Search Results (952)

Methicillin-resistant Staphylococcus aureus (MRSA) remains a significant multidrug-resistant pathogen, frequently associated with persistent infections and biofilm formation, underscoring the urgent need for alternative antimicrobial strategies. Bioactive compounds derived from fungi have attracted considerable attention due to their structural diversity and demonstrated antibacterial activity against MRSA. This study employed a scientometric approach to assess global research trends, thematic evolution, and collaborative networks concerning fungi-derived anti-MRSA compounds. Bibliographic data were collected from the Scopus database, and a total of 1666 English-language articles and reviews published up to 2025 were analyzed using Bibliometrix/Biblioshiny and VOSviewer. The findings indicate a marked increase in research output after 2010, reflecting heightened scientific interest in fungal natural products for MRSA management. China and the United States emerged as leading contributors in terms of publication volume and international collaboration. Thematic analysis revealed a shift from broad antimicrobial screening to more specialized investigations, including antibiofilm activity, secondary metabolites, endophytic fungi, molecular docking, and antimicrobial resistance. Nonetheless, several challenges persist, such as insufficient mechanistic validation, limited toxicity and pharmacokinetic assessments, and a lack of clinically relevant in vivo studies. Overall, the field is increasingly multidisciplinary, integrating microbiology, natural product chemistry, and computational methodologies to advance the discovery of anti-MRSA agents. Full article

Desertification strongly alters soil microbial communities in dryland ecosystems, yet the reassembly of fungal functional groups and their interactions under increasing aridity remain unclear. This study aimed to determine how desertification reshapes arbuscular mycorrhizal fungi (AMF) and endophytic fungal groups in the rhizosphere of Stipa breviflora and Artemisia frigida, as well as how these shifts are associated with fungal network fragmentation. Rhizosphere soil internal transcribed spacer (ITS) sequencing and AMF-specific amplicon sequencing, combined with root colonization assessment, functional annotation, co-occurrence network analysis, and partial least squares path modeling (PLS-PM), were used to assess shifts in fungal communities along the desertification gradient. Desertification significantly reduced soil multifunctionality and fungal diversity, accompanied by a shift in community composition from environmentally sensitive taxa to stress-tolerant groups. Along the desertification gradient, AMF diversity and colonization decreased, whereas FUNGuild-inferred endophytic fungal abundance and microscopically observed dark septate endophytes (DSEs) colonization increased. FUNGuild-inferred endophytic fungal abundance was negatively correlated with AMF diversity. Co-occurrence networks showed reduced connectivity and increased fragmentation under desertification, especially at the desert steppe and steppe desert stages. PLS-PM analysis revealed that desertification directly increased fungal network fragmentation and indirectly promoted fragmentation through increased FUNGuild-inferred endophytic fungi and reduced AMF diversity, whereas soil multifunctionality mainly reflected environmental deterioration along the gradient. These findings demonstrate the functional reassembly of rhizosphere fungi under desertification and suggest that compensatory shifts among fungal guilds may contribute to ecosystem stability in dryland grasslands. Full article

Medicine food homology (MFH) plants are rich in nutrients and bioactive specialized metabolites, and their endophytic fungi mediate key biotransformation of host secondary metabolites. Licorice, a representative MFH herb, accumulates glycyrrhizin (GL) as its dominant bioactive triterpenoid saponin. Its hydrolysates glycyrrhetinic acid (GA) and glycyrrhetinic acid 3-O-mono-β-D-glucuronide (GAMG) show stronger bioactivity and bioavailability than GL. However, the enzymatic mechanisms of licorice-derived endophytic fungi-mediated GL biotransformation remain unclear. Here, nine licorice endophytic fungi were screened for significant GL-inducible β-glucuronidase activity. Four functional GH2 β-glucuronidase were obtained by prokaryotic and eukaryotic expression systems, and confirmed to catalyze glycyrrhizin biotransformation via two distinct hydrolytic pathways. Inoculation of these four strains into licorice markedly enhanced host glycyrrhizin accumulation. This study provides novel enzymatic resources for the efficient bioproduction of high-value glycyrrhizin derivatives, and proposes a green strategy to improve glycyrrhizin content in licorice, deepening the understanding of endophyte–host metabolic crosstalk in medicinal herbs. Full article

Arthrinium-like fungi in the family Apiosporaceae are taxonomically complex and still require a thorough characterization despite recent phylogenetic reassessments. This study aimed to investigate the diversity and taxonomic position of endophytic Arthrinium-like fungi associated with Itea japonica and I. riparia in Thailand. Two fungal strains discovered from healthy stems of these hosts were characterized by integrative approaches including morphology, multi-locus phylogenetic analyses based on ITS, LSU, TEF1-α, TUB2 sequence data, and nucleotide base–pair comparisons. One isolate from I. japonica is introduced as Nigrospora iteae sp. nov. supported by distinct morphological traits, a well-resolved phylogenetic placement, and significant nucleotide difference from its closest relatives. The second isolate was identified as Apiospora vietnamensis and is reported herein as a new host record for I. riparia based on morphological congruence, a close phylogenetic relationship, and TUB2 nucleotide similarity with the type strain. In addition, a new species, Apiospora fici, originally described from dead leaves of Ficus septica in Taiwan, is reclassified based on updated phylogenetic analyses to clarify its taxonomic placement within Apiosporaceae. Furthermore, Nigrospora wurfbainiae nom. nov. is proposed as a replacement name for the later homonym N. guangdongensis. A summary of important morphological characteristics, host relationships, current distribution, and biological activities of Nigrospora species is provided. This study emphasizes the previously unrecognized fungal diversity within Itea hosts and offers new insights into species diversity and phylogenetic relationships within the Apiosporaceae. Full article

Background: Symbiotic fungi play essential roles throughout the entire cycle of orchid plants, including seed germination, seedling development, and maturation. Dendrobium officinale Kimura & Migo (Orchidaceae) (D. officinale) is a rare and highly valued traditional Chinese medicinal herb. Currently, artificial breeding using tissue culture technology is widely adopted and essential in the Dendrobium industry; however, this approach may impair or disrupt the plant’s ability to establish and maintain symbiotic relationships with mycorrhizal fungi. Methods: In this study, the fungal endophyte community (FEC) in the roots of D. officinale cultivated under four different modes was analyzed using high-throughput sequencing. Correlation analyses were also carried out to examine the relationships between bioactive compounds and the FEC. Results: (1) The FEC in D. officinale roots was dominated by Ascomycota and Basidiomycota, with significant differences in abundance, diversity, and community structure among cultivation modes; (2) the FEC under greenhouse cultivation differed significantly from those under tree epiphytic cultivation in terms of fungal nutritional types and dominant taxa; (3) six major mycorrhizal fungal taxa were identified in Dendrobium roots, although non-mycorrhizal fungi accounted for approximately 97% of the community; and (4) polysaccharide content in Dendrobium stems was positively correlated with certain root fugal endophytes (Exophiala, alaromyces, Pseudodactylaria, and Fellomyces). Conclusions: This study provides a foundation for understating the growth of D. officinale under different cultivation modes and highlights the relationship between bioactive compound accumulation and fungal endophyte communities. Full article

This study explores the use of endophytic fungi for the biocontrol of harmful aflatoxins (AFTs) in maize (Zea mays L.). The main objective of this study was to evaluate the effects of fungal pathogens and biocontrol agents on the corn seed germination and growth of seedlings under controlled conditions. Experiments were conducted under laboratory conditions in a growth chamber and in a greenhouse to assess the influence of environmental factors on seed performance and treatment efficacy. The growth chamber provided uniform conditions for physiological assessment while the greenhouses represented more realistic field conditions. Corn kernels were sown in sterile pots inside the growth chamber at standard conditions or in the greenhouse at controlled conditions and four treatment groups were established: untreated control seeds, seeds treated with non-AFT-producing (non-aflatoxigenic) strains (Trichoderma harzianum, T. asperellum and Aspergillus niger), seeds inoculated with AFT-producing (aflatoxigenic) strains (A. flavus and A. parasiticus), and seeds co-inoculated with both aflatoxigenic and non-aflatoxigenic strains (A. flavus and A. parasiticus with T. harzianum, T. asperellum or A. niger). High-performance liquid chromatography was utilized to detect and analyze the presence of AFTs. Co-culturing of A. flavus with T. harzianum resulted in a significant decrease in AFT levels, achieving a relative reduction of 99.3% compared to aflatoxigenic treatments alone. Among the isolates tested, T. harzianum and T. asperellum were the most effective at lowering AFT production of the aflatoxigenic strains, reducing the 5120 ± 560 µg/kg AFT level produced by A. flavus alone to 50.1 ± 1.10 and 63.1 ± 3.1 µg/kg, respectively. A. flavus negatively affected germination and early growth, whereas T. harzianum significantly enhanced both parameters. This study demonstrates that non-aflatoxigenic Trichoderma isolates can effectively mitigate AFT contamination and improve seedling growth, highlighting their potential as effective. sustainable, and locally adopted biocontrol agents for Pakistan’s chronic AFT problem under diverse environmental conditions—an area with minimal prior research and high national relevance. Full article

To explore efficient and sustainable biocontrol resources against anthracnose in Begonia benariensis, endophytic fungi were isolated from healthy host tissues and screened for antagonistic activity against Colletotrichum aotearoa SWBG5. Among 31 isolates, four showed strong inhibition, and the most potent strain, QYN6, exhibited an in vitro mycelial inhibition rate of 63.67%. Based on morphology and multi-gene phylogeny (ITS, TUB2, TEF-1α), QYN6 was identified as Nigrospora sphaerica. Mechanistic assays revealed that QYN6 secretes multiple cell wall-degrading enzymes (chitinase, β-1,3-glucanase, cellulase, protease) and displays hyperparasitism against the pathogen hyphae (entwining, deformation, swelling), acting synergistically to inhibit fungal growth. In greenhouse pot trials, QYN6 achieved a biocontrol efficacy of 48.91% against Begonia anthracnose. Additionally, QYN6 significantly activated host defense responses, increasing the activities of antioxidant enzymes (SOD, POD, PPO, CAT) and the contents of soluble protein and soluble sugar. Furthermore, QYN6 exhibited multiple plant growth-promoting traits, including IAA production, siderophore synthesis, and potassium solubilization. Inoculation with QYN6 markedly improved plant height, leaf number, root length, and biomass of B. benariensis. Overall, N. sphaerica QYN6 possesses dual biocontrol and growth-promoting potential, providing a promising microbial resource and theoretical basis for green management of Begonia anthracnose. Full article

Mucormycosis is a devastating invasive fungal infection primarily caused by Mucor and Rhizopus species, presenting significant clinical challenges due to limited therapeutic options and emerging drug resistance in opportunistic yeasts such as Candida albicans. This study explores foliar endophytic fungi from Thai medicinal plants as potential reservoirs for novel bioactive metabolites targeting both fungal growth and virulence factors. We report the first isolation of Fusarium proliferatum as an endophyte from Lantana camara L. foliage (voucher number 01562), with its identity confirmed through morphological characterization and sequencing of the fungal ITS4/ITS5 regions. Antifungal susceptibility testing showed potent activity against a panel of environmental Mucorales, with minimum inhibitory concentrations (MICs) ranging from 0.3 to 1 mg/L. In dual-culture assays, F. proliferatum demonstrated significant mycelial inhibition rates of 93.30% to 93.67% against Mucor spp. and 88.67% to 93.67% against Rhizopus spp. Furthermore, the crude extract exhibited a potent anti-virulence effect by suppressing the C. albicans yeast-to-hyphal transition, achieving up to 68% germination inhibition in resistant strains. Liquid chromatography–mass spectrometry (LC-MS) analysis identified 51 secondary metabolites, including the cyclic peptide beauvericin and various polyketides and indole derivatives. These findings suggest that F. proliferatum utilizes metabolic mimicry and adaptive synergy with its host plant to produce a diverse chemical arsenal. This study positions foliar endophytes of L. camara as promising candidates for the development of dual-action therapeutics to combat invasive and resistant mycoses. Full article

Endophytic fungi contribute substantially to plant health, yet the diversity, community composition, and tissue distribution of culturable fungal endophytes in sweetpotato remain poorly characterized. In this study, endophytic fungi were isolated from roots, old stems, tender stems, petioles, and leaves of the scab-resistant leafy variety ‘Guangcaishu 16–19’, the scab-susceptible leafy variety ‘Guangcaishu No. 5’, and the tuberous variety ‘Guangshu 87’ were identified based on morphological characteristics and ITS sequencing. ITS sequencing identified 492 fungal isolates belonging to 63 putative taxa in 31 genera. Colletotrichum was the dominant genus in the leafy varieties, whereas Chaetomium was dominant in the tuberous variety. The isolated endophytic fungi were widely distributed and tissue-specific, with genus-level distribution following the pattern “leaves and stems > roots”. Alpha diversity followed the order ‘Guangcaishu 16–19’ > ‘Guangcaishu No. 5’ > ‘Guangshu 87’. The fungal communities of the leafy varieties were the most similar, and their root-associated communities exhibited higher alpha diversity than those of the tuberous variety. In addition, scab-resistant varieties exhibited higher endophytic fungal diversity. Overall, endophytic fungal communities in sweetpotato exhibited high alpha diversity, and significant differences in community structure were observed among variety tissues. These findings provide culturable fungal resources for future screening of beneficial endophytic fungi, bioactive metabolites, and potential biocontrol agents. Full article

Ginger (Zingiber officinale Roscoe) is a high-value horticultural crop widely cultivated for its culinary and medicinal applications, yet its production is increasingly constrained by soil-borne diseases. Among these, Fusarium yellows, caused by Fusarium oxysporum f. sp. zingiberi (Foz), is one of the most damaging constraints in ginger-growing regions around the world, leading to progressive yellowing, vascular blockage, and decline in rhizome quality. Members of the Fusarium oxysporum species complex are known to include both pathogenic and non-pathogenic lineages that often co-occur within the same host and environment, complicating disease diagnosis and epidemiological understanding. In this study, we examined Fusarium-like isolates recovered from both symptomatic and symptomless ginger plants within Southeast Queensland, the major ginger production region in Australia. We then investigated the genetic diversity, effector gene content, and pathogenic potential of these isolates. Comparative analyses revealed two genetically and functionally distinct groups: a clonal Foz lineage consistently associated with Fusarium yellows symptoms and characterised by a conserved set of Secreted In Xylem (SIX) effector genes (SIX7, SIX9, SIX10, and SIX12) and a diverse set of F. oxysporum isolates lacking these effectors. The conserved presence and co-localisation of SIX7, SIX10, and SIX12 within a 5 kb region on a 1.4 Mb contig in the Foz lineage is consistent with the retention of a stable lineage-specific effector module, likely associated with accessory genomic regions that may contribute to host specificity and pathogenicity in the Fusarium oxysporum species complex. Pathogenicity assays confirmed that only the Foz lineage induced disease, whereas non-Foz isolates caused no visible symptoms despite limited colonisation of host tissues. These findings highlight the coexistence of pathogenic and endophytic Fusarium lineages within ginger production systems and support the use of effector-based markers for improved detection and disease management. Full article

Background: Soil degradation in intensive tea plantations necessitates sustainable management. Straw application (S) is a promising practice, yet its integrated effects on soil fungal communities in acidic tea soils require comprehensive evaluation. Methods: High-throughput sequencing based on the primers of fungal ITS1F-ITS2 was conducted on soils from tea plantations with/without straw application (S and CK, respectively). Analyses encompassed community structure, α- and β-diversity, differential taxa, co-occurrence networks, the main drivers by soil properties, and functional prediction. Results: The core fungal community structure except for Basidiomycota, and diversity remained stable under S. However, 17 ASVs responded as significant biomarkers, including fine-scale shifts within the genus Sebacina. S modified the complexity of the fungal co-occurrence network with enhancing its modularity and integration and increasing keystone connectors, while overall network cohesion was maintained. Soil available phosphorus (AP), soil organic matter (SOM) and nitrate nitrogen (NO₃⁻-N) were the dominant drivers of fungal amplicon sequence variants (ASVs), with water content (WC) the main driver of fungal keystones. Functionally, S selectively affects the richness of Symbiotrophs (including endophytes) without altering the relative abundance structure of major trophic guilds. Conclusions: S acts as a modulator, refining fungal network architecture and interactions within the resilience threshold of the community, offering a viable practice for sustainable tea soil management. Full article

Dioecious plant species display sexual dimorphism in terms of their morphological and physiological properties. However, little is known about the differentiation among endophytes within female versus male members of dioecious host plants. Hence, the endophyte diversity and composition of different tissues of male and female Hippophae tibetana were investigated using amplicon sequencing, and key factors driving the differences were determined. The results showed that there were divergences in endophytic diversity, community composition, connectivity and complexity of the co-occurrence network between females and males H. tibetana. The females and males owned their unique phyla of endophytic bacteria (Fusobacteriota and Chloroflexi, respectively). Significant enrichment of species at different levels was found between females and males, suggesting that these species could be potential biomarkers for male and female H. tibetana. Variance partitioning analysis (VPA) and Spearman analysis revealed that the phytostoichiometry and metabolites of H. tibetana explained more differences in community composition of fungal and bacterial endophytes than rhizosphere soil physicochemical properties, and endophytes exhibited a significant positive correlation with the phytostoichiometry and metabolites of H. tibetana. PICRUSt and FUNGuild predictive analyses revealed differences in endophytic fungal function between female and male H. tibetana, while the endophytic bacterial functions were metabolism. These results reveal the sexual differentiation of endophytes in dioecious plants and provide important knowledge for dioecious plant–microbe interactions. Full article

Seed-associated endophytes become active during germination, playing important roles as early colonizers of plant tissues and contributing to plant health while residing in a protective niche. In this study, we characterized a wheat-derived bacterial isolate, JunSE1L, to determine its functional traits and ecological role in the plant microbiome. The isolate was identified as Bacillus atrophaeus based on 16S rRNA analysis. JunSE1L exhibited nutrient-dependent plasticity in colony architecture, forming robust hydrophobic biofilms and pellicles under rich nutrient availability while swarming and forming thin, often dendritic colonies under defined nutrition. JunSE1L produced highly surface-active compounds that lowered the surface tension of water to 30 mN/m and released potent proteolytic and hemolytic compounds, thus equipping JunSE1L for antagonistic interactions, as examined against several fungal pathogens. JunSE1L inhibited Fusarium proliferatum and Mucor hiemalis in live-cell assays, while cell-free supernatant selectively inhibited M. hiemalis. JunSE1L was recovered from multiple plant compartments, including rhizosphere, rhizoplane, and aerial tissues, and was observed to emerge from cut plant tissues, supporting seed-endophyte mobilization upon germination to colonize distal tissues. Seed surface inoculation experiments with JunSE1L showed limited attachment at low cell densities and reduced seedling vigor at higher inoculum levels, indicating that inoculum density and native microbiome interactions influence seedling performance. Full article

As microplastic pollution intensifies, its impact on soil microbial communities has drawn widespread attention. This study treated soil samples with five microplastics, including polystyrene (PS), polyethylene (PE), polypropylene (PP), polyvinyl chloride (PVC), and polyethylene terephthalate (PET), to assess effects on soil properties. High-throughput sequencing was used to analyze soil fungal community structure and functional diversity. Results showed that microplastic treatments significantly altered pH, total carbon (TC), ammonium nitrogen (NH₄⁺-N), nitrate nitrogen (NO₃⁻-N), and available phosphorus (AP). Notably, all treatments reduced NO₃⁻-N levels. Fungal community composition was affected, particularly Mortierellomycota and the genera Mortierella, Plectosphaerella, Pseudogymnoascus, Penicillium, Tuber, and Stachybotrys. Functional analysis revealed decreases in certain groups, especially Endophyte–Plant Saprotroph–Undefined Saprotroph and Endophyte–Plant Pathogen–Plant Saprotroph, in PE, PS, and PVC treatments. Mantel analysis further indicated that soil pH, NH₄⁺-N, and NO₃⁻-N significantly influenced fungal communities. These results highlight that microplastic pollution alters soil properties, thereby affecting fungal communities in a microplastic-type dependent manner, providing a theoretical basis for soil health management and pollution mitigation. Full article

In vitro cultured plant calli, induced through dedifferentiation, are colonized by diverse endophytes. Most of these endophytes, being substantially inherited from the mother plant and highly dependent on the host’s internal ecological niche, are termed host-dependent endophytes (HDEs). Due to their close association with their hosts, HDEs exhibit heritable characteristics. However, our current understanding of plant HDEs and their effects on the host plant is limited. In this study, we characterized the composition and potential functions of the endophytic microbiota in grapevine calli derived from different varieties and organs corresponding to Cabernet Sauvignon berry flesh (CF), Rose Honey berry flesh (RF), and Rose Honey shoot tip (RS) using high-throughput sequencing and bioinformatics. Our results showed that the genotype and organotype of the explant did not affect the alpha diversity of endophytes in callus, but were associated with differences in beta diversity and community structure of the endophytic microbiota. Different types of grapevines calli inherited distinct endophytes from their mother plants, whereas sharing a conservative core endophytic microbiota consisting of a small number of amplicon sequence variants (ASVs) with high relative abundances (bacteria: 38 ASVs ranging from 79 to 92%; fungi: 9 ASVs ranging from 32 to 58). Prediction analyses using revealed conserved functional traits of the endophytic microbiota across callus types, including a core suite of bacterial adaptive phenotypes, stable central metabolism dominated by oxidative phosphorylation, and uniformly structured fungal communities dominated by saprotrophs and pathotrophs, while consistently containing yeast-form fungi. Although minor variations such as elevated trait abundance in the CF group were noted, no statistically significant functional divergence was observed, demonstrating that the endophytic microbiota of grapevine callus maintains a conserved functional profile across different types. Collectively, this study provides a methodological framework for investigating plant HDEs and offers new insights into host-endophyte interactions at the cellular level. Full article