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19 pages, 1578 KiB  
Article
Decreased Nitrogen and Carbohydrate Metabolism Activity Leads to Grain Yield Reduction in Qingke Under Continuous Cropping
by Zhiqi Ma, Chaochao He, Jianxin Tan, Tao Jin and Shuijin Hua
Plants 2025, 14(14), 2235; https://doi.org/10.3390/plants14142235 - 19 Jul 2025
Viewed by 239
Abstract
Qingke (Hordeum vulgare L. var. nudum Hook. f.), a staple crop in the Tibetan Plateau, suffers from severe yield reduction under continuous cropping (by 38.67%), yet the underlying mechanisms remain unclear. This study systematically investigated the effects of 23-year continuous cropping (23y-CC) [...] Read more.
Qingke (Hordeum vulgare L. var. nudum Hook. f.), a staple crop in the Tibetan Plateau, suffers from severe yield reduction under continuous cropping (by 38.67%), yet the underlying mechanisms remain unclear. This study systematically investigated the effects of 23-year continuous cropping (23y-CC) on the nutrient dynamics, carbohydrate metabolism, and enzymatic activities in Qingke leaves across five developmental stages (T1: seedling; T2: tillering; T3: jointing; T4: flowering; T5: filling). Compared to the control (first-year planting), 23y-CC significantly reduced leaf nitrogen (N), phosphorus (P), and potassium (K) contents by 60.94%, 47.96%, and 60.82%, respectively, at early growth stages. Key nitrogen-metabolizing enzymes, including glutamate synthase (GOGAT), glutamine synthase (GS), and nitrate reductase (NR), exhibited reduced activities under 23y-CC, indicating impaired nitrogen assimilation. Carbohydrate profiling revealed lower starch and glucose contents but higher sucrose accumulation in later stages (T4–T5) under 23y-CC, accompanied by the dysregulation of sucrose synthase (SS) and invertase activities. These findings elucidate how continuous cropping disrupts nutrient homeostasis and carbon allocation, ultimately compromising Qingke productivity. This study provides novel insights into agronomic strategies for mitigating continuous cropping obstacles in Qingke. Full article
(This article belongs to the Special Issue Influence of Management Practices on Plant Growth)
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22 pages, 3936 KiB  
Article
Impacts of 360 mg/kg Niacinamide Supplementation in Low-Protein Diets on Energy and Nitrogen Metabolism and Intestinal Microbiota in Growing–Finishing Pigs
by Xiaoyi Long, Haiyang Wei, Zhenyang Wang, Zhiru Tang, Yetong Xu, Xie Peng, Zhihong Sun and Liuting Wu
Animals 2025, 15(14), 2088; https://doi.org/10.3390/ani15142088 - 15 Jul 2025
Viewed by 365
Abstract
This study aimed to investigate the effects of adding 360 mg/kg niacinamide (NAM) to diets on nutrient metabolism, providing insights into how dietary NAM supplementation enhances nitrogen utilization and growth performance in pigs. Forty growing–finishing pigs were randomly assigned to one of four [...] Read more.
This study aimed to investigate the effects of adding 360 mg/kg niacinamide (NAM) to diets on nutrient metabolism, providing insights into how dietary NAM supplementation enhances nitrogen utilization and growth performance in pigs. Forty growing–finishing pigs were randomly assigned to one of four experimental diets as follows: basal diet + 30 mg/kg NAM (CON), basal diet + 360 mg/kg NAM (CON + NAM), low-protein diet + 30 mg/kg NAM (LP), and low-protein diet + 360 mg/kg NAM (LP + NAM). Results showed that supplementation of both the CON and LP diets with 360 mg/kg NAM resulted in decreased urea nitrogen concentrations and carbamyl phosphate synthetase-I activity (p < 0.05). The pyruvate dehydrogenase activity in the serum and liver, as well as the activity of pyruvate dehydrogenase, citrate synthase, and glutamate dehydrogenase 1 in the ileum mucosa, was increased by supplementing the LP diet with 360 mg/kg NAM (p < 0.05). The LP diet with 360 mg/kg NAM increased the villi length to crypt depth, mRNA expression of glucose transporters 1 and 2 and alanine-serine-cysteine transporter 1, and mRNA expression of mechanistic target of the rapamycin 1 in the ileum (p < 0.05). Additionally, 360 mg/kg NAM supplementation in the LP diet reduced ileal Lactobacillus abundance (LDA > 4) and increased ileal microbial nucleotide and purine metabolism (p < 0.05). Our findings suggest that addition of 360 mg/kg NAM to the LP diet reduced urea production in the liver, enhanced glucose and amino acid absorption and transport in the ileum, and improved glucose metabolism. Full article
(This article belongs to the Special Issue Impact of Genetics and Feeding on Growth Performance of Pigs)
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19 pages, 1514 KiB  
Review
Glutamate and Its Role in the Metabolism of Plants and Animals
by Maria Stolarz and Agnieszka Hanaka
Processes 2025, 13(7), 2084; https://doi.org/10.3390/pr13072084 - 1 Jul 2025
Viewed by 451
Abstract
Glutamate is one of the major naturally occurring non-essential amino acids. The aim of this review is to provide a comprehensive analysis of the role of glutamate as a key metabolite in the metabolism of plant and animal organisms. Its role in nutrition [...] Read more.
Glutamate is one of the major naturally occurring non-essential amino acids. The aim of this review is to provide a comprehensive analysis of the role of glutamate as a key metabolite in the metabolism of plant and animal organisms. Its role in nutrition and neurotransmission has intrigued researchers for many years. In both plants and animals, glutamate primarily exists in a monoanionic form characterised by unique physical and chemical properties. In plants, it is involved in the glutamine synthetase/glutamate synthase (GS/GOGAT) cycle, while in animals, it plays a role in the glutamine/glutamate cycle, which is closely related to the urea cycle. Glutamate is also closely linked to the Krebs cycle in both groups of organisms through α-ketoglutarate. Glutamate is essential in both biosynthetic and catabolic pathways and participates in numerous physiological processes in plants and animals. Animals acquire glutamate from food, while plants acquire it from the soil; however, both also synthesise it de novo. Once present in the body, it is transported across cell membranes by specific transporters driven by ionic gradients (a mechanism known as secondary active transport). It is involved in cellular and systemic signalling pathways by interacting with ionotropic and metabotropic receptors. Additionally, glutamate is an important ‘building block’ of many proteins, including storage proteins. It also occurs in the form of monosodium glutamate (MSG), a flavour enhancer that is widely used but often criticised. Due to its important role in metabolism and signalling, the significance of glutamate in nutrition and its impact on human health are vital areas of research in food biochemistry. These investigations contribute to the development of nutritious food products and the design of effective pharmaceuticals. In this paper, we also address unresolved questions in glutamate research and consider its practical applications. Full article
(This article belongs to the Special Issue Food Biochemistry and Health: Recent Developments and Perspectives)
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18 pages, 8048 KiB  
Article
Silicon Nanoparticles Alter Soybean Physiology and Improve Nitrogen Fixation Potential Under Atmospheric Carbon Dioxide (CO2)
by Jingbo Tong
Plants 2025, 14(13), 2009; https://doi.org/10.3390/plants14132009 - 30 Jun 2025
Viewed by 401
Abstract
The interactive effects between nano-silicon dioxide (n-SiO2) and elevated CO2 (eCO2; 645 ppm) on soybean physiology, nitrogen fixation, and nutrient dynamics under climate stress remain underexplored. This study elucidates their combined effects under ambient (aCO2 [...] Read more.
The interactive effects between nano-silicon dioxide (n-SiO2) and elevated CO2 (eCO2; 645 ppm) on soybean physiology, nitrogen fixation, and nutrient dynamics under climate stress remain underexplored. This study elucidates their combined effects under ambient (aCO2; 410 ppm) and eCO2 conditions. eCO2 + n-SiO2 synergistically enhanced shoot length (30%), total chlorophyll (112.15%), and photosynthetic rate (103.23%), alongside improved stomatal conductance and intercellular CO2 (17.19%), optimizing carbon assimilation. Nodulation efficiency increased, with nodule number and biomass rising by 48.3% and 53.6%, respectively, under eCO2 + n-SiO2 versus aCO2. N-assimilation enzymes (nitrate reductase, nitrite reductase, glutamine synthetase, glutamate synthase) surged by 38.5–52.1%, enhancing nitrogen metabolism. Concurrently, phytohormones (16–21%) and antioxidant activities (15–22%) increased, reducing oxidative markers (18–22%), and bolstering stress resilience. Nutrient homeostasis improved, with P, K, Mg, Cu, Fe, Zn, and Mn elevating in roots (13–41%) and shoots (13–17%), except shoot Fe and Zn. These findings demonstrate that n-SiO2 potentiates eCO2-driven benefits, amplifying photosynthetic efficiency, nitrogen fixation, and stress adaptation through enhanced biochemical and nutrient regulation. This synergy underscores n-SiO2 role in optimizing crop performance under future CO2-rich climates, advocating nano-fertilizers as sustainable tools for climate-resilient agriculture. Full article
(This article belongs to the Special Issue Silicon and Its Physiological Role in Plant Growth and Development)
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21 pages, 3636 KiB  
Article
Antioxidant System Disturbances, Bioenergetic Disruption, and Glial Reactivity Induced by Methylmalonic Acid in the Developing Rat Brain
by Cristiano Antonio Dalpizolo, Josyane de Andrade Silveira, Manuela Bianchin Marcuzzo, Vitor Gayger-Dias, Vanessa-Fernanda Da Silva, Camila Vieira Pinheiro, Bruno Pereira dos Santos, Tiago Franco de Oliveira, Carlos-Alberto Gonçalves and Guilhian Leipnitz
Neuroglia 2025, 6(3), 25; https://doi.org/10.3390/neuroglia6030025 - 30 Jun 2025
Viewed by 357
Abstract
Background: Elevated levels of methylmalonic acid (MMA) are observed in the bodily fluids and tissues of patients with methylmalonic aciduria, a metabolic disorder characterized by manifestations such as vomiting, lethargy, muscle weakness, seizures, and coma. Objectives and Methods: To better understand the neuropathological [...] Read more.
Background: Elevated levels of methylmalonic acid (MMA) are observed in the bodily fluids and tissues of patients with methylmalonic aciduria, a metabolic disorder characterized by manifestations such as vomiting, lethargy, muscle weakness, seizures, and coma. Objectives and Methods: To better understand the neuropathological mechanisms underlying this condition, we investigated the effects of intraperitoneal (i.p.) and intracerebroventricular (i.c.v.) administration of MMA on antioxidant defenses, citric acid cycle functioning, and glial reactivity in the cerebral cortex and striatum of Wistar rats. Amino acid levels were also quantified. Results: i.p. and i.c.v. administration of MMA decreased reduced glutathione levels and altered the activities of different antioxidant enzymes in the cortex and striatum. The activity of the citric acid cycle enzyme succinate dehydrogenase was diminished in both brain regions by i.p. and i.c.v. administration. Citrate synthase, isocitrate dehydrogenase, and malate dehydrogenase activities were further inhibited in the striatum. Furthermore, the i.p. administration increased glial fibrillary acidic protein (GFAP) and glucose transporter 1 (GLUT1) levels, whereas i.c.v. administration elevated GFAP and ionized calcium-binding adaptor molecule 1 (IBA1) levels in the striatum, suggesting glial activation. In contrast, no significant changes in glial markers were detected in the cortex. Moreover, synaptophysin levels remained unaltered in both regions. Finally, i.p. administration increased glutamate, glycine, and serine levels and reduced tyrosine concentrations in the striatum. Conclusions: Our findings indicate that oxidative stress, bioenergetic dysfunction, and glial reactivity induced by MMA may contribute to the neurological deficits observed in methylmalonic aciduria. Full article
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21 pages, 2467 KiB  
Article
Chronic Ammonia Stress in Chinese Perch (Siniperca chuatsi): Oxidative Response, Nitrogen Metabolism, and Multi-Enzyme-Mediated Molecular Detoxification Defense Mechanisms
by Yan Li, Ru Yang, Minghui He, Jianmei Su and Liwei Liu
Antioxidants 2025, 14(7), 768; https://doi.org/10.3390/antiox14070768 - 22 Jun 2025
Cited by 1 | Viewed by 469
Abstract
Chinese perch (Siniperca chuatsi), an economically important freshwater fish in China, faces ammonia nitrogen stress under high-density aquaculture. This study investigated chronic ammonia nitrogen exposure effects on juvenile fish (95 ± 5 g) to establish safe concentration. Acute toxicity tests revealed [...] Read more.
Chinese perch (Siniperca chuatsi), an economically important freshwater fish in China, faces ammonia nitrogen stress under high-density aquaculture. This study investigated chronic ammonia nitrogen exposure effects on juvenile fish (95 ± 5 g) to establish safe concentration. Acute toxicity tests revealed a 96 h-LC50 of 12.91 mg/L ammonia nitrogen, with a safe concentration of 1.29 mg/L ammonia nitrogen (non-ionic ammonia: 0.097 mg/L). In 28-day chronic experiments with ammonia nitrogen levels at 0, 0.61, 1.29, and 2.58 mg/L, ammonia nitrogen induced hepatic oxidative stress, with total superoxide dismutase, catalase, and glutathione peroxidase activities and malondialdehyde content increasing proportionally to ammonia nitrogen concentration initially but declining over time. Concurrently, gill Na+-K+-ATPase activity was significantly suppressed, while the gene expression of ammonia transporters (rhag, rhbg, and rhcg) exhibited ammonia nitrogen concentration-dependent upregulation, inversely correlated with the exposure duration. Histological gill damage intensified at higher concentrations. Hepatic ammonia detoxification enzymes activities (asparagine synthase, glutamine synthetase, and glutamate dehydrogenase) and glutamine accumulation increased with ammonia nitrogen levels, aligning with gene expression trends, though enzyme activity diminished over time. Serum alanine aminotransferase and aspartate aminotransferase activities and their gene expressions rose with ammonia nitrogen levels, while total protein declined. These findings demonstrate that chronic ammonia nitrogen stress disrupts antioxidant capacity, osmoregulation, and nitrogen metabolism, compelling Chinese perch to mitigate toxicity via glutamine synthesis. To ensure sustainable aquaculture, ammonia nitrogen levels should remain below 1.29 mg/L under adequate dissolved oxygen conditions. Full article
(This article belongs to the Special Issue The Role of Oxidative Stress in Aquaculture)
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14 pages, 4598 KiB  
Article
Optimized Sugar Beet Seedling Growth via Coordinated Photosynthate Allocation and N Assimilation Regulation
by Kehua Chen, Mingyue Chu, Qing Bai, Lingqing Xu, Yuanhang Zhou, Xiaodong Li, Hao Wang, Wang Xing and Dali Liu
Agriculture 2025, 15(12), 1273; https://doi.org/10.3390/agriculture15121273 - 12 Jun 2025
Viewed by 822
Abstract
Sugar beet is a nitrogen (N)-sensitive crop, and its N regulation and utilization are critical for enhancing productivity. Sugar beet seedlings at the two-true-leaf-pair stage were hydroponically grown in an artificial climate chamber. Leaves and roots from three seedlings per treatment were sampled [...] Read more.
Sugar beet is a nitrogen (N)-sensitive crop, and its N regulation and utilization are critical for enhancing productivity. Sugar beet seedlings at the two-true-leaf-pair stage were hydroponically grown in an artificial climate chamber. Leaves and roots from three seedlings per treatment were sampled at 10, 20, 25, and 30 days after exposure to N treatments (N5: 5 mmol/L, N10: 10 mmol/L, N15: 15 mmol/L, and N20: 20 mmol/L) to assess the effects of N supply level on growth, photosynthesis, and carbon and nitrogen metabolism. The results revealed a time-dependent dynamics in beet biomass accumulation, with N20 inducing chlorosis and necrosis symptoms by 10 days post-treatment (DPT), resulting in the lowest biomass. While N15 significantly promoted root biomass by 30 DPT, showing a 23.70% (root dry weight, RDW) increase over N20; chlorophyll content and gas exchange parameters-net photosynthetic rate (Pn), stomatal conductance (Gs), transpiration rate (Tr) exhibited significant N dependence, with N15 maintaining high chlorophyll level (0.78 mg/g) and photosynthetic rate (220.33 μmol/(m2·s). Nitrogen assimilation, as indicated by glutamine synthetase and glutamate synthetase activity (GS and GOGAT), was stronger under N15, promoting amino acid synthesis and root growth, whereas N20 inhibited enzyme activity. Carbon metabolism analysis revealed that N15-driven sucrose synthesis significantly increased root sucrose content, sucrose phosphate synthase and sucrose synthase activity (SPS and SS), optimizing source–sink allocation. Correlation analysis showed a positive relationship between leaf and root biomass (r = 0.91), and root sucrose content was positively correlated with GOGAT activity (r = 0.90), emphasizing the synergistic regulation of C/N metabolism. On the contrary, N20 led to disrupted C/N metabolic homeostasis, inhibited enzyme activity, and C/N distribution. These results indicated that the photosynthetic output, enzyme efficiency, and sucrose distribution were coordinated by nitrogen optimization, and the growth of sugar beet seedlings was optimized. Full article
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17 pages, 3106 KiB  
Article
Integrative Transcriptomics and Metabolomics Reveal the Key Metabolic Pathways in Endophyte-Infected Rice Seedlings Resistance to Na2CO3 Stress
by Xinnan Wang, Yanan Li, Hefei Sun, Lihong Zhang and Xuemei Li
Plants 2025, 14(10), 1524; https://doi.org/10.3390/plants14101524 - 19 May 2025
Viewed by 582
Abstract
Soil saline-alkalization is a key factor affecting rice growth and physiological metabolism, which leads to reduced yields. Endophyte EF0801 significantly promoted growth and improved its saline-alkali resistance. We investigated growth parameters and physiological indices of endophyte EF0801-infected and control rice seedlings under sodium [...] Read more.
Soil saline-alkalization is a key factor affecting rice growth and physiological metabolism, which leads to reduced yields. Endophyte EF0801 significantly promoted growth and improved its saline-alkali resistance. We investigated growth parameters and physiological indices of endophyte EF0801-infected and control rice seedlings under sodium carbonate (Na2CO3) stress. The results showed that endophyte-infected rice seedlings showed plant height increase by 1.25-fold, root length shortening by 0.79-fold, sucrose synthase (SS), sucrose phosphosynthase (SPS), hexokinase (HXK), and α-glucosidase (α-GC) activities increased by 0.15-fold, 0.29-fold, 0.06-fold, and 1.45-fold, respectively, and β-glucosidase (β-GC) activity decreased by 0.12-fold. Utilizing gas chromatography and mass spectrometry (GC-MS) technology and RNA sequencing (RNA-seq) technology, we identified 419 differentially expressed genes (DEGs) and 37 differentially accumulated metabolites (DAMs). Comprehensive enrichment analysis of DAMs and DEGs showed that 6 DEGs and 6 DAMs were strongly correlated with the mitigating effects of endophytes on rice leaves under Na2CO3 treatment, highlighting the co-enrichment in starch and sucrose metabolism, as well as alanine, aspartate, and glutamate metabolism. The gene encoding HXK was found to be upregulated in endophyte-infected rice seedlings under Na2CO3 stress. HXK plays a key role in the conversion of fructose and glucose to fructose 6-phosphate (F-6-P) and glucose 6-phosphate (G-6-P), which are important intermediates in cellular energy metabolism and glycolytic pathways, providing energy and biosynthesis of precursor substances. Our findings provide a potential perspective for unraveling the molecular response of endophyte-mediated saline-alkali resistance in rice leaves and a theoretical rationale for exploring the mechanisms of growth-promoting effects by endophytes. Full article
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22 pages, 1996 KiB  
Article
Emergent Plants Improve Nitrogen Uptake Rates by Regulating the Activity of Nitrogen Assimilation Enzymes
by Yu Hong, Ruliang Liu, Wenhua Xiang, Pifeng Lei and Xi Fang
Plants 2025, 14(10), 1484; https://doi.org/10.3390/plants14101484 - 15 May 2025
Viewed by 607
Abstract
Effectively utilizing aquatic plants to absorb nitrogen from water bodies and convert it into organic nitrogen via nitrogen assimilation enzyme activity reduces water nitrogen concentrations. This serves as a critical strategy for mitigating agricultural non-point source pollution in the Yellow River Basin However, [...] Read more.
Effectively utilizing aquatic plants to absorb nitrogen from water bodies and convert it into organic nitrogen via nitrogen assimilation enzyme activity reduces water nitrogen concentrations. This serves as a critical strategy for mitigating agricultural non-point source pollution in the Yellow River Basin However, emergent plants’ rate and mechanism of uptake of different forms of nitrogen remain unclear. This study determined the nitrogen uptake rates, nitrogen assimilation activities, root properties, and photosynthetic parameters of four emergent plants, Phragmites australis, Typha orientalis, Scirpus validus, and Lythrum salicaria, under five NH4+/NO3 ratios (9:1, 7:3, 5:5, 3:7, and 1:9) using 15N hydroponic simulations. The results demonstrated that both the form of nitrogen and the plant species significantly influenced the nitrogen uptake rates of emergent plants. In water bodies with varying NH4+/NO3 ratios, P. australis and T. orientalis exhibited significantly higher inorganic nitrogen uptake rates than S. validus and L. salicaria, increasing by 11.83–114.69% and 14.07–130.46%, respectively. When the ratio of NH4+/NO3 in the water body was 9:1, the uptake rate of inorganic nitrogen by P. australis reached its peak, which was 729.20 μg·N·g−1·h−1 DW (Dry Weight). When the ratio of NH4+/NO3 was 5:5, the uptake rate of T. orientalis was the highest, reaching 763.71 μg·N·g−1·h−1 DW. The plants’ preferences for different forms of nitrogen exhibited significant environmental plasticity. At an NH4+/NO3 ratio of 5:5, P. australis and T. orientalis preferred NO3-N, whereas S. validus and L. salicaria favored NH4+-N. The uptake rate of NH4+-N by the four plants was significantly positively correlated with glutamine synthetase and glutamate synthase activities, while the uptake rate of NO3-N was significantly positively correlated with NR activity. These findings indicate that the nitrogen uptake and assimilation processes of these four plant species involve synergistic mechanisms of environmental adaptation and physiological regulation, enabling more effective utilization of different nitrogen forms in water. Additionally, the uptake rate of NH4+-N by P. australis and T. orientalis was significantly positively correlated with glutamate dehydrogenase (GDH), suggesting that they are better adapted to eutrophication via the GDH pathway. The specific root surface area plays a crucial role in regulating the nitrogen uptake rates of plants. The amount of nitrogen uptake exerted the greatest total impact on the nitrogen uptake rate, followed by root traits and nitrogen assimilation enzymes. Therefore, there were significant interspecific differences in the uptake rates of and physiological response mechanisms of emergent plants to various nitrogen forms. It is recommended to prioritize the use of highly adaptable emergent plants such as P. australis and T. orientalis in the Yellow River irrigation area. Full article
(This article belongs to the Special Issue Water and Nitrogen Management in the Soil–Crop System (3rd Edition))
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20 pages, 4054 KiB  
Article
Proline–Nitrogen Metabolic Coordination Mediates Cold Priming-Induced Freezing Tolerance in Maize
by Zhijia Gai, Lei Liu, Na Zhang, Jingqi Liu, Lijun Cai, Xu Yang, Ao Zhang, Pengfei Zhang, Junjie Ding and Yifei Zhang
Plants 2025, 14(10), 1415; https://doi.org/10.3390/plants14101415 - 9 May 2025
Viewed by 402
Abstract
Cold stress critically restricts maize seedling growth in Northeast China, yet the mechanism by which cold priming (CP) enhances cold tolerance through proline–nitrogen metabolic networks remains unclear. This study systematically investigated CP’s synergistic regulation in cold-tolerant (Heyu27) and cold-sensitive (Dunyu213 [...] Read more.
Cold stress critically restricts maize seedling growth in Northeast China, yet the mechanism by which cold priming (CP) enhances cold tolerance through proline–nitrogen metabolic networks remains unclear. This study systematically investigated CP’s synergistic regulation in cold-tolerant (Heyu27) and cold-sensitive (Dunyu213) maize using a two-phase temperature regime (priming induction/stress response) with physiological and multivariate analyses. CP alleviated cold-induced photosynthetic inhibition while maintaining a higher chlorophyll and photosynthetic rate, though biomass responses showed varietal specificity, with Heyu27 minimizing growth loss through optimized carbon–nitrogen allocation. Antioxidant enzymes such as superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) were pre-activated during early stress, effectively scavenging reactive oxygen species (ROS) and reducing malondialdehyde (MDA) accumulation, with Heyu27 showing superior redox homeostasis. CP enhanced proline accumulation via bidirectional enzyme regulation (upregulating ∆1-pyrroline-5-carboxylate synthase/reductase [P5CS/P5CR], inhibiting proline dehydrogenase [ProDH]) and reprogrammed nitrogen metabolism through glutamate dehydrogenase/isocitrate dehydrogenase (GDH/ICDH)-mediated ammonium conversion to glutamate, alleviating nitrogen dysregulation while supplying proline precursors. Principal component analysis revealed divergent strategies: Heyu27 prioritized proline–antioxidant synergy, whereas Dunyu213 emphasized photosynthetic adjustments. These findings demonstrate that CP establishes “metabolic memory” through optimized proline–nitrogen coordination, synergistically enhancing osmoregulation, reactive oxygen species (ROS) scavenging, and nitrogen utilization. This study elucidates C4-specific cold adaptation mechanisms, advancing cold-resistant breeding and stress-resilient agronomy. Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
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17 pages, 4468 KiB  
Article
Integrated Amino Acid Profiling and 4D-DIA Proteomics Reveal Protein Quality Divergence and Metabolic Adaptation in Cordyceps Species
by Chuyu Tang, Yuejun Fan, Tao Wang, Jie Wang, Mengjun Xiao, Min He, Xiyun Chang, Yuling Li and Xiuzhang Li
J. Fungi 2025, 11(5), 365; https://doi.org/10.3390/jof11050365 - 8 May 2025
Viewed by 828
Abstract
To explore the differences in protein quality among classic medicinal entomopathogenic fungi and to evaluate their metabolic adaptability, we analyzed the amino acid composition and proteomic characteristics of Cordyceps sinensis (CS), Cordyceps militaris (CM), and Cordyceps cicadae (CC). Quantitative analysis showed CM contained [...] Read more.
To explore the differences in protein quality among classic medicinal entomopathogenic fungi and to evaluate their metabolic adaptability, we analyzed the amino acid composition and proteomic characteristics of Cordyceps sinensis (CS), Cordyceps militaris (CM), and Cordyceps cicadae (CC). Quantitative analysis showed CM contained the highest crude protein and lysine, methionine, threonine, and valine. CS adapted to high-altitude hypoxia and exhibited lower protein but elevated leucine, isoleucine, and histidine contents, which may contribute to membrane stabilization and oxidative stress resistance. CC displayed higher non-essential amino acids such as arginine, proline, and tyrosine, reflecting active nitrogen metabolism. Four-dimensional data-independent acquisition (4D-DIA) proteomics identified 495 differentially expressed proteins (DEPs). Compared with CS, CM and CC displayed upregulated glutamate oxaloacetate transaminases 2 (GOT2), glutamate dehydrogenase (GDH), and argininosuccinate synthase 1 (ASS1) coordinately regulate nitrogen flux through the alanine-aspartate-glutamate metabolic network and urea cycle, supporting metabolic intermediate replenishment for energy metabolism. The upregulation of branched-chain keto acid dehydrogenase E1 subunit alpha (BCKDHA) and acyl-CoA dehydrogenase short/branched chain (ACADSB) in CM and CC facilitated the integration of branched-chain amino acid catabolism with the TCA cycle, explaining species-specific differences in protein content. This study presents the first application of 4D-DIA proteomics to compare CS, CM, and CC, providing insights into quality divergence mechanisms in medicinal fungi. Full article
(This article belongs to the Special Issue Fungal Metabolomics and Genomics)
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20 pages, 2275 KiB  
Article
The Regulatory Role of Exogenous Carnitine Applications in Lipid Metabolism, Mitochondrial Respiration, and Germination in Maize Seeds (Zea mays L.)
by Hulya Turk, Mucip Genisel and Rahmi Dumlupinar
Life 2025, 15(4), 631; https://doi.org/10.3390/life15040631 - 9 Apr 2025
Viewed by 648
Abstract
The present study aimed to investigate the effects of exogenous carnitine treatments on maize seed germination by stimulating lipid metabolism and regulating the mitochondrial respiratory pathway. Maize seeds were grown as control, 5, 7.5, and 10 μM carnitine treatment groups in a germination [...] Read more.
The present study aimed to investigate the effects of exogenous carnitine treatments on maize seed germination by stimulating lipid metabolism and regulating the mitochondrial respiratory pathway. Maize seeds were grown as control, 5, 7.5, and 10 μM carnitine treatment groups in a germination chamber at 25 °C under dark conditions for 5 d. It was determined that carnitine treatments increased the germination rate (GR), germination index (GI), germination potential (GP), vigor index (VI), root and hypocotyl length, fresh weight (FW), and content of total soluble protein but decreased the total carbohydrate content. It was also found that it increased the activities of α-amylase, isocitrate lyase (ICL), and malate synthase (MS) enzymes, which are critical in the germination process, and upregulated the expression of ICL and MS genes. To clarify the potential of carnitine treatments to promote the participation of lipids in respiration in roots and hypocotyls, lipase, carnitine acyltransferases (CATI and CATII), and citrate synthase (CS) enzyme activities were examined, and significant increases in these activities were detected. It was also found that gene levels of respiratory enzymes cytochrome oxidase (COX), pyruvate dehydrogenase (PDH), and Atp synthase, lipase, and CS proteins were upregulated by carnitine treatment. In support of the enzyme and gene change findings, significant changes were determined in fatty acid contents, free carnitine, and long-chain acylcarnitine levels in seeds, roots, and hypocotyls depending on carnitine application. In roots and hypocotyls, carnitine treatments significantly increased glutamine synthase (GS) and glutamate dehydrogenase (NADH-GDH) activities and gene expression levels, which are closely related to the tricarboxylic acid cycle (TCA). It was also noted that all proteins analyzed at the gene expression level were upregulated by carnitine applications in seeds. In addition, significant increases were recorded in antioxidant enzyme ascorbate peroxidase (APX) and superoxide dismutase (SOD) activities and total ascorbate (AsA) and glutathione (GSH) contents in roots and hypocotyls, while decreases were determined in guaiacol peroxidase (GPX) and catalase activities. Significant changes were recorded in all parameters examined, especially with 7.5 µM carnitine application. The findings suggest that carnitine may promote the transport of fatty acids to mitochondrial respiration by accelerating lipid catabolism in five-day-old maize and contribute to seed germination and growth and development processes by activating other metabolic pathways associated with respiration in this process. Full article
(This article belongs to the Section Plant Science)
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13 pages, 1492 KiB  
Article
Effects of Nitrogen Fertilizer Spraying Time on Source–Sink Nitrogen Metabolism and Seed Oil Quality of Paeonia ostii ‘Fengdan’
by Nannan Zhang, Xingqiao Liu, Xiaolei Ma, Yabing Zhang, Duoduo Wang, Dingding Zuo, Chengwei Song and Xiaogai Hou
Agronomy 2025, 15(4), 892; https://doi.org/10.3390/agronomy15040892 - 3 Apr 2025
Viewed by 575
Abstract
The spraying time of nitrogen fertilizer is a key factor to consider when fertilizing with an intelligent micro-sprinkler irrigation system. This study aims to investigate the impact of nitrogen fertilizer spraying time on the seed oil quality of tree peony, with the expectation [...] Read more.
The spraying time of nitrogen fertilizer is a key factor to consider when fertilizing with an intelligent micro-sprinkler irrigation system. This study aims to investigate the impact of nitrogen fertilizer spraying time on the seed oil quality of tree peony, with the expectation of providing theoretical support for the application of intelligent micro-sprinkler irrigation systems in the production of tree peony. In 2022 and 2023, foliar nitrogen application was conducted on Paeonia ostii ‘Fengdan’ utilizing an intelligent micro-spray irrigation system, with four distinct nitrogen fertilizer spraying times (3:00–4:00, 7:00–8:00, 14:00–15:00, and 19:00–20:00). Based on this, the study assessed nitrogen metabolism indicators in leaves and seeds at various growth stages and the fatty acid composition of seed oil in Paeonia ostii ‘Fengdan’. The results revealed that foliar nitrogen application between 14:00 and 15:00 significantly enhanced the levels of free amino acids (FAA), nitrate reductase (NR), glutamine synthetase (GS), and glutamate synthase (GOGAT) activity in both leaves and seeds. Furthermore, the ratio of α-linolenic acid in the seed oil was significantly increased. Correlation analysis demonstrated a positive or highly significant positive correlation between the levels of nitrogen metabolism indicators and the ratio of unsaturated fatty acids. In conclusion, foliar nitrogen application between 14:00 and 15:00 significantly enhances the FAA content and the activity of nitrogen metabolism enzymes within the leaves and seeds and promotes the synthesis of unsaturated fatty acids in seed oil. This study contributes to the efficient and high-quality cultivation of tree peony. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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16 pages, 2662 KiB  
Article
Vitamin C Modulates the PI3K/AKT Pathway via Glutamate and Nitric Oxide in Developing Avian Retina Cells in Culture
by Aline T. Duarte-Silva, Ivan Domith, Isabele Gonçalves-da-Silva and Roberto Paes-de-Carvalho
Brain Sci. 2025, 15(4), 369; https://doi.org/10.3390/brainsci15040369 - 2 Apr 2025
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Abstract
Background: In addition to its known antioxidant function, the reduced form of vitamin C, ascorbate, also acts as a neuromodulator in the nervous system. Previous work showed a reciprocal interaction of ascorbate with glutamate in chicken embryo retinal cultures. Ascorbate modulates extracellular glutamate [...] Read more.
Background: In addition to its known antioxidant function, the reduced form of vitamin C, ascorbate, also acts as a neuromodulator in the nervous system. Previous work showed a reciprocal interaction of ascorbate with glutamate in chicken embryo retinal cultures. Ascorbate modulates extracellular glutamate levels by inhibiting excitatory amino acid transporter 3 and promoting the activation of NMDA receptors and the consequent activation of intracellular signaling pathways involved in transcription and survival. Objective: In the present work, we investigated the regulation of AKT phosphorylation by ascorbate in chicken embryo retina cultures. Methodology: Cultures of chicken embryo retina cells were tested using Western blot, immunocytochemistry, fluorescent probe transfection, and cellular imaging techniques. Results: Our results show that ascorbate induces a concentration and time-dependent increase in AKT phosphorylation via the accumulation of extracellular glutamate, the activation of glutamate receptors, and the activation of the PI3K pathway. Ascorbate produces an increase in intracellular calcium accumulation and, accordingly, AKT phosphorylation by ascorbate is blocked by the calcium chelator BAPTA-AM. Moreover, AKT phosphorylation is also blocked by the nitric oxide synthase inhibitor 7-nitroindazole, indicating that it is mediated by calcium and nitric oxide-dependent mechanisms. Conclusions: We demonstrate that ascorbate modulates the PI3K/AKT pathway in retinal cultures through the activation of glutamate receptors and NO production in a calcium-dependent manner. Given that previous research has shown that glutamate induces ascorbate release in retinal cultures, our findings emphasize the significance of the reciprocal interactions between ascorbate and glutamate in retinal development. These findings provide further evidence supporting the role of ascorbate as a neuromodulator in retinal development. Full article
(This article belongs to the Special Issue Retinal Neurochemistry and Development)
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18 pages, 2657 KiB  
Article
The Impact of Recreational Diving to a Depth of 40 m on Selected Intracellular DAMPs
by Anna Nowakowska, Małgorzata Marchelek-Myśliwiec, Marta Skórka-Majewicz, Wojciech Żwierełło, Konrad Grzeszczak and Izabela Gutowska
Int. J. Mol. Sci. 2025, 26(7), 3061; https://doi.org/10.3390/ijms26073061 - 27 Mar 2025
Viewed by 622
Abstract
Increasingly popular, recreational diving is a physical activity that takes place under extreme environmental conditions, which include hyperoxia, hyperbaria and exposure to cold water. The effects of these factors on the human body induce increased levels of reactive oxygen and nitrogen species in [...] Read more.
Increasingly popular, recreational diving is a physical activity that takes place under extreme environmental conditions, which include hyperoxia, hyperbaria and exposure to cold water. The effects of these factors on the human body induce increased levels of reactive oxygen and nitrogen species in divers’ bodies, which may modulate damage-associated molecular pattern (DAMPs), their receptors and the antioxidant response. This study involved 21 divers who descended to a depth of 40 metres. Determinations of selected intracellular DAMPs (high-mobility group box protein 1,HMGB1, S100 calcium-binding proteins A9 and A8, S100A8 and S100A9, heat shock protein family A member 1A, HSPA1A (Hsp70), heat shock protein family B, (small) member 1, HSPB1(Hsp27), thioredoxin, TXN), their receptors (Toll-like receptor 4, TLR4 and receptors for advanced glycation end products, RAGE), nuclear factor-κB (NF-κB) and antioxidant defence markers were performed before, after and 1 h after the dive. A significant transient reduction in HMGB1 expression was observed immediately after the dive at both the mRNA and protein levels. We noted an increase in S100A9 expression, which occurred 1 h post-dive compared to the post-dive time point, and a post-dive decrease in TLR4 expression only at the mRNA level. Diving also influenced the expression of genes encoding key enzymes associated with glutathione synthesis, (glutamate-cysteine ligase, catalytic subunit, GCLC and glutathione synthetase, GSS), and reduced plasma glutathione levels. However, no significant changes were observed in the expression of NF-κB, nitric oxide synthase 2 (NOS2) or circulating DAMP receptors (TLR4 and RAGE). The findings suggest an adaptive response to diving-induced oxidative stress, which appears to be a protective mechanism against an excessive inflammatory response. To our knowledge, this is the first study to analyse the role of intracellular DAMPs in recreational divers. Full article
(This article belongs to the Section Molecular Immunology)
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