approaches offer significant advantages, including reduced workload, minimal sample damage, cost-effectiveness, and simplified chip integration. These approaches focus on the [...] Read more.
Progress in clinical diagnosis increasingly relies on innovative technologies and advanced disease biomarker detection methods. While cell labeling remains a well-established technique, label-free approaches offer significant advantages, including reduced workload, minimal sample damage, cost-effectiveness, and simplified chip integration. These approaches focus on the morpho-biophysical properties of cells, eliminating the need for labeling and thus reducing false results while enhancing data reliability and reproducibility. Current label-free methods span conventional and advanced technologies, including phase-contrast microscopy, holographic microscopy, varied cytometries, microfluidics, dynamic light scattering, atomic force microscopy, and electrical impedance spectroscopy. Their integration with artificial intelligence further enhances their utility, enabling rapid, non-invasive cell identification, dynamic cellular interaction monitoring, and electro-mechanical and morphological cue analysis, making them particularly valuable for cancer diagnostics, monitoring, and prognosis. This review compiles recent label-free cancer cell detection developments within clinical and biotechnological laboratory contexts, emphasizing biophysical alterations pertinent to liquid biopsy applications. It highlights interdisciplinary innovations that allow the characterization and potential identification of cancer cells without labeling. Furthermore, a comparative analysis addresses throughput, resolution, and detection capabilities, thereby guiding their effective deployment in biomedical research and clinical oncology settings. Full article
(This article belongs to the Special Issue Label-Free Cancer Detection)
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24 pages, 6138 KB  
Article
Research on Liquid Flow Pulsation Reduction in Microchannel of Pneumatic Microfluidic Chip Based on Membrane Microvalve
by Xuling Liu, Le Bo, Yusong Zhang, Chaofeng Peng, Kaiyi Zhang, Shaobo Jin, Guoyong Ye and Jinggan Shao
Fluids 2025, 10(10), 256; https://doi.org/10.3390/fluids10100256 - 28 Sep 2025
Abstract
The unsteady and discontinuous liquid flow in the microchannel affects the efficiency of sample mixing, molecular detection, target acquisition, and biochemical reaction. In this work, an active method of reducing the flow pulsation in the microchannel of a pneumatic microfluidic chip is proposed [...] Read more.
The unsteady and discontinuous liquid flow in the microchannel affects the efficiency of sample mixing, molecular detection, target acquisition, and biochemical reaction. In this work, an active method of reducing the flow pulsation in the microchannel of a pneumatic microfluidic chip is proposed by using an on-chip membrane microvalve as a valve chamber damping hole or a valve chamber accumulator. The structure, working principle, and multi-physical model of the reducing element of reducing the flow pulsation in a microchannel are presented. When the flow pulsation in the microchannel is sinusoidal, square wave, or pulse, the simulation effect of flow pulsation reduction is given when the membrane valve has different permutations and combinations. The experimental results show that the inlet flow of the reducing element is a square wave pulsation with an amplitude of 0.1 mL/s and a period of 2 s, the outlet flow of the reducing element is assisted by 0.017 and the fluctuation frequency is accompanied by a decrease. The test data and simulation results verify the rationality of the flow reduction element in the membrane valve microchannel, the correctness of the theoretical model, and the practicability of the specific application, which provides a higher precision automatic control technology for the microfluidic chip with high integration and complex reaction function. Full article
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25 pages, 1772 KB  
Review
Microfluidic-Based Technologies for Crossing the Blood–Brain Barrier Against Alzheimer’s Disease: Novel Strategies and Challenges
by Irene Ferrari, Emanuele Limiti, Sara Maria Giannitelli, Marcella Trombetta, Alberto Rainer, Marcello D’Amelio, Livia La Barbera and Manuele Gori
Int. J. Mol. Sci. 2025, 26(19), 9478; https://doi.org/10.3390/ijms26199478 - 27 Sep 2025
Abstract
Alzheimer’s disease (AD) represents the major cause of dementia worldwide, involving different etiopathogenetic mechanisms, but with no definitive cure. The efficacy of new AD drugs is limited by the multifactorial disease nature that involves several targets, but also by the difficult penetration across [...] Read more.
Alzheimer’s disease (AD) represents the major cause of dementia worldwide, involving different etiopathogenetic mechanisms, but with no definitive cure. The efficacy of new AD drugs is limited by the multifactorial disease nature that involves several targets, but also by the difficult penetration across the blood–brain barrier (BBB) for reaching the target area at therapeutic doses. Thus, the inability of many compounds to efficiently bypass the BBB makes it arduous to treat the disease. Furthermore, the lack of more representative BBB in vitro models than conventional 2D cultures, and xenogeneic animal models that recapitulate AD pathogenesis, makes it even more difficult to develop definitive cures. In this context, microfluidics has emerged as a promising tool, offering advanced strategies for simulating the BBB, investigating its crossing mechanisms, and developing nanocarriers that successfully pass the BBB for brain-targeting, with particular interest in pathological states. The advantages of microfluidic platforms for studying the BBB role in pathophysiological conditions might herald more tailored and effective approaches based on functionalized nanosystems for treating AD. Here, we provide an overview of the latest advances in microfluidic-based technologies both for the synthesis of nanodrug delivery systems, and for developing advanced models of the BBB-on-a-chip to simulate this biological barrier, facing open challenges in AD, and improving our understanding of the disease. Full article
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31 pages, 1838 KB  
Review
Emerging Technologies for the Diagnosis of Urinary Tract Infections: Advances in Molecular Detection and Resistance Profiling
by Baiken Baimakhanova, Amankeldi Sadanov, Vladimir Berezin, Gul Baimakhanova, Lyudmila Trenozhnikova, Saltanat Orasymbet, Gulnaz Seitimova, Sundetgali Kalmakhanov, Gulzakira Xetayeva, Zhanserik Shynykul, Aizat Seidakhmetova and Aknur Turgumbayeva
Diagnostics 2025, 15(19), 2469; https://doi.org/10.3390/diagnostics15192469 - 26 Sep 2025
Abstract
Background/Objectives: Urinary tract infections (UTIs) represent a considerable challenge within the field of clinical medicine, as they are responsible for significant morbidity and intensify the operational pressures encountered by healthcare systems. Conventional diagnostic approaches, which include symptom evaluation, dipstick urinalysis, and standard [...] Read more.
Background/Objectives: Urinary tract infections (UTIs) represent a considerable challenge within the field of clinical medicine, as they are responsible for significant morbidity and intensify the operational pressures encountered by healthcare systems. Conventional diagnostic approaches, which include symptom evaluation, dipstick urinalysis, and standard urine culture, often demonstrate inadequacies in identifying atypical clinical manifestations, infections with low bacterial counts, or pathogens that show growth difficulties under typical laboratory conditions. These limitations undermine diagnostic accuracy and hinder timely therapeutic measures. Methods: The present manuscript is a systematic review conducted in accordance with PRISMA guidelines. A structured search was performed in PubMed, Scopus, and Google Scholar, yielding 573 records, of which 107 studies were included for qualitative synthesis. The primary aim of this systematic review is to evaluate both conventional and emerging diagnostic methods for UTIs, with specific objectives of assessing their clinical applicability, limitations, and potential to improve patient outcomes. Results: Recent progress in diagnostic technologies offers promising alternatives. Molecular-based assays, such as multiplex polymerase chain reaction, matrix-assisted laser desorption ionization mass spectrometry, and next-generation sequencing, have substantially improved both the precision and efficiency of pathogen identification. Furthermore, contemporary techniques for evaluating antimicrobial susceptibility, including microfluidic systems and real-time phenotypic resistance assays, enable clinicians to execute targeted therapeutic strategies with enhanced efficacy. Results of this synthesis indicate that while conventional diagnostics remain the cornerstone for uncomplicated cases, innovative molecular and phenotypic approaches demonstrate superior performance in detecting low-count bacteriuria, atypical pathogens, and resistance determinants, particularly in complicated and recurrent infections. These innovations support antimicrobial stewardship by reducing dependence on empirical antibiotic treatment and lessening the risk of resistance emergence. Conclusions: Nonetheless, the incorporation of these technologies into clinical practice requires careful consideration of implementation costs, standardization protocols, and the necessary training of healthcare professionals. In conclusion, this systematic review highlights that emerging molecular diagnostics and resistance-profiling tools offer substantial promise in complementing or enhancing traditional methods, but their widespread adoption will depend on robust validation, cost-effectiveness, and integration into clinical workflows. Full article
(This article belongs to the Special Issue Urinary Tract Infections: Advances in Diagnosis and Management)
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23 pages, 1450 KB  
Review
Bacterial Systematic Genetics and Integrated Multi-Omics: Beyond Static Genomics Toward Predictive Models
by Tatsuya Sakaguchi, Yuta Irifune, Rui Kamada and Kazuyasu Sakaguchi
Int. J. Mol. Sci. 2025, 26(19), 9326; https://doi.org/10.3390/ijms26199326 - 24 Sep 2025
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Abstract
The field of bacterial systems biology is rapidly advancing beyond static genomic analyses, and moving toward dynamic, integrative approaches that connect genetic variation with cellular function. This review traces the progression from genome-wide association studies (GWAS) to multi-omics frameworks that incorporate transcriptomics, proteomics, [...] Read more.
The field of bacterial systems biology is rapidly advancing beyond static genomic analyses, and moving toward dynamic, integrative approaches that connect genetic variation with cellular function. This review traces the progression from genome-wide association studies (GWAS) to multi-omics frameworks that incorporate transcriptomics, proteomics, and interactome mapping. We emphasize recent breakthroughs in high-resolution transcriptomics, including single-cell, spatial, and epitranscriptomic technologies, which uncover functional heterogeneity and regulatory complexity in bacterial populations. At the same time, innovations in proteomics, such as data-independent acquisition (DIA) and single-bacterium proteomics, provide quantitative insights into protein-level mechanisms. Experimental and AI-assisted strategies for mapping protein–protein interactions help to clarify the architecture of bacterial molecular networks. The integration of these omics layers through quantitative trait locus (QTL) analysis establishes mechanistic links between single-nucleotide polymorphisms and systems-level phenotypes. Despite persistent challenges such as bacterial clonality and genomic plasticity, emerging tools, including deep mutational scanning, microfluidics, high-throughput genome editing, and machine-learning approaches, are enhancing the resolution and scope of bacterial genetics. By synthesizing these advances, we describe a transformative trajectory toward predictive, systems-level models of bacterial life. This perspective opens new opportunities in antimicrobial discovery, microbial engineering, and ecological research. Full article
(This article belongs to the Special Issue Benchmarking of Modeling and Informatic Methods in Molecular Sciences)
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