Search Results (135)

Salt stress severely restricts grape (Vitis vinifera L.) production. Serine/arginine-rich (SR) proteins, as a class of RNA-binding proteins, play important roles in plant growth, development and stress responses. However, the function and regulatory mechanism of VvSR34a in grape salt tolerance remain unclear. In this study, grape callus and cutting seedlings were used as materials to explore the role and molecular mechanism of VvSR34a in grape salt stress response. The results showed that, under 100 mM NaCl treatment, the relative level of VvSR34a in grape callus exhibited a ‘first increase and then decrease’ pattern, reaching a peak at 2 h, and the gene was localized in the nucleus. Transgenic experiments confirmed that the overexpression of VvSR34a significantly enhanced salt tolerance in grape callus and cuttings, as evidenced by better growth status, higher chlorophyll content and root activity, as well as lower electrolyte leakage and malondialdehyde (MDA) content under salt stress. In contrast, the silencing of VvSR34a significantly increased salt sensitivity in grapes. Y2H and LCI assays verified that VvSR34a physically interacts with VvCOP9. VvCOP9 may play a negative regulatory role in the salt stress response of the grapevine, and through the loss of the high salt-tolerant phenotype in the VvSR34a/VvCOP9-RNAi lines, it demonstrated that VvCOP9 is genetically upstream of VvSR34a. Furthermore, the ubiquitination and degradation assay demonstrated that VvCOP9 can significantly promote the degradation of VvSR34a. RNA-seq analysis showed that a total of 2834 differentially expressed genes and 202 alternative splicing events were detected in VvSR34a overexpression lines. These differentially expressed genes were significantly enriched in ATPase activity, redox and hormone signaling pathways. This study demonstrates that VvSR34a positively regulates salt tolerance in grapes, providing an important theoretical basis for molecular breeding of salt-tolerant grapevines. Full article

Strawberry is an economically important horticultural crop cultivated worldwide. However, its growth, yield, and fruit quality are severely constrained by abiotic stresses, such as salinity, drought, and low temperature, as well as biotic stresses including pathogen attack and pest infestation. WRKY transcription factors (TFs) have been extensively characterized in model plants such as Arabidopsis and rice, and increasing evidence highlights their functional diversification and regulatory importance in horticultural crops, including tomato and grapevine. In this review, we summarize recent advances in understanding the roles of WRKY TFs in strawberry responses to both biotic and abiotic stresses, based on studies in both the diploid woodland strawberry (Fragaria vesca L.) and the octoploid cultivated strawberry (Fragaria × ananassa Duchesne). We discuss their involvement in hormone crosstalk, redox regulation, and transcriptional control within complex stress-response networks, while distinguishing expression-based associations from experimentally validated regulatory functions. To provide a clear framework for evaluating the current evidence, we categorize the findings according to a hierarchy of experimental validation, ranging from direct functional characterization in strawberry, to transient assays, heterologous systems (e.g., Arabidopsis or tobacco), transcriptomic inferences, and predictions based on sequence homology. Finally, we outline potential future directions for exploiting strawberry WRKY TFs as candidate regulators in molecular breeding, thereby providing a theoretical basis for future functional studies and breeding applications. Full article

The coloration of vegetative organs in grapevine (Vitis vinifera L.) is an important phenotypic trait associated with environmental responsiveness and stress adaptation; however, its genetic regulatory mechanisms remain poorly understood. To systematically elucidate the genetic basis of vegetative coloration, a genome-wide association study (GWAS) was performed using 151 grapevine accessions, integrating high-depth whole-genome resequencing data with phenotypic evaluations of eight coloration traits across two consecutive years (2023–2024). Using a mixed linear model (MLM), 13 stable and significant SNP loci were identified on chromosomes 3, 5, 6, 13, 14, 15, 16, and 18, explaining 13.28–19.35% of the phenotypic variation. Within ±15 kb of these loci, 16 candidate genes were identified. qRT-PCR analysis of key candidates revealed that VIT_06s0004g03620 (mitogen-activated protein kinase), VIT_16s0039g01900 (MYB-like domain-containing protein), and VIT_14s0083g01050 (MADS-box protein 2) showed significant positive correlations between expression levels and coloration intensity, with distinct expression patterns among accessions exhibiting different coloration grades. These genes are likely involved in the regulation of anthocyanin accumulation. Collectively, this study elucidates the genomic architecture underlying vegetative organ coloration in grapevine and provides valuable candidate genes and SNP markers for functional validation and molecular-assisted breeding. Full article

Background: The global transcriptome reprogramming in grapevines in response to powdery mildew remains poorly understood, despite its economic implications, especially the new cultivars. Methods: Thus, this study aimed to elucidate these changes through RNA sequencing in ‘Yeniang No. 2’ grapevine leaves infected with powdery mildew compared to healthy ones. Results: A total of six samples were subjected to transcriptome sequencing, resulting in 36.85 Gb of clean data. A minimum of 5.89 Gb of clean data was generated for each sample, with at least 92.24% of the clean data attaining a quality score of Q30. Clean reads from each sample were aligned to the designated reference genome. The mapping ratio varied between 88.77% and 89.66%. The high-quality sequencing data revealed 1219 differentially expressed genes (DEGs), of which the infection upregulated 790 and downregulated 429. Functional enrichment analyses revealed a significant activation of key defense-related pathways. These included plant–pathogen interaction, phenylpropanoid and flavonoid biosynthesis for creating antimicrobial compounds, glutathione metabolism for reducing oxidative stress, and oxidative phosphorylation for enhanced energy production. This indicates a coordinated, multi-faceted defense strategy. The study also uncovered a complex layer of post-transcriptional regulation, identifying 1883 novel genes and 22,210 alternative splicing events, primarily skipped exons and intron retention. Key hub proteins identified within interaction networks, along with these splicing changes, underscore a sophisticated defense involving transcriptional reprogramming and metabolic shifts. Conclusions: The genes and molecular markers discovered are valuable resources for marker-assisted breeding. Leveraging these findings, particularly hub genes and favorable splice variants, can accelerate the development of new grapevine cultivars with durable resistance to powdery mildew. Full article

Vitis amurensis is a cold-hardy wild grape species and represents valuable germplasm for breeding cold-tolerant grapevines. In this study, we identified a highly expressed gene (VaTPS9) in one-year-old shoots of V. amurensis ‘Shuangfeng’ during overwintering, but its biological function remained unclear. Temporal and spatial expression analyses revealed distinct expression patterns of VaTPS9 among different tissues from June to November, with the highest transcript abundance detected in one-year-old shoots in November. Gene cloning and sequence alignment showed that VaTPS9 encoded a type II trehalose-6-phosphate synthase (TPS) and was designated as VaTPS9. Functional analyses demonstrated that overexpression of VaTPS9 enhanced cold tolerance in yeast, Arabidopsis thaliana, and V. amurensis callus tissues. Conversely, virus-induced gene silencing (VIGS) of VaTPS9 in grapevine plantlets markedly increased cold sensitivity under low-temperature stress. These reciprocal gain- and loss-of-function phenotypes indicate that VaTPS9 positively regulates cold tolerance, likely by modulating trehalose metabolism and associated physiological responses, including reactive oxygen species (ROS) homeostasis. Collectively, our findings provide new insights into the molecular basis of cold adaptation in wild grape species and highlight VaTPS9 as a promising candidate gene for improving cold tolerance in cultivated grapevine. Full article

Grapevine tissues (Vitis spp.) are rich in various phenolic compounds and polysaccharides, which complicates the isolation of dsDNA for molecular analysis. In this study, 25 different DNA extraction buffers were developed and tested using a six-factor matrix method with five levels of variation. An optimized buffer based on 100 mM Tris-HCl (pH 8.0) was developed, containing 1% (m/v) CTAB, 1% (m/v) PVP, 5% (v/v) β-mercaptoethanol, 30 mM Na₂EDTA, 1.0 M NaCl, and 60 min of incubation. The protocol allowed us to obtain high-quality DNA (187–305 ng/µL, OD260/OD280 = 1.80–1.88) suitable for PCR from five grape varieties: ‘Chardonnay’, ‘Kober 5BB’, ‘Shine Muscat’, ‘Selection Oppenheim 4’, and ‘Fercal’, grown in vitro. This universal buffer improves the reproducibility of results in studies of genetic diversity, pathogen detection, and breeding. Full article

Salt stress is a major abiotic factor limiting grapevine growth and yield. To elucidate the physiological and molecular regulatory mechanisms underlying salt tolerance in grapevine, this study used ‘Carménère’ (Vitis vinifera) and ‘Pinot Noir’ (Vitis vinifera) as experimental materials. Under 200 mmol/L NaCl stress, the physiological response characteristics of the two cultivars were systematically compared, and transcriptome sequencing combined with qRT-PCR analysis was conducted to explore the molecular basis of their differences in salt tolerance. The results showed that salt stress significantly impaired photosynthetic performance and disrupted cellular homeostasis in grapevine; however, the reductions in relative chlorophyll content (SPAD value), maximum photochemical efficiency of photosystem II (Fv/Fm), and photosynthetic performance were significantly smaller in ‘Carménère’ than in ‘Pinot Noir’, indicating greater stability of the photosynthetic apparatus in ‘Carménère’. Meanwhile, ‘Carménère’ maintained higher activities of antioxidant enzymes and higher levels of non-enzymatic antioxidants, effectively reducing reactive oxygen species accumulation and membrane lipid peroxidation. In addition, under salt stress, ‘Carménère’ accumulated greater amounts of osmotic adjustment substances and maintained lower Na⁺ content and higher K⁺ content, demonstrating a more efficient capacity for osmotic regulation and ion homeostasis. Transcriptomic analysis revealed that the plant hormone signal transduction, MAPK signaling, and glutathione metabolism pathways were significantly enriched in ‘Carménère’, with multiple key genes being coordinately upregulated under salt stress. Taken together, these findings indicate that ‘Carménère’ achieves enhanced salt tolerance through a multilayered signaling regulatory network that coordinates physiological defense responses. This study provides a theoretical basis for elucidating the mechanisms of salt tolerance in grapevine and for the molecular breeding of salt-tolerant cultivars. Full article

Climate change introduces a critical threat to global viticulture, compromising grape yield, quality, and the long-term sustainability of Vitis vinifera cultivation. Addressing these challenges requires innovative strategies to enhance grapevine resilience. The integration of multi-omics data, predictive breeding, and physiological insights into ripening and stress responses is refining our understanding of grapevine adaptation mechanisms. In parallel, recent advances in plant biotechnology have accelerated progress from marker-assisted and genomic selection to targeted genome editing, with CRISPR/Cas systems and other New Genomic Techniques (NGTs) offering advanced precision tools for sustainable improvement. This review synthesizes the major achievements in grapevine genetic improvement over time, tracing the evolution of strategies from traditional breeding to modern genome editing technologies. Overall, we highlight how combining genetics, biotechnology, and physiology is reshaping grapevine breeding towards more sustainable viticulture. The convergence of these disciplines establishes a new integrated framework for developing resilient, climate-adapted grapevines that maintain yield and quality while preserving varietal identity in the face of environmental change. Full article

‘Candidatus Phytoplasma solani’ of the 16SrXII group is an emerging vector-borne pathogen in European crop production. The cixiid planthopper Hyalesthes obsoletus transmits 16SrXII-A stolbur phytoplasmas that are associated with diseases in grapevine, potato, and various weeds. While 16SrXII-P genomes transmitted by Pentastiridius leporinus are available, no genome of an H. obsoletus-transmissible 16SrXII-A phytoplasma has been reported from Germany. Here, we present insights into the phylogenetic position and pathogen–host interactions through the functional reconstruction of the complete 832,614 bp genome of the H. obsoletus transmissible ‘Ca. P. solani’ 16SrXII-A strain POT from a potato field. Phylogenetic analyses highlight the heterogeneity within the stolbur group using whole-genome alignment and a BUSCO-based core gene analysis approach. The POT chromosome shares highest average nucleotide identity with Italian bindweed-associated genomes and displays strong synteny with the c5 strain. Consistent with the typical phytoplasma architecture, the POT genome combines mobile-element-driven instability with a conserved core metabolism. Virulence factors include transposon-linked effectors but lack pathogenicity island organisation. POT further differs from other 16SrXII-group phytoplasmas through unique collagen-like proteins that could contribute to virulence. These findings provide a robust genomic framework that improves diagnostics, enables strain-level resolution and supports the assessment of breeding materials under stolbur phytoplasma pressure, thereby refining our understanding of stolbur phytoplasma diversity and highlighting the evolutionary divergence within the 16SrXII subgroup. Full article

Circular RNAs (circRNAs) are covalently closed RNA molecules that regulate various biological processes in plants. However, the functions of most identified circRNAs remain unclear. Here, we report a nucleoplasmic-localized circRNA, Vv-circRCD1, derived from exons 2 and 3 of the grape VvRCD1 gene. Overexpression of Vv-circRCD1 significantly shortened primary root length and increased root hair number and length, notably, and improved the salt tolerance in Arabidopsis. Transient overexpression also significantly enhanced salt tolerance of grapevines. In silico analyses confirmed direct sequence complementarity between Vv-circRCD1 and the Vvi-miR399 family, and Vv-circRCD1 and Vvi-miR399 target genes (involved in salt stress responses) showed consistent expression patterns under salt stress, indicating a Vv-circRCD1–Vvi-miR399–target gene regulatory module may mediate salt tolerance. These results not only identified Vv-circRCD1 as a novel regulator of grapevine salt tolerance, but also highlighted its potential in improving crop stress resistance, providing a practical reference for crop breeding. Full article

Grapevines face the dual challenge of sustaining yield and fruit quality under arid and increasingly variable environmental conditions. This study characterized the phenotypic variability and multi-year stability of 49 grapevine (Vitis spp.) accessions conserved in the Chincha germplasm bank over three consecutive growing seasons, with the aim of identifying promising material for table grape, pisco (a traditional grape-based distilled spirit from Peru), and wine production. Morphological traits (cluster weight, berry weight and dimensions), colorimetric parameters (CIELAB), and physicochemical attributes (moisture, dry matter, soluble solids, pH, titratable acidity, maturity index, and reducing sugars) were evaluated. Multivariate analyses (PCA, hierarchical clustering), genotype × environment interaction models (AMMI and GGE), stability indices (ASV and WAASBY), and assessments of interannual stability were applied, together with a multi-criteria selection index tailored to the intended end use. The results revealed two contrasting phenotypic profiles: one characterized by high berry volume/weight and elevated water content and another with smaller berries but higher dry matter, sugars, balanced acidity, and superior maturity indices. Genotypic effects were predominant for size-related traits such as berry weight, whereas titratable acidity and reducing sugars exhibited a more pronounced genotype × year interaction, supporting the use of AMMI models and the WAASBY index to select genotypes that are both productive and stable. The ranking identified accessions PER1002061, PER1002062, and PER1002168 as outstanding candidates for table grape production; PER1002076, PER1002097, and PER1002156 for pisco; and PER1002122, PER1002131, PER1002135, and PER1002098 as accessions with high oenological potential. Overall, these findings highlight the value and diversity of Peruvian grapevine germplasm and provide a foundation for breeding programs targeting varieties adapted to specific market niches, including table grape, wine, and pisco. Full article

Traditional methods for grapevine (Vitis spp.) breeding are marked by lengthy breeding cycles with usually low efficiency, rendering them inadequate for the demands of the rapidly evolving grapevine industry. While grapevine genetic transformation holds significant potential for improvement, its application is hampered by bottlenecks in efficiency, speed, and genotype dependence. In this context, this review systematically examines the factors influencing and challenges associated with key steps in grapevine genetic transformation—specifically, gene delivery and plant regeneration. It posits that the development and application of marker genes, the exploration and utilization of developmental regulators, and the establishment of novel genetic transformation systems are effective strategies to overcome current limitations. In this paper, we present a foundation and methodological guidance for creating efficient and stable genetic transformation systems for grapevine, with significant theoretical and practical implications. Full article

Background: Grapevine breeding increasingly relies on molecular tools to introduce durable resistance to downy and powdery mildew. However, the reproducibility of simple sequence repeat (SSR) markers across platforms remains a challenge for marker-assisted selection (MAS). This study aimed to evaluate the performance of SSR markers associated with key resistance loci (Run1/Rpv1, Ren3/Ren9, Rpv3, Rpv10, Rpv12) using the Qsep100 system and to validate selected markers on the ABI platform. Methods: A panel of grapevine cultivars and breeding genotypes was analyzed for SSR markers linked to resistance loci. PCR amplicons were separated on the Qsep100 BioFragment Analyzer, and a subset of markers was cross-validated using ABI capillary electrophoresis. Results: Only a limited subset of markers displayed consistent performance across genotypes. Sc34-8 and Sc35-2 were most reliable for Run1/Rpv1, Indel-27 and Indel-20 for Ren3/Ren9, UDV737 for all Rpv3 sub-loci, GF-09-44 and GF-09-57 for Rpv10, and UDV340 and UDV343 for Rpv12. ABI validation of UDV737 and Indel-27 confirmed high concordance with Qsep100 results, with allele size differences typically ≤2 bp. Conclusions: The study identifies a core set of robust SSR markers suitable for routine MAS in grapevine breeding. Results demonstrate that the Qsep100 system is a reliable alternative to ABI for large-scale genotyping, supporting its broader implementation in resistance breeding programs. Full article

Salinity is a long-standing global environmental stressor of terrestrial agroecosystems, with important implications for viticulture sustainability, especially in arid and semi-arid environments. Salt-induced physiological and biochemical disruptions to grapevines undermine yield and long-term vineyard sustainability. This review aims to integrate physiological, molecular, and omics-based insights to elucidate how grapevine rootstocks confer salinity tolerance and to identify future breeding directions for sustainable viticulture. This review critically assesses the ecological and molecular processes underlying salt stress adaptation in grapevine (Vitis spp.) rootstocks, with an emphasis on their contribution to modulating scion performance under saline conditions. Core adaptive mechanisms include morphological plasticity, ion compartmentalization, hormonal regulation, antioxidant defense, and activation of responsive genes to stress. Particular emphasis is given to recent integrative biotechnological developments—including transcriptomics, proteomics, metabolomics, and genomics—that reveal the intricate signaling and regulatory networks enabling rootstock-mediated tolerance. By integrating advances across eco-physiological, agronomic, and molecular realms, this review identifies rootstock selection as a promising strategy for bolstering resilience in grapevine production systems confronted by salinization, a phenomenon increasingly exacerbated by anthropogenic land use and climate change. The research highlights the value of stress ecology and adaptive root system strategies for alleviating the environmental consequences of soil salinity for perennial crop systems. Full article

The growing demand for sustainable, health-promoting foods has intensified efforts to improve the antioxidant potential of berry crops through integrative agronomic, genomic, and breeding innovations. Berries are rich dietary sources of bioactive compounds that support human health and provide benefits far beyond basic nutrition. This review explores the diversity of major berry crops, including blueberries, raspberries, cranberries, blackberries, and grapes, with emphasis on their nutritional value and antioxidant profiles. It also examines their domestication history, wild relatives, and commercial cultivars, offering insight into the genetic and phenotypic diversity underlying their rich chemical composition. Furthermore, the review highlights the application of modern tools to enhance antioxidant content. By integrating agronomic practices such as seed priming and grafting, advanced molecular breeding technologies, including multi-omics, genome-wide association studies (GWAS), and genome editing, breeders and researchers can accelerate the development of high-value berry cultivars that combine superior nutritional quality, resilience to environmental stress, and sustainable productivity under the challenges posed by climate change. Full article