Search Results (8,506)

Seed germination performance and storability are fundamental components of seed quality and critical for successful crop establishment. However, information on the impact of different crop production systems on the quality and storability of seed material is still limited. Therefore, the aim of this study was to compare the effects of different crop production systems (ecological, integrated, conventional, and monoculture) on seed germination and predisposition for storage. The research was carried out on four varieties of winter wheat. Seed material was produced within a two-year period, during which different weather conditions occurred. Four germination-related traits were assessed: germination capacity NS (%), total germination (TG%), time to reach 50% germination (t50) and the area under the germination curve (AUC). The results demonstrated that the cultivar, the cultivation system and the year of study had a significant impact on germination characteristics. The ecological system ensured the highest germination rate in fresh seeds. However, in the CD test, the conventional system demonstrated the highest levels of stress resistance and stability, suggesting the best storage potential. The significant system × variety interaction demonstrates the importance of accurate matching of the genotype to the growing conditions to ensure optimal seed quality. Furthermore, the data demonstrated a strong influence of climatic conditions in the year of production, which is crucial for seed vigor. Full article

This study considers citrus rootstocks as autonomous biological entities and examines whether, and to what extent, they differently regulate plant–water relations and biomass allocation as well as how such physiological variations translate into differences in vegetative vigor. To address these questions, four citrus genotypes—Sour Orange (SO), Volkamer Lemon (VL), Swingle Citrumelo (CTR), and Troyer Citrange (TC)—were compared with respect to their morphological traits, biomass distribution, and hydraulic properties. These four rootstocks were selected as they represent contrasting genetic backgrounds and well-documented differences in vigor, stress tolerance, and hydraulic behavior, providing an effective model for assessing intrinsic physiological variability. The findings reveal pronounced rootstock-specific differences in water acquisition, transport, and utilization, with direct implications for the hydraulic architecture, leaf water status, and partitioning of biomass between above- and belowground organs. CTR exhibited a highly integrated hydraulic strategy, characterized by elevated conductance across both aerial and root systems and accompanied by greater biomass allocation to the canopy and absorptive roots, resulting in an enhanced overall vigor. SO and VL displayed an intermediate physiological performance, whereas TC demonstrated a restricted hydraulic transport capacity, which is associated with lower biomass allocation, reduced leaf water potential, and diminished vigor. By assessing rootstocks independently of scion influences, this work demonstrates that variations between citrus rootstocks cannot be explained solely by morphological traits but instead reflect contrasting physiological strategies governing the coordinated management of water and carbon resources. These results highlight the rootstock as a central determinant of hydraulic functioning, biomass partitioning, and plant vigor and provide a conceptual basis for selecting rootstocks that are better suited to water-limited environments. Full article

Climate change has intensified drought events, compromising popcorn production, particularly in tropical regions. This study aimed to identify popcorn inbred lines with superior water-use efficiency and responsiveness, and to examine the relationships among morpho-agronomic traits associated with expanded popcorn volume per hectare (VP). Fifty inbred lines were evaluated under well-watered (WW) and water-stressed (WS) conditions across two cropping seasons (2020 and 2021). Water deficit was imposed at pre-anthesis, with the permanent wilting point occurring during early reproductive stages in 2020 and during grain filling in 2021. Principal component analysis and efficiency/responsiveness classification were used to characterize line performance. Significant genotype × water condition × season interactions affected all traits. Water stress reduced VP by 75% in 2020 and 46% in 2021, reflecting the differing timing of stress. Line L477 showed high efficiency and responsiveness, while genotypes such as L213, L221, and L222 were inefficient and non-responsive in both years. Under WW, VP was mainly associated with hundred-grain weight, ear length, and grain number per row, whereas under WS, ear diameter and number of rows per ear were the strongest contributors, indicating that the available genetic variability is more effectively exploited through selective morpho-agronomic criteria tailored to each water scenario. Contrasting crosses between efficient and non-responsive lines (L325 and L481) and inefficient but responsive lines (L513, L625, and L689) are recommended to support the development of hybrids that combine high yield under irrigation with resilience under water-stress conditions. Full article

Background/Objectives: Familial Mediterranean fever (FMF) is a chronic autoinflammatory disorder that can affect cardiac structure and function. However, the impact of different Mediterranean fever (MEFV) gene subtypes on clinical features and subclinical cardiac changes remains unclear. This study aimed to evaluate the association between MEFV gene subtypes, clinical features, and cardiac function in patients with FMF. Methods: A total of 98 patients with FMF were prospectively included. Twelve mutations in the MEFV gene were screened, and the M694V homozygous (Gene-1), M694V heterozygous (Gene-2), and M680I heterozygous (Gene-3) subtypes were analyzed. All patients underwent transthoracic echocardiography and speckle-tracking strain analysis. Results: The age of disease onset was earlier in patients carrying the gene-1 mutation compared to mutation-negative patients (11.4 ± 8.0 and 17.6 ± 11.4 years, respectively; p = 0.025). Disease duration was longer in patients with gene-1 mutation (23.3 ± 12.8 and 12.5 ± 9.3 years, respectively; p < 0.001), and disease activity score was higher (6.41 ± 1.9 and 5.15 ± 1.6, respectively; p = 0.007). Furthermore, left atrial contractile strain was significantly lower in this group (−10.6 ± 3.5% and −14.5 ± 6.1%, respectively; p = 0.012). Arthralgia was more frequent in patients with gene-2 mutation (p = 0.026), while left atrial contractile strain was better preserved compared to mutation-negative patients (p = 0.002). No significant association was found between gene-3 mutation and clinical or cardiac parameters. Conclusions: MEFV gene subtypes have different effects on clinical phenotype and cardiac function in FMF. These findings support the importance of genotype-based cardiac monitoring and risk stratification in FMF patients. Full article

Aspergillus fumigatus is the primary pathogen causing aspergillosis. Recent molecular population genetic studies have demonstrated that A. fumigatus exhibits high local genetic diversity, with evidence for limited differentiation among geographic populations. However, research on the impacts of geomorphological factors on shaping the population genetic diversity patterns of this species remains scarce. In this study, large-scale sampling and in-depth population genetic analysis were performed on soil-derived A. fumigatus from Guizhou Province, a representative karst landscape in southern China. This area is dominated by plateaus and mountains (accounting for 92.5% of the total area) and represents a classic example of conical karst landscapes. A total of 206 A. fumigatus strains were isolated from 9 sampling sites across Guizhou. Genetic diversity, genetic differentiation, and population structure of these strains were analyzed based on short tandem repeats (STRs) at 9 loci. The results revealed that A. fumigatus in the karst region of Guizhou harbors abundant novel alleles and genotypes, with high genetic diversity. Gene flow among geographical populations was infrequent, and significant genetic differentiation was detected between 30 of the 36 pairs of geographical populations where mountain ranges played a very important role, with the overall regional genetic differentiation reaching PhiPT = 0.061 (p = 0.001). Furthermore, the Guizhou populations showed significant differences from those reported in other regions worldwide. Surprisingly, only one of the 206 (0.49%) A. fumigatus isolates from this region exhibited resistance to the two medical triazoles commonly used for treating aspergillosis, and this resistance frequency was far lower than those reported in previous studies from other regions. We discuss the implications of our results for evolution and environmental antifungal resistance management in this important human fungal pathogen. Full article

Dichondra (Dichondra repens) is an important thermophilic Chinese herbal medicine and a key component in traditional herbal tea and beverages. It is also commonly used as an excellent ground cover plant for landscapes and cover cropping in orchards. In temperate and transition zones, thermophilic dichondra often suffers from chilling stress resulting in growth retardation and yield loss. This study aims to compare differences in photochemical efficiency, cell membrane stability, lipid peroxidation, and global lipid remodeling between two dichondra genotypes (chilling-tolerant Dr5 and chilling-sensitive Dr17) in response to a prolonged chilling stress. The results demonstrated that chilling stress significantly accelerated membrane lipid peroxidation and chlorophyll loss, resulting in reduced cell membrane stability and photochemical efficiency in two genotypes. However, Dr5 exhibits less oxidative damage, better cell membrane stability, and higher photochemical efficiency than Dr17 under chilling stress. The analysis of lipidomics found that both Dr5 and Dr17 accumulated phospholipids (Phls), glycoglycerolipids (Glls), and sphingolipids (Spls). More importantly, Dr5 exhibited 95%, 72%, 71%, 526%, 39%, 89%, 131%, 695%, or 865% increase in phosphatidic acid (PA), ceramide (Cer), hexosyl ceramide (Hex1Cer), lyso PA (LPA), lyso phosphatidylcholine (LPC), lyso phosphatidylethanolamine (LPE), lyso phosphatidylglycerol (LPG), lyso phosphatidylinositol (LPI), or lyso phosphatidylserine (LPS) content than Dr17 on day 10 of chilling stress, respectively. Dr5 also maintained significantly higher contents of PC (52%), PE (53%), PI (24%), PS (81%), PG (30%), and digalactosyl diacylglycerol (DGDG, 53%) after 20 days of chilling stress. In addition, two genotypes could maintain a stable unsaturation level of total lipids under chilling stress. These findings indicate that lipid remodeling is attributed to genetic variation in chilling tolerance of dichondra species. The current study provides an interesting data set that could be the starting point for analyzing the underlying mechanisms of chilling tolerance in thermophilic dichondra species. Full article

Bovine tuberculosis is a zoonotic infectious disease of cattle caused by the bacterium Mycobacterium bovis. In adult cattle, transmission is mainly via the respiratory route, whereas, in young calves, oral infection is also common. Congenital tuberculosis is rare. The purpose of this study was to describe in utero infection of a bovine stillbirth. The fetus was necropsied and tissue samples were processed for histopathology, bacteriology and PCR; a sample of the isolated strain was genotyped using spoligotyping. The whole herd was tuberculin skin tested and the dam’s serum was also assessed for the presence of antibodies against bovine tuberculosis with indirect ELISA. The macroscopic findings in different organs were consistent with tuberculosis. The histopathology demonstrated typical granulomatous lesions in the liver, spleen, hepatic and mediastinal lymph nodes. Acid-fast bacilli were observed in the smears stained using the Ziehl–Neelsen method. The colonies isolated were PCR-positive for IS6110 and the spoligotype corresponded to SB0140. The dam of the stillborn was positive for indirect ELISA and reacted to a single caudal skin test with bovine tuberculin. The fetal infection in utero with Mycobacterium bovis was confirmed through necropsy, histopathology and bacteriology, reinforcing the importance of testing young animals. Full article

Gastrointestinal nematodes, particularly Haemonchus contortus, represent a major threat to ruminant health and productivity worldwide, largely due to the widespread emergence of anthelmintic resistance. In Bosnia and Herzegovina, benzimidazole resistance has previously been confirmed in domestic ruminants; however, data on wildlife remain lacking. Given the frequent spatial and temporal overlap between domestic and wild ruminants on shared pastures, this study aimed to investigate the occurrence of benzimidazole-resistant H. contortus genotypes within a multi-host system. During the 2024/2025 season, a total of 111 abomasal samples were collected from sheep (n = 20), lambs (n = 12), goats (n = 17), roe deer (n = 40) and chamois (n = 22) across four localities in Bosnia and Herzegovina (Laktaši, Banja Luka, Modriča and Višegrad). Adult H. contortus specimens were morphologically identified and confirmed using real-time quantitative PCR (rt-qPCR). Benzimidazole resistance was assessed by allele-specific rt-qPCR targeting the F200Y mutation in the β-tubulin isotype 1 gene. Statistically significant interspecies differences in β-tubulin genotype distribution were observed (p < 0.05), primarily driven by variation in the homozygous resistant (RR) genotype. High RR prevalence was detected in sheep (60%), lambs (50%) and roe deer (52.5%), whereas lower proportions were observed in chamois (27.3%) and goats (23.5%). Overall, 44.1% of all analyzed H. contortus isolates carried homozygous resistant alleles, indicating an advanced stage of benzimidazole resistance within this multi-host system. These findings demonstrate that benzimidazole resistance in H. contortus is not confined to domestic livestock but is also present in wild ruminants sharing the same grazing areas, consistent with circulation of resistant parasites within shared grazing systems. Full article

This study investigated single-nucleotide polymorphisms (SNPs) within the CAPN1 316, CAPN1 4751, and CAST 2959 markers using high-resolution melting (HRM) analysis to predict meat tenderness in crossbred beef cattle. Tenderness was assessed using the Warner–Bratzler shear force (WBSF) test, with results expressed in grams (g), representing the force required to shear muscle fibers. Significant differences in phenotypic data were observed among the genotypic groups. The finding showed that polymorphisms at CAPN1 316, CAPN1 4751, and CAST 2959 exert interactive effects on meat quality traits. Notably, the TT genotype at CAPN1 4751 increased the adjusted WBSF (aWBSF) by approximately 792 g, indicating that TT was an unfavorable variant for tenderness. These results support the use of marker-assisted selection strategies in which the TT genotype is managed to minimize its frequency while other relevant markers are concurrently monitored, thereby enhancing genetic progress in meat tenderness across commercial cattle populations. This study demonstrated that CAPN1 4751 could serve as an effective marker for genetic selection in crossbred beef cattle and confirmed the efficiency of HRM analysis as a molecular tool for SNP genotyping. In conclusion, the findings provided an alternative approach for SNP detection in livestock breeding programs and represented an important step toward improving meat quality, meeting consumer expectations, and supporting the long-term sustainability of Thailand’s beef industry. The results highlighted the polygenic nature of meat tenderness and emphasized the importance of integrating multiple SNP markers to accurately assess the genetic potential for meat quality traits in cattle. Full article

The introduction of Super-High-Density (SHD) olive orchards represents a crucial innovation in modern olive growing, enhancing sustainability. However, the long-term success of these planting systems depends strongly on cultivar selection, combining suitable vegetative and reproductive traits. This three-year field study investigated key floral biology parameters—flowering phenograms, gynosterility, and self-compatibility—of ten olive cultivars grown under irrigated conditions in southern Italy: ‘Arbequina’, ‘Arbosana’, ‘Cima di Bitonto’, ‘Coratina’, ‘Don Carlo’, ‘Frantoio’, ‘Favolosa’ (=‘Fs-17’), ‘I-77’, ‘Koroneiki’, and ‘Urano’ (=‘Tosca’). Flowering phenograms varied significantly across years and cultivars, showing temporal shifts related to chilling accumulation and yield of the previous year. Early blooming cultivars (‘Arbequina’, ‘Arbosana’, and ‘Coratina’) exhibited partial flowering overlap with mid-season ones, enhancing cross-pollination opportunities. Quantitative analysis of flowering overlap revealed that most cultivar combinations exceeded the 70% threshold required for effective pollination, although specific genotypes (‘Coratina’, ‘Fs-17’, and especially ‘I-77’) showed critical mismatches, while ‘Frantoio’ and ‘Arbequina’ emerged as the most reliable pollinizers. Gynosterility exhibited statistical differences among cultivars and canopy positions: ‘I-77’ showed the highest values (71.4%), while ‘Coratina’ and ‘Cima di Bitonto’ showed the lowest ones (7.3 and 8.4%, respectively). The median portions of the canopies generally displayed a greater number of sterile flowers (29.4%), reflecting the combined effect of genetic and environmental factors such as light exposure. In the inflorescence, the majority of gynosterile flowers were concentrated in the lower part, for all canopy portions (modal value). Self-compatibility tests were performed considering a fruit set of 1% as a threshold to discriminate. For open pollination, the fruit set was highly variable among cultivars, ranging from 0.5% in ‘I-77’ to 4.7% in ‘Arbosana’. Apart from ‘I77’, all varieties achieved a fruit set greater than 1%. Instead, for the self-pollination, only ‘Arbequina’, ‘Koroneiki’, ‘Frantoio’, and ‘Cima di Bitonto’ could be identified as pseudo-self-compatible, whereas ‘Coratina’, ‘Fs-17’, and the others were clearly self-incompatible and therefore unsuitable for monovarietal orchards in areas with limited availability of pollen. By integrating self-compatibility and gynosterility data, the cultivars were ranked according to reproductive aptitude, identifying ‘Cima di Bitonto’ and ‘Frantoio’ as the most fertile genotypes, whereas ‘Don Carlo’ and particularly ‘I-77’ showed severe genetic sterility constraints. The findings underline the critical role of floral biology in defining reproductive efficiency and varietal adaptability in SHD systems. This research provides valuable insights for optimizing cultivar selection, orchard design, and management practices, contributing to the development of sustainable, climate-resilient olive production models for Mediterranean environments. Full article

Background: Short tandem repeats (STRs) are highly variable sequences present along the human genome, including the Y-chromosome. Y-STRs are exclusive to males, and the haplotypes they define are informative. Objectives: Twenty-six Y-STR loci were genotyped in 252 males from Northern Portugal to characterise Y-chromosome genetic variation using the Investigator Argus Y28 QS Kit. Methods: The kit mentioned was used to amplify male DNA samples, and capillary electrophoresis was used to analyze the fragments. Forensic parameters and haplotype diversity were computed, and samples’ haplogroups were predicted. A multidimensional scaling (MDS) plot was used to graphically represent the R_ST genetic distances, including reference populations. Results: A total of 250 different haplotypes were observed, including 248 unique ones, yielding a very high haplotype diversity (HD = 0.999) and discriminatory power (DP = 0.992). Haplogroup analysis indicated a predominance of R1b (58.7%), followed by E1b1b, I and J, pointing to a population history shaped by Mediterranean and North African gene flow. Comparative analysis between Portugal and 5 other populations showed greater genetic affinity with Spain and Italy, while revealing marked differentiation from Greece, Morocco, and former Portuguese colonies. Conclusions: The results confirm that the Northern Portuguese Population exhibits high Y-STR variability and robust forensic resolution. The dataset was submitted to the YHRD database, enhancing the representation of the Portuguese population and underscoring the value of the 26 locus panel for applications in forensic science, genealogy, and population genetics. Full article

The cacao tree is naturally adapted to shade; however, cultivation in full-sun systems is becoming increasingly common. However, high light intensity can damage the photosynthetic apparatus, making the choice of genotype fundamental to the success of the crop. Thus, in the north of the state of Espírito Santo, municipality of Linhares, the physiological and biochemical responses of the cacao genotypes PS1319, CEPEC 2002, and PH16 were evaluated in agroforestry, cabruca, and full sun cultivation systems during the months of April to October. To this end, chlorophyll a fluorescence, photosynthetic pigments, and carbohydrates were evaluated using a completely randomized split-plot experimental design. Across agroforestry, cabruca (a traditional Brazilian shaded system), and full-sun systems, the cacao genotypes PH16, PS1319, and CEPEC 2002 did not show limitations in photosynthetic performance, as evidenced by the stable values of PI abs and PI total throughout the evaluation period. The highest quantity of photosynthetic pigments was found in the genotypes CEPEC 2002, PH16, and PS1319 in full sun cultivation, in the genotypes PH16 and PS1319 in the agroforestry system, and in the genotype CEPEC 2002 in the cabruca system. The genotypes PH16 and PS1319 obtained higher levels of glucose, sucrose, and fructose, both in shaded environments (agroforestry and cabruca systems) and in full sun. Therefore, due to their greater stability and adaptability, we recommend the PH16 and PS1319 genotypes for cultivation in agroforestry and full-sun systems, and the CEPEC 2002, PH16, and PS1319 genotypes for the cabruca cultivation system. Full article

The technological properties of durum wheat grain are determined by prolamins (gliadins and glutenins). Information on the allelic composition of key loci remains incomplete despite existing global studies examining prolamin variability. This highlighted the need to study these traits in durum wheat in Kazakhstan. The effects of specific gliadin components with high- and low-molecular-weight glutenin fractions on gluten quality are also not fully clarified. This study aimed to characterise allelic diversity at prolamin-coding loci and evaluate associated grain quality traits. Using native and denaturing SDS-electrophoresis, 181 tetraploid wheat accessions from Kazakhstan, an International germplasm collection, and 26 breeding lines were analysed for allelic variation and associations with protein content, gluten content, gluten index, and SDS-sedimentation. The γ45 gliadin component and Glu-A3a allele were positively associated with SDS-sedimentation and gluten index, while Glu-B3b had a negative effect. Distinct prolamin profiles were observed among accessions from different ecological and geographical locations. These results support the selection of superior durum wheat genotypes and enable the identification of favourable allele combinations at the Gli-1, Gli-2, Glu-1, and Glu-3 loci in cultivars from Kazakhstan. Comparison with global tetraploid wheat germplasm collections demonstrates unique genetic diversity in genotypes, providing a valuable basis for breeding programs aimed at improving grain and gluten quality in durum wheat in Kazakhstan and Central Asian countries. Full article

Eyespot is one of the most important fungal diseases of wheat in the Czech Republic. As part of a long-term study (2015–2024), the occurrence, population structure, and pathogenic variability of Oculimacula yallundae and Oculimacula acuformis were investigated. In total, 356 O. yallundae, 24 O. acuformis, and 33 mixed cultures were collected and identified using PCR. The study also included small-plot inoculation trials (2022–2023) to assess the response of widely grown winter wheat cultivars. Disease severity was evaluated visually, pathogen DNA was quantified using qPCR, and the presence of the resistance gene Pch1 was determined with the STS marker Xorw1. In addition to these analyses, monitoring of fungicide resistance to two commonly used fungicides (fluxapyroxad and prothioconazole) was performed. The results showed significant differences among cultivars and seasons. Genotypes carrying Pch1—including Annie, Campesino, Illusion, KWS Donovan, LG Absalon, and Pallas—exhibited the lowest levels of infection, whereas Mercedes and Dagmar were the most susceptible. The qPCR reliably detected and distinguished both pathogens, with O. yallundae occurring at higher concentrations. Fungicide sensitivity testing revealed EC₅₀ values (mean ± SD) of 0.09 ± 0.13 μg·mL⁻¹ for fluxapyroxad and 0.30 ± 0.22 μg·mL⁻¹ for prothioconazole, indicating that eyespot pathogens remain largely sensitive, with only minor signs of reduced sensitivity. Full article

Thrombophilia is considered one of the key mechanisms underlying reproductive disorders. Clinical heterogeneity of reproductive disorders and a lack of stratification by phenotype often limit interpretation. Therefore, evaluating thrombophilia-associated genetic markers separately in fetal loss syndrome, postpartum hemorrhage (PPH), and hypertensive disorders of pregnancy is essential. Background/Objectives: To assess the frequency of thrombophilia-related genetic polymorphisms in women with various reproductive disorders and evaluate their association with clinical–anamnestic characteristics and obstetric antiphospholipid syndrome. Methods: A total of 132 women with reproductive disorders (fetal loss syndrome, postpartum hemorrhage, preeclampsia). Results: Statistically significant differences were found when comparing between the groups. Thus, heterozygous F13 genetic polymorphisms were statistically more common in the group with a history of preeclampsia compared to the group with PPH (the G/A genotype was detected in 22.2% versus 10.7%, p = 0.045), and heterozygous ITGA2 gene genetic polymorphisms were also more common (the C/T genotype was detected in 66.7% versus 42.9%, p = 0.023). In women with a history of PPH, homozygous ITGA2 genetic polymorphisms were statistically more common (the T/T genotype was detected 2.6 times more often—21.4% versus 8.8% compared to the group with fetal loss syndrome, p = 0.022; and 3.8 times more often—21.4% versus 5.6% compared to the group with PE, p = 0.022). Conclusions: A study of thrombophilia gene polymorphisms in women with reproductive disorders showed that the G/A genotype of F13, the C/T genotype of ITGA2, and the A/G genotype of MTR:2756 were significantly more common in women with preeclampsia than in the group with postpartum hemorrhage; the T/T genotype of the ITGA2 gene was detected in postpartum hemorrhage. The MTHFR 1286A > C (A/C) polymorphism was associated with a reduced risk of postpartum hemorrhage. In contrast, the MTR 2756A > G (A/G) genotype was associated with an increased risk of preeclampsia. Full article