Search Results (110)

Ginger is an important spice crop in the north-eastern region of India. Rhizome rot, also called soft rot, is one of the most devastating diseases found in ginger that causes yield losses of up to 100% under favourable conditions. Initially, the disease symptoms appear as a light yellowing of the leaf tips that gradually spreads down to the leaf blade of lower leaves and the leaf sheath along the margin. Under favourable environmental conditions, the disease spreads rapidly, potentially causing significant crop damage. The pathogen can infect at any stage of crop growth, and under favourable environmental conditions, the disease spreads rapidly, failing the crop. Current research emphasises mitigating the losses caused by the devastating disease by using management strategies and biocontrol agents (BCAs). Results revealed that the average highest percent rhizome germination, lowest mean disease incidence, lowest mean disease severity index, lowest coefficient of disease index value, highest rhizome yield and benefit–cost ratio were recorded with Trichoderma harzianum (10 g/kg of rhizomes) + soil application of T. harzianum-enriched well-decomposed farm yard manure (3 kg of T. harzianum mixed with 100 kg FYM at 10–15 days before sowing) + soil drenching with T. harzianum at the rate 10 kg/ha, compared to the untreated control. Furthermore, soil chemical properties such as pH, electrical conductivity, soil organic carbon, total available nitrogen, total available phosphorus, and total available potassium play critical roles in rhizome rot disease severity. BCAs can suppress the phytopathogenic fungi and modulate different functions in plants. Full article

Extensive antibiotic use in swine production contaminates manure and wastewater with antibiotics. Discharging this waste into the environment, even after treatment, potentially fuels the spread of antibiotic resistance. This study investigated a full-scale swine wastewater treatment plant that combines coagulation–sedimentation, sand filtration, ozonation, activated carbon filtration, and a deaeration process. At each stage of this process, samples were collected and analyzed to determine their water quality parameters, antibiotic concentrations, and antibiotic resistance genes (ARGs). The experimental results showed coagulation–sedimentation effectively removed suspended solids (92.2%) and total phosphorus (96.9%). Ozonation significantly reduced antibiotic levels, including sulfamethazine by over 99.9%, although ARGs such as tetM, sul1, and sul2 were only removed at levels up to 95.9%. Interestingly, partial rebounds of sulfamethazine (438.9 μg/L) and marbofloxacin (0.40 μg/L) appeared in the final effluent, suggesting that desorption or operational factors (e.g., hydraulic fluctuation, filter media saturation, and pH) may affect the treatment process. In addition, strong correlations emerged between the levels of suspended solids and those of certain antibiotics (lincomycin, tiamulin), indicating particle-mediated sorption as a key mechanism. Even though ozonation and coagulation–sedimentation were found to contribute to the substantial removal of pollutants, the observed rebounds and residual ARGs highlight the need for optimized operational strategies and multi-barrier approaches to fully mitigate antibiotic contamination and inhibit the proliferation of resistant bacteria in swine wastewater. Full article

Cyperus esculentus is an invasive sedge causing high losses in many crops. Prevention is key in minimizing further spread and damage. Propagules (tubers or seeds) may spread via cattle manure. This study examined the effect of ensiling, digestion, and storage in manure on the viability of C. esculentus propagules. Propagules were subjected to five durations (0–16 weeks) in silage maize, seven durations (0–48 h) of ruminal digestion, and five durations of storage (0–16 weeks) in manure (slurry or farmyard), or combinations of previous processes. Afterwards, the viabilities were determined by a germination and tetrazolium test. After 6 weeks in a maize silo, the viability of the propagules was reduced by at least 96%. Incubation for 36 h in the rumen, followed by post-ruminal digestion in vitro, reduced seed viability by 30%. However, for the tubers, no effect was observed. The viability of seeds and tubers was reduced by 90% after 11.5 and 13.7 weeks of incubation in slurry, respectively. Compared with seeds, tubers were less tolerant to 12–24 h of animal digestion, followed by 8 weeks of storage in slurry. Keeping a maize silo closed for at least 6 weeks and maintaining slurry storage for at least 16 weeks are excellent measures to eliminate C. esculentus. For farmers, these preventive measures are relatively easy and cheap to implement compared to the requirements of curative control methods. Full article

Antimicrobial resistance (AMR) poses a significant threat to human, animal, and public health, particularly in Sub-Saharan Africa (SSA), where the beef sector is vital to food security and livelihoods. We conducted a scoping review to explore the determinants and impacts of AMR within the beef value chain in SSA, highlighting the challenges and progress in mitigating AMR risks in livestock production. This review identifies key factors contributing to AMR, including the overuse and misuse of antimicrobials, inadequate veterinary oversight, and weak regulatory frameworks. These practices are prevalent across various stages of the beef value chain, from farm to slaughterhouse, and are exacerbated by informal markets and insufficient infrastructure. Our findings also highlight the role of environmental factors, such as contamination of feed, water, and manure, in the spread of resistant pathogens. Additionally, gaps in AMR surveillance, education, and enforcement limit effective control measures in the region. While efforts to combat AMR have gained momentum in some countries, including the development of national action plans and surveillance systems, substantial challenges remain. These include poor adherence to antimicrobial guidelines, insufficient veterinary training, and the lack of integration between sectors. There is a need for targeted research to better understand antimicrobial misuse, socio-economic drivers, and the environmental pathways of AMR, as well as the need for stronger regulatory frameworks and cross-border cooperation. Addressing these challenges will be essential to safeguarding food safety, public health, and the sustainability of the beef industry in SSA. Full article

Red mud has been demonstrated to improve the methane production performance of anaerobic digestion (AD). However, the influence of red mud on ammonia nitrogen inhibition during AD through the mediating role of bacteria–phages interactions in this process remains poorly understood. Thus, this study investigated the impact of red mud on nitrogen metabolism in AD and characterized the phage and prokaryotic communities through a metagenomic analysis. The results showed that red mud significantly increased methane production by 23.1% and promoted the conversion of ammonia nitrogen into organic nitrogen, resulting in a 4.8% increase in total nitrogen. Simultaneously, it enriched the key microbial genera Methanothrix, Proteinophilum, and Petrimonas by 0.5%, 0.8%, and 2.7%, respectively, suggesting an enhancement in syntrophic acetate oxidation with greater ammonia tolerance. A viral metagenomic analysis identified seven nitrogen-metabolism-related auxiliary metabolic genes (AMGs), with glnA (encoding glutamine synthetase) being the most abundant. Compared to the control treatments, the red mud treatments led to a higher abundance of temperate phages and an increased number of AMGs. Furthermore, two new hosts carrying glnA (Mycolicibacteria smegmatis and Kitasatopola aureofaciens) were predicted, indicating that red mud expanded the host range of phages and promoted the spread of AMGs. Overall, our findings highlight the importance of phages in alleviating ammonia nitrogen inhibition and provide a novel understanding of the role of red mud in the AD of swine manure. Full article

In agriculture, manuring offers several benefits, which include improving soil fertility, structure, water retention, and aeration; all these factors favor plant health and productivity. However, improper handling and application of manure can pose risks, such as spread of pathogens and water pollution. Mitigation of such risks requires not only proper storage and composting practices, but also compliance with correct application periods and techniques. Spaceborne Earth observation can contribute to mapping manure applications and identifying possible critical situations, yet manure detection from satellite data is still a largely open question. The aim of this research is an automated, machine learning (ML)-based approach to detecting manure application on crop fields in time sequences of spaceborne, multi-source optical Earth Observation data. In the first stage of this research, multispectral data alone was considered; a pool of different spectral indexes were analyzed to identify the ones most impacted by manure application. Increments of the selected indexes from one satellite acquisition to the next were used as features to train and test various machine learning models. Two agricultural areas—one in Spain and one in Italy—were considered. Fair levels of accuracy were achieved when training and testing were carried out in the same geographical context, whereas ML models trained on one context and tested on the other reported significantly lower—albeit still acceptable—accuracy levels. In the stage that followed, thermal data was integrated and used alongside multispectral indexes. This addition led to significant improvements in accuracy levels, despite possible thermal-to-multispectral sampling mismatch in time series. Our results appear to indicate that ML-based approaches to manuring detection from space require training on the targeted geographical context, although transfer learning can probably be leveraged and only fine-tuning training will be needed. Spaceborne thermal data, where available, should be included in the input data pool to improve the quality of the final result. The proposed method is meant as a first step towards a suite of techniques that should enable large-scale, consistent monitoring of agricultural activities to check compliance with environmental regulations and provide enhanced traceability information for food products. Full article

Anaerobic digestion (AD) is a waste-to-energy strategy that leverages natural microbiological processes. It is increasingly used in farms to treat manure, resulting in biogas for energy production and digestate as fertiliser. However, animal manure often contains antibiotic (AB) residues, raising concerns about their impact on AD efficiency and their potential spread through digestate use. This multidisciplinary study evaluated the effects of an AB mixture (enrofloxacin, ciprofloxacin and sulfamethoxazole) on CH₄ production, microbial community (Fungi, Bacteria and Archaea) dynamics and antibiotic resistance gene (ARG) presence. The experiment used a cattle manure/digestate ratio of 1:35, typical of real digesters, with AB concentrations set at low (2.5 mg kg⁻¹ each) and high (7.5 mg kg⁻¹ each) levels. The ABs affected cumulative CH₄ production (ranging from 5939 to 6464 mL) only at the highest concentration. After 51 days, sulfamethoxazole reached residual levels, while enrofloxacin and ciprofloxacin were only partially degraded (<50%), but ARGs were significantly reduced. The microbial community, particularly prokaryotes, exhibited resilience, maintaining efficient CH₄ production. Overall findings strongly suggest that AD is an effective treatment for producing energy and good fertiliser, also reducing AB and ARG content as well as mitigating CH₄ emissions into the atmosphere. Full article

Agroecology is increasingly used to study the evolution of farms and food systems, in which livestock plays a significant part. While large-scale specialized livestock farms are sometimes criticized for their contribution to climate change and nutrient cycle disruption, interest in alternative practices such as raising multiple species, integrating crop and livestock, relying on pasture, and marketing through short supply chains is growing. Through a narrative review, we aimed to determine if the scientific literature allowed for an evaluation of the agroecological contribution of alternative livestock farming practices. Taking advantage of ruminants’ capacity to digest human-inedible plant material such as hay and pasture on marginal land reduces the competition between livestock feed and human food for arable land. Taking advantage of monogastric animals’ capacity to digest food waste or byproducts limits the need for grain feed. Pasturing spreads manure directly on the field and allows for the expression of natural animal behavior. Animals raised on alternative livestock farms, however, grow slower and live longer than those raised on large specialized farms. This causes them to consume more feed and to emit more greenhouse gases per unit of meat produced. Direct or short supply chain marketing fosters geographical and relational proximity, but alternative livestock farms’ contribution to the social equity and responsibility principles of agroecology are not well documented. Policy aimed at promoting practices currently in place on alternative livestock farms is compatible with agroecology but has to be envisioned in parallel with a reduction in animal consumption in order to balance nutrient and carbon cycles. Full article

The impact of antibiotic therapy on the spread of antibiotic resistance genes (ARGs) and its relationship to gut microbiota remains unclear. This study investigated changes in ARGs, mobile genetic elements (MGEs), and gut microbial composition following tilmicosin administration in pigs. Thirty pigs were randomly divided into control (CK), low-concentration (0.2 g/kg; L), and high-concentration (0.4 g/kg; H) groups. Tilmicosin concentration in manure peaked on day 16 of dosing and dropped below detectable levels by day 13 of the withdrawal period. While tilmicosin did not significantly affect the total abundance of macrolide resistance genes (MRGs) (p > 0.05), it significantly increased the abundance of the multidrug resistance gene tolC in the H group compared with the L and CK groups during the withdrawal period (p < 0.05). This increase was associated with a coincidental rise in the abundance of MGEs (e.g., int1 and int2) and the growth of potential tolC-hosting bacteria such as Paenalcaligenes and Proteiniclasticum. Redundancy analysis showed gut microbial composition as the primary driver of MRG abundance, with MGEs, tilmicosin concentration, and manure physicochemical properties playing secondary roles. These findings suggest that high-dose tilmicosin may alter the gut microbiota and promote ARG spread via MGE-mediated transfer. Full article

This study investigated the basement aquifer beneath the urbanised city of Niamey and the agricultural fields of Kollo, SW of Niger. During the observation period spanning from 2021 to 2023, groundwater and surface water samples were collected for analysis of major ions and the stable isotopes oxygen-18 and deuterium (δ¹⁸O and δ²H) of water. To trace the origin of high nitrate concentrations (NO₃⁻) found in several observation and drinking water wells in both areas, δ¹⁵N and δ¹⁸O isotope values of NO₃⁻ were analysed in groundwater and eluted soil samples. The observed hydrochemical patterns mainly reflect the heterogeneity of the weathered fringe of the basement aquifer. Decreasing concentrations of NO₃⁻ and δ¹⁸O and δ²H values were observed in relation to the distance of the Niger River and increasing thickness of the clay layer on the surface. The wells close to the river in Niamey show a dilution effect during the flood season, and the NO₃⁻ concentrations displayed a continuous increasing trend. The δ¹⁵N-NO₃ and δ¹⁸O-NO₃ values confirmed that septic tank water is spreading in the region of Niamey and that manure originating from livestock in Kollo is the main source of NO₃⁻. The patterns of δ¹⁵N in the soil samples coincide with those of cattle’s manure spread in both areas. The shallow wells show significantly higher values of electric conductivity and NO₃⁻ concentrations compared to the deeper wells, which clearly indicates the influence of shallow septic tanks on water quality. Full article

The abundance and diversity of antimicrobial-resistant bacteria (ARB) and antimicrobial resistance genes (ARGs) in agricultural landscapes may be important for the spread of antimicrobial resistance (AMR) in the environment. The aim of this study was to apply screening methods for ARB and ARGs to investigate the impact of farming on the prevalence of AMR in a country with low antibiotic usage. We have analyzed samples (n = 644) from soil and wild terrestrial animals and plants (slugs, snails, mice, shrews, earthworms, and red clover) collected over two years in agricultural fields accompanied by nearby control areas with low human activity. All samples were investigated for the occurrence of 35 different ARGs using high-throughput quantitative PCR (HT-qPCR) on a newly developed DNA array. In addition, samples from the first year (n = 415) were investigated with a culture-based approach combined with whole-genome sequencing (WGS) to identify antimicrobial-resistant E. coli (AREC). ARGs were detected in 59.5% of all samples (2019 + 2020). AREC, which was only investigated in the 2019 samples, was identified in 1.9% of these. Samples collected in the autumn showed more ARGs and AREC than spring samples, and this was more pronounced for organic fields than for conventional fields. Control areas with low human activity showed lower levels of ARGs and a lack of AREC. The use of livestock manure was correlated with a higher level of ARG load than other farming practices. None of the soil samples contained antibiotics, and no association was found between AMR and the levels of metals or pesticides. High qualitative similarity between HT-qPCR and WGS, together with the positive controls to the validation of our 35 ARG assays, show that the microfluid DNA array may be an efficient screening tool on environmental samples. In conclusion, even in a country with a very low consumption of antimicrobials by production animals, our results support the hypothesis of these animals being a source of AREC and ARGs in agricultural environments, primarily through the use of manure. Full article

Long-term excessive use of fertilizers and intensive cultivation not only decreases soil organic carbon (SOC) and productivity, but also increases greenhouse gas emissions, which is detrimental to sustainable agricultural development. The purpose of this paper is to identify organic amendments suitable for winter wheat growth in the North China Plain by studying the effects of organic amendments on the economic benefits, carbon emissions, and carbon sequestration for winter wheat fields and to provide a theoretical basis for the wide application of organic amendments in agricultural fields. The two nitrogen rates were N0 (0 kg ha⁻¹) and N240 (240 kg ha⁻¹), and the four organic amendments were straw, manure, mushroom residue (M R), and biochar. The results showed that, compared to N0, N240 significantly increased the yield by 244.1–318.4% and the organic carbon storage by 16.7–30.5%, respectively, but increased the carbon emissions by 29.3–45.5%. In addition, soil carbon stocks increased with all three types of organic amendments compared to the straw amendment, with the biochar treatment being the largest, increasing carbon storage by 13.3–33.6%. In terms of yield and economic benefits, compared to the straw amendment, the manure and biochar amendments increased winter wheat yields by 0.0–1.5% and 4.0–13.3%, respectively, and M R slightly decreased wheat yield; only the economic benefit of the M R amendment was greater than that of the straw amendment, with an increase in economic benefit of 1.3% and 8.2% in the 2021–2022 and 2022–2023 seasons, respectively. Furthermore, according to the net ecosystem productivity (NEP), N0 was the source of CO₂, while N240 was a sink of CO₂. The TOPSIS results showed that N240 with a mushroom residue amendment could be recommended for increasing soil carbon stocks and economic benefits for winter wheat in the NCP and similar regions. Low-cost M R can increase farmer motivation and improve soil organic carbon, making a big step forward in the spread of organic materials on farmland. Full article

Satellite remote sensing is currently an established, effective, and constantly used tool and methodology for monitoring agriculture and fertilisation. At the same time, in recent years, the need for the detection of livestock manure and digestate spreading on the soil is emerging, and the development of spectral indices and classification processes based on satellite multispectral data acquisitions is growing. However, the application of such indicators is still underutilised and, given the polluting impact of livestock manure and digestate on soil, groundwater, and air, an in-depth study is needed to improve the monitoring of this practice. Additionally, this paper aims at exposing a new spectral index capable of detecting the land affected by livestock manure and digestate spreading. This indicator was created by studying the spectral response of bare soil and livestock manure and digestate, using Copernicus Sentinel-2 MSI satellite acquisitions and ancillary datasets (e.g., soil moisture, precipitation, regional thematic maps). In particular, time series of multispectral satellite acquisitions and ancillary data were analysed, covering a survey period of 13 months between February 2022 and February 2023. As no previous indications on fertilisation practices are available, the proposed approach consists of investigating a broad-spectrum area, without investigations of specific test sites. A large area of approximately 236,344 hectares covering three provinces of the Emilia-Romagna Region (Italy) was therefore examined. A series of ground truth points were also collected for assessing accuracy by filling in the confusion matrix. Based on the definition of the spectral index, a value of the latter greater than three provides the most conservative threshold for detecting livestock manure and digestate spreading with an accuracy of 62.53%. Such results are robust to variations in the spectral response of the soil. On the basis of these very encouraging results, it is considered plausible that the proposed index could improve the techniques for detecting the spreading of livestock manure and digestate on bare ground, classifying the areas themselves with a notable saving of energy compared to the current investigation methodologies directly on the ground. Full article

The global increase in antibiotics consumption has caused hazardous concentrations of these antimicrobials to be present in soils, mainly due to the spreading of sewage sludge (or manure or slurry) and wastewater, and they could enter the food chain, posing serious risks to the environment and human health. One of these substances of concern is cefuroxime (CFX). To face antibiotics-related environmental pollution, adsorption is one of the most widely used techniques, with cost-effective and environmentally friendly byproducts being of clear interest to retain pollutants and increase the adsorption capacity of soils. In light of this, in this work, three low-cost bioadsorbents (pine bark, oak ash, and mussel shell) were added to different soil samples (at doses of 12 and 48 t/ha) to study their effects on the adsorption of CFX. Specifically, batch experiments were carried out for mixtures of soils and bioadsorbents, adding a range of different antibiotic concentrations at a fixed ionic strength. The results showed that the addition of pine bark (with pH = 3.99) increased the adsorption to 100% in most cases, while oak ash (pH = 11.31) and mussel shell (pH = 9.39) caused a clearly lower increase in adsorption (which, in some cases, even decreased). The Freundlich and linear models showed rather good adjustment to the experimental data when the bioadsorbents were added at both doses, while the Langmuir model showed error values which were too high in many cases. Regarding desorption, it was lower than 6% for the soils without bioadsorbents, and there was no desorption when the soils received bioadsorbent amendments. These results show that the addition of appropriate low-cost bioadsorbents to soils can be effective for adsorbing CFX, helping in the prevention of environmental pollution due to this emerging contaminant, which is a result of clear relevance to environmental and human health. Full article