Search Results (751)

Radiation-based treatments have emerged as important environmental and postharvest regulatory tools for improving the quality of edible mushrooms. Visible light, ultraviolet (UV) radiation, gamma irradiation, and pulsed-light treatments influence mushroom growth, morphogenesis, nutrient accumulation, antioxidant capacity, and storage performance through distinct physiological and molecular mechanisms. However, current findings remain fragmented, and a comprehensive synthesis of their regulatory effects and underlying mechanisms is lacking. This systematic review was conducted following the PRISMA 2020 framework. A structured literature search was performed in the Web of Science, PubMed, and CNKI databases. After screening and eligibility assessment, 111 studies were included in the qualitative synthesis. The available evidence indicates that radiation-based treatments exert stage-dependent and species-specific effects on edible mushrooms. Visible light primarily regulates morphogenesis through photoreceptor-mediated signaling pathways, whereas UV radiation promotes vitamin D₂ biosynthesis and antioxidant accumulation through photochemical and reactive oxygen species (ROS)-related mechanisms. Gamma irradiation and pulsed-light treatments are mainly applied during postharvest handling to suppress microbial contamination, delay browning and senescence, and extend shelf life. Based on the available evidence, a unified mechanistic framework linking signal perception, ROS regulation, transcriptional reprogramming, metabolic responses, and quality formation is proposed. Despite these advances, substantial challenges remain, including limited mechanistic understanding, insufficient integration of multi-omics evidence, lack of standardized treatment protocols, and difficulties in industrial-scale implementation. Future research should focus on multi-radiation synergistic strategies, precision environmental regulation, and intelligent cultivation systems. Overall, this review provides a comprehensive synthesis of current evidence regarding radiation-mediated quality regulation in edible mushrooms and offers a theoretical basis for optimizing mushroom production and developing sustainable postharvest preservation technologies. Full article

Extracellular enzyme stoichiometry is a key indicator for assessing nutrient limitation experienced by soil microorganisms. Yet, the characteristics of enzyme-inferred microbial nutrient limitation in rhizosphere soil under the combined agricultural practices of intercropping and straw retention remain unclear. Here, we conducted a field experiment in the black soil region of Northeast China to quantify the effects of intercropping and straw retention on soil nutrients, microbial biomass, extracellular enzyme activities, and their C:N:P stoichiometry in the rhizosphere of maize and peanut. Our results showed that compared with sole cropping, intercropping increased soil organic carbon (SOC) by 6.21–13.57%, total nitrogen (TN) by 8.57–12.49%, and total phosphorus (TP) by 12.01–40.29% in the rhizosphere. The vector analysis revealed an average vector length (VL) of 1.68 and 1.57 for extracellular enzymes in the rhizosphere soil of maize and peanut, with a vector angle (VA) of 37.80° and 34.67°, respectively. These values suggest that soil microorganisms in the rhizosphere of both crops experienced C limitation, and that the degree of enzyme-inferred N limitation was modulated by microbial C acquisition strategies, with a dynamic trade-off between the two. This N limitation was more pronounced in the peanut rhizosphere. Notably, the combined treatment of intercropping and full straw retention increased the VA of peanut by 5.38%, corresponding to a partial alleviation of enzyme-inferred N limitation in the rhizosphere soil. The extracellular enzyme C:N:P stoichiometry in the rhizosphere soil of maize and peanut was 1.33:1.29:1.00 and 0.89:1.29:1.00, respectively. Microbial biomass nitrogen (MBN) was the primary factor affecting enzyme-inferred microbial nutrient limitation (explaining 54.6% of variation). The extracellular enzyme stoichiometric characteristics of rhizosphere soil differed significantly between the two crops. Intercropping had a stronger impact on rhizosphere microbial nutrient limitation than straw retention, and their synergistic effect was associated with a partial alleviation of rhizosphere enzyme-inferred N limitation by enhancing extracellular enzyme activity. These findings demonstrate that integrated intercropping and straw retention can support sustainable soil management in black soil agroecosystems. Full article

The use of Kluyveromyces marxianus in mixed cultures for fermentation processes has become increasingly relevant. This yeast is characterized by rapid growth, thermotolerance, broad sugar utilization, and the ability to produce aroma-active compounds. In this study, we evaluated changes in the growth and volatilome of a K. marxianus strain isolated from agave fermentation under microbial competition induced by co-cultivation interactions and nutritional limitation induced by a nutrient-deficient medium. The results indicate that these stress factors are significant drivers of metabolic changes, leading to substantial increases in the concentrations of key aromatic compounds. Stress-free conditions favor cell growth and the production of stable, reproducible volatile profiles, which is advantageous for batch-to-batch consistency (as in wine or mezcal production). While microbial competition and nutritional limitation induce reduced cell growth and loss of viability, they also lead to increased aromatic diversity, particularly the synthesis of β-phenethyl acetate, ethyl octanoate, and ethyl hexanoate. These findings demonstrate a relationship between environmental stress and the development of volatile profile complexity, offering new insights into harnessing stress-induced changes in the volatilome to optimize the sensory profile of traditional fermentations. Full article

The gut microbiota influences host health, development, nutrition, and behavior, positioning it as a frontier research area in life sciences. Bactrocera dorsalis is a major agricultural pest, with a short life cycle, ease of laboratory rearing, and the availability of germ-free larvae. The gut microbiota of B. dorsalis is complex and relatively insensitive to environmental influences. Due to these advantages, B. dorsalis has emerged as a promising model organism for gut microbiota research. This review synthesizes the advantages of B. dorsalis as a model organism, detailing its gut structure and the composition of its microbiota across developmental stages, sexes, diets, and geographical populations—highlighting the dominance of Enterobacteriaceae as a core component. Key functional roles of gut microbiota in B. dorsalis are elucidated, including nutrient provisioning, regulation of development and reproduction, enhancement of environmental adaptability, behavioral modulation, pesticide resistance, and immune interactions. The mechanisms underpinning gut microbiota homeostasis, involving the host Duox/ROS system, NOX enzymes, and the Imd pathway, are also discussed. Limitations are addressed, alongside future directions for leveraging genetic tools to dissect host–microbe interplay. Furthermore, the potential applications of gut microbiota research—including probiotics for Sterile Insect Technique optimization, microbial-based attractants, and paratransgenesis for pest control—are emphasized. Collectively, B. dorsalis offers a platform for understanding intricate host–microbe interplay and inspires novel pest management strategies. Full article

Background: Kidney transplantation is the preferred treatment for end-stage kidney disease (ESKD), but long-term outcomes remain limited by chronic allograft injury, infections, metabolic complications, and cardiovascular risk. Gut microbiota alterations and microbiota-derived metabolites may influence immune regulation, inflammation, drug metabolism, and graft outcomes through the gut–kidney axis. This review summarizes evidence on the gut microbiota in kidney transplantation, emphasizing immune tolerance, complications, cardiovascular risk, graft function, and perspectives. Methods: A structured search was conducted in PubMed, Scopus, and Web of Science to May 2026. Eligible publications included studies involving kidney transplant recipients (KTR), kidney disease or solid organ transplant populations, and mechanistic models. Evidence was synthesized narratively. Results: Gut microbiota alterations in KTR reflect pre-transplant dysbiosis and post-transplant exposures, including antibiotics, immunosuppression, infection, diet, hospitalization, and graft function. Dietary factors and nutrient-derived substrates may modulate microbial composition and production of relevant metabolites, including short-chain fatty acids (SCFAs), trimethylamine N-oxide (TMAO), tryptophan-derived compounds, bile acid derivatives, and uremic toxins. Microbiota-related pathways may involve barrier dysfunction, microbial translocation, innate immune activation, altered regulatory T cell/T helper 17 (Treg/Th17) balance, metabolite signaling, uremic toxin generation, and endothelial stress. Clinical studies associate dysbiosis and microbial metabolites with diarrhea, infections, delayed graft function (DGF), rejection-related shifts, tacrolimus variability, cardiovascular risk, graft dysfunction, graft failure, and mortality. Most findings need validation. Conclusions: Gut microbiota signatures and microbial metabolites are promising markers of transplant-related risk, but not established causal determinants or therapeutic targets. Clinical translation requires standardized methods, multi-omics integration, and prospective patient- and graft-centered trials. Full article

Soil acidification is a widespread consequence of intensive agriculture and represents a major abiotic stress affecting plant performance, nutrient availability, and ecosystem functioning. Long-term tea (Camellia sinensis) plantations provide model systems of chronic acidification, where sustained low pH imposes strong environmental filtering on soil microbial communities. Although microbial responses to acidification have been extensively studied, research has focused predominantly on bacteria and fungi, leaving other key functional groups, particularly protists, largely overlooked. Here, we synthesize current knowledge on microbial communities in acidified soils and highlight trophic interactions, especially protist-mediated regulation, as a potentially critical but underexplored dimension linking abiotic stress to plant–soil processes. We propose that soil acidification may not only filter microbial community composition but also reshape trophic interactions. Based on evidence from other soil systems, protist-mediated trophic interactions could influence nutrient cycling, pathogen suppression, and ultimately plant responses under stress conditions. Integrating environmental filtering with trophic perspectives provides a conceptual framework for understanding microbiome dynamics in acidified soils. However, direct evidence linking protist-mediated trophic regulation to ecosystem functioning and plant performance in tea plantation soils remains limited and requires experimental validation. We further suggest that these systems provide unique opportunities to investigate how abiotic constraints and biotic interactions jointly shape plant performance. Addressing this gap is essential for advancing predictive understanding of plant–microbiome interactions under ongoing environmental change. Full article

Anaerobic co-digestion (AcoD) is increasingly applied in sewage-sludge management and organic-waste treatment because it can improve methane recovery, stabilize mixed substrates, and reduce life-cycle greenhouse-gas emissions under appropriate feedstock and operating conditions. However, existing reviews still focus mainly on feedstock types or isolated enhancement measures and less often connect synergistic mechanisms with engineering implementation and carbon outcomes. The specific novelty of this review is to connect functional feedstock classification, mechanism boundaries, engineering controls, and carbon-performance evaluation within one sludge-centered AcoD framework. This review synthesizes recent progress in AcoD of sewage sludge, food waste, livestock manure, crop residues, and industrial organic streams through a chain from feedstock traits to substrate interactions, microbial responses, engineering performance, and carbon benefits. Feedstocks are reorganized by function rather than by waste name, highlighting how carbon-to-nitrogen contrast, buffering capacity, hydrolysis recalcitrance, and inhibitor profiles jointly define synergy potential. Key mechanisms, including C/N balancing, hydrolysis complementarity, inhibitor mitigation, and direct interspecies electron transfer (DIET), are discussed together with their applicability limits. Representative evidence shows methane-yield or methane-production increases of about 41–55% for selected food-waste–manure blends, approximately 45% for rice–straw–pig manure systems after cellulolytic pretreatment, and approximately 16–55% for selected additive strategies; these values are illustrative rather than directly comparable because the underlying studies differ in substrates, baselines, reactor configurations, pretreatment conditions, and operating parameters. The review then translates mechanism into practice through pretreatment, reactor-selection templates, operating windows, additive reinforcement, and artificial-intelligence-assisted monitoring. Representative cases and life-cycle evidence indicate that AcoD can improve methane productivity while lowering greenhouse-gas emissions relative to landfill or mono-digestion pathways when energy substitution and nutrient recycling are credibly counted. Remaining bottlenecks include incomplete kinetic integration, limited DIET quantification, insufficient reporting of quantitative operating ranges and additive dosages, and weak coupling of carbon, economics, and regional feedstock dynamics. The revised review therefore treats AcoD as a sludge-centered mechanism-to-engineering framework and highlights two transferability gaps that require stronger standardization: biodegradation/toxicity testing and local co-substrate logistics. Full article

Abiotic stresses affect the growth of tea plants (Camellia sinensis) and reduce their yield and quality. The tea plant is a perennial crop. Its adaptability to abiotic stresses and the formation of quality depend not only on internal physiological regulation, but also on long-term interactions with the surrounding soil environment. However, how abiotic stresses reshape the tea rhizosphere community structure, and the knowledge of how these changes shape tea quality remains limited. This review summarizes current knowledge on the tea rhizosphere microbiome under abiotic stress. First, we examine how stress reshapes microbial communities, including their composition, metabolic functions, interaction networks, and the recruitment driven by root exudates. Second, we explore the mechanism of rhizosphere microorganisms affecting tea plants, including participation in nutrient cycling, interaction mediated by exudates, and the regulation of secondary metabolic pathways related to the quality of tea. Finally, we discuss several nutrient-based and microbiome-based management strategies, such as the use of combined fertilizer, intercropping, PGPR, AMF, and SynComs. This review connects stress physiology, rhizosphere ecology, and tea quality regulation within a microbiome-centered framework, providing a basis for strategies that enhance stress tolerance and tea quality stability in the tea plant. Full article

Background: Foods containing essential elements are important to human health. There is concern regarding micronutrient deficiency in the African population, and there is a need to identify foods that can address this public health issue. This study focuses on the determination of essential elements (EEs) in four African food categories: plant-based agricultural products (PBAPs), spices (SPs), fishery products (FPs), and non-food items/additives (NFAs) on sale in the UK market. Methods: Inductively coupled plasma mass spectrometry (ICP-MS) was used for measuring trace essential elements (TEEs—Mn, Fe, Cu, Zn, Se) and major essential elements (MEEs—Na, Mg, K, Ca) in the four categories of the African foods. Results: Mean concentrations (µg/g) for the TEEs were Cu 5.3, 7.3, 23.5, and 7.4; Fe 79.0, 263, 107.7, and 1311.3; Mn 23.4, 28.5, 15.9, and 47.4; Se 0.3, 0.1, 1.6, and 0.6; Zn 8.9, 11.4, 26.8, and 6.2 (PBAPs, SPs, FPs, NFAs, respectively). Mean concentrations of the MEEs (mg/g) were Na 0.6, 11.2, 13.3, and 32.9; Mg 1.6, 1.9, 2.4, and 5.5; K 9.2, 14.6, 9.6, and 8.3; Ca 4.1, 3.3, 27.5, and 127.8. All elements were below the upper intake limits (ULs) established by WHO/EFSA. When expressed as a percentage of the recommended daily allowance (%RDA) for adult males/females, 100% or more of the requirement was achieved for Cu (107.1%) and Ca (112.8%) in FPs. Excess index (EI), hazard quotient (HQ) and hazard index (HI) values for all TEEs were <1, indicating there is no non-cancerogenic health concern across all food categories. Conclusions: These findings demonstrate that African foods available in the UK are substantial sources of essential micronutrients. The fishery products contain high levels of nutrients that are often deficient in African diets. However, before recommending these foods for nutritional interventions, a comprehensive risk–benefit assessment, considering potential toxic metal contamination and microbial hazards must be undertaken. Future studies should expand the sample pool to include a broader range of African foodstuffs and national representation, coupled with integrated risk-benefit analyses. Full article

Rising global temperatures and recurrent heat waves increasingly threaten vegetable production, as vegetable crops are more thermosensitive than most field crops. Vegetable crops frequently experience severe reductions in pollen viability, fruit set, marketable yield, and quality under heat waves. Numerous reviews have substantially advanced our understanding of heat stress perception, signal transduction networks, transcriptional regulation, and thermotolerance mechanisms, primarily in model species and major field crops. However, comprehensive review articles of field-applied mitigation strategies specifically tailored to vegetable production remain limited. This review provides a critical analysis of the use of genetic resources (cultivars and grafting), field management approaches (optimized planting dates, crop rotation, canopy management, and intercropping), irrigation, nutrient optimization, biostimulants, microbial inoculants, and physical microclimate modification strategies. The research consolidates current applied and mechanistic evidence on heat-stress mitigation in vegetable crops and identifies targeted, actionable priorities for field adoption. Emphasis is placed on the integration of complementary mitigation strategies at the field scale where combined approaches may generate synergistic effects. Key research gaps include limited studies on combined heat–drought/salinity stress, lack of standardized field protocols for biostimulants, and insufficient farm-scale economic evaluations of mitigation strategies. Advancing interdisciplinary, field-validated, and climate-smart management frameworks will be essential to ensure sustainable vegetable productivity and quality stability in accelerating global warming. Full article

Global food production systems are increasingly challenged by population growth, climate change, water scarcity, and environmental degradation, necessitating the adoption of sustainable, resource-efficient food production strategies. Aquaponic systems integrate recirculating aquaculture with hydroponic crop cultivation, enabling nutrient recycling and improved water-use efficiency. Simultaneously, CRISPR/Cas9 genome-editing technology has emerged as a powerful tool for precise genetic improvement of economically important aquaculture traits. This review critically evaluates current progress in CRISPR/Cas9 applications in aquaculture, with emphasis on Nile tilapia (Oreochromis niloticus). Evidence from peer-reviewed studies indicates that targeted modification of genes associated with growth regulation, disease resistance, nutrient metabolism, feed efficiency, and stress tolerance can significantly enhance fish productivity and physiological resilience. Genes involved in hypoxia adaptation and nitrogen metabolism may further improve environmental performance in intensive recirculating systems by reducing ammonia accumulation and enhancing nutrient utilization. However, most genome-editing studies have been conducted under laboratory or conventional aquaculture conditions, with limited information available regarding the long-term performance, ecological interactions, microbial dynamics, and biosafety of genome-edited fish in aquaponic environments. Technical limitations including off-target effects, mosaicism, delivery efficiency, regulatory uncertainty, and public acceptance continue to constrain large-scale implementation. In the short term, CRISPR/Cas9 applications are likely to focus on practical trait enhancement under controlled aquaculture systems, whereas longer-term research may explore fish lines specifically optimized for nutrient cycling, environmental resilience, and integrated aquaponic sustainability. Overall, CRISPR/Cas9-mediated genome editing represents a promising but still emerging strategy for improving sustainable aquaculture and aquaponic food production systems. Full article

In resource-poor sandy habitats, alien plant co-invasion often triggers intense belowground competition mediated by rhizosphere microorganisms. However, the mechanisms by which these plants overcome nutrient limitations remain unclear. Here, we conducted an eight-month in situ monitoring of single- and co-invasion plots of Solanum rostratum and Cenchrus pauciflorus Benth. in the Horqin Sandy Land. By integrating soil enzyme assays with 16S rRNA and internal transcribed spacer (ITS) amplicon sequencing, we characterized their rhizosphere microbial community assembly. Co-invasion exposed both species to convergent biotic stress, characterized by the significant enrichment of the pathogenic fungi Didymella and Pseudogymnoascus (linear discriminant analysis (LDA) > 4.0). To mitigate these pressures, the dominant competitor, S. rostratum, specifically recruited a cross-kingdom phosphate-solubilizing consortium comprising Bacillus and Penicillium (LDA > 4.0). This targeted recruitment significantly enhanced rhizosphere activities, increasing phosphatase and sucrase to 86.10 U/g and 2.17 U/g, respectively, thereby maintaining available phosphorus at a high level (35.55 mg/kg). Conversely, the subordinate competitor, C. pauciflorus, lost key native stress-resistant bacteria such as Rubrobacter (relative abundance dropping from 5.39% to 3.27%) and failed to recruit effective microbes, leading to the rapid depletion of available phosphorus (dropping to 21.38 mg/kg). Ultimately, under dual nutrient and pathogenic stress, the precise recruitment and functional integration of cross-kingdom phosphate-solubilizing microbes are strongly linked to the divergent belowground competitive outcomes between these co-invading plants. Full article

Gloiopeltis tenax is a red seaweed containing diverse polysaccharides and bioactive compounds with potential functional applications in animal nutrition. However, information regarding its physiological and microbiome-associated effects in companion animals remains limited. The present study was designed as an exploratory nutritional intervention to evaluate physiological responses associated with dietary G. tenax supplementation in healthy adult dogs using an integrated framework including nutrient digestibility, glycan-degrading enzyme activity, fecal microbiome profiling, and serum metabolomics. Ten healthy adult dogs were assigned to two dietary groups receiving nutritionally balanced diets containing either Ulva sp. (CON) or G. tenax (GT) at 1% inclusion for 16 weeks under standardized feeding and housing conditions. Nutrient digestibility, fecal glycan-degrading enzyme activities, fecal microbiome composition, predicted microbial functional profiles, and serum metabolomic responses were evaluated. No significant differences were observed in nutrient digestibility, fecal score, or general health-related parameters between groups, suggesting acceptable tolerability of dietary G. tenax under the present experimental conditions. Relative abundances of several bacterial taxa differed between groups, and glycan-degrading enzyme activities showed directional changes associated with dietary treatment. PICRUSt2-based analyses suggested potential differences in predicted carbohydrate- and glycan-associated microbial functional tendencies between groups. Serum metabolomic analysis additionally revealed alterations in several amino acid- and carbohydrate-related metabolites associated with dietary intervention. Collectively, these findings provide preliminary insight into microbiome- and metabolome-associated responses to dietary G. tenax supplementation in dogs. Although limited by the exploratory nature and relatively small sample size of the present study, the integrated multi-omics approach applied here may contribute to the development of functional evaluation frameworks for companion animal dietary ingredients. Further studies with larger cohorts and expanded functional analyses are warranted. Full article

The increasing volume of discarded apples generated by commercial grading standards and postharvest losses represents both an environmental burden and an opportunity for sustainable valorization. Despite growing interest in circular economy strategies in the fruit-processing sector, a comprehensive review of the technological, microbiological, and nutritional factors influencing cider production from discarded apples remains limited. To address this gap, this review discusses key aspects of cider production from discarded apples, focusing on raw material characterization, nutrient management, yeast strategies, and fermentation technologies. The physicochemical and microbiological properties of discarded apples are examined, including soluble solids, acidity, phenolic composition, and microbial spoilage risks. Special attention is given to nutrient optimization, particularly yeast assimilable nitrogen (YAN), vitamins, and minerals, as deficiencies may cause sluggish fermentation and adversely affect volatile compound formation and stability. This review evaluates yeast selection, comparing Saccharomyces cerevisiae with non-Saccharomyces yeasts and mixed fermentations, highlighting their effects on chemical composition, aroma, and sensory quality. Innovative approaches such as yeast immobilization and repeated-batch fermentation are reviewed as tools to improve process performance. Key technical challenges, including variability in raw material quality, nutrient supplementation needs, contamination risks, and process scalability, are discussed alongside opportunities for valorization of cider pomace within a circular economy framework. Full article

Preterm birth remains a major global health concern, affecting approximately one in ten neonates, with an estimated 15 million infants born prematurely each year. Prematurity and clinical factors such as antibiotics, cesarean delivery, and limited access to mother’s own milk disrupt microbiota development in VLBW infants; although human milk supplies nutrients and a microbial community, its composition and clinical role are not yet well understood. However, the composition and clinical significance of the human milk microbiota (HMM) in VLBW infants remain insufficiently characterized. Background: This review aims to summarize recent evidence (2021–2025) on the microbiome of MOM in mothers of VLBW (<1500 g) preterm infants and to evaluate its potential role in neonatal health. Methods: The study used a systematic literature review, searching PubMed and Google Scholar with predefined criteria and keywords. Results and Conclusions: MOM microbiota of VLBW in infants is dominated by Staphylococcus, Enterococcus, Streptococcus, Enterobacteriaceae, and Acinetobacter, with lower levels of Veillonella, Clostridium sensu stricto, Pseudomonas, Haemophilus, and Bifidobacterium; its diversity increases over lactation, and feeding type influences infant gut colonization and immune development, though links to necrotising enterocolitis (NEC) remain limited. Further research using multi-omic approaches is needed to clarify these mechanisms and their clinical implications. Full article