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25 pages, 7934 KiB  
Article
An Improved InTEC Model for Estimating the Carbon Budgets in Eucalyptus Plantations
by Zhipeng Li, Mingxing Zhou, Kunfa Luo, Yunzhong Wu and Dengqiu Li
Remote Sens. 2025, 17(15), 2741; https://doi.org/10.3390/rs17152741 (registering DOI) - 7 Aug 2025
Abstract
Eucalyptus has become a major plantation crop in southern China, with a carbon sequestration capacity significantly higher than that of other species. However, its long-term carbon sequestration capacity and regional-scale potential remain highly uncertain due to commonly applied short-rotation management practices. The InTEC [...] Read more.
Eucalyptus has become a major plantation crop in southern China, with a carbon sequestration capacity significantly higher than that of other species. However, its long-term carbon sequestration capacity and regional-scale potential remain highly uncertain due to commonly applied short-rotation management practices. The InTEC (Integrated Terrestrial Ecosystem Carbon) model is a process-based biogeochemical model that simulates carbon dynamics in terrestrial ecosystems by integrating physiological processes, environmental drivers, and management practices. In this study, the InTEC model was enhanced with an optimized eucalyptus module (InTECeuc) and a data assimilation module (InTECDA), and driven by multiple remote sensing products (Net Primary Productivity (NPP) and carbon density) to simulate the carbon budgets of eucalyptus plantations from 2003 to 2023. The results indicated notable improvements in the performance of the InTECeuc model when driven by different datasets: carbon density simulation showed improvements in R2 (0.07–0.56), reductions in MAE (5.99–28.51 Mg C ha−1), reductions in RMSE (8.1–31.85 Mg C ha−1), and improvements in rRMSE (12.37–51.82%), excluding NPPLin. The carbon density-driven InTECeuc model outperformed the NPP-driven model, with improvements in R2 (0.28), MAE (−8.15 Mg C ha−1), RMSE (−9.43 Mg C ha−1), and rRMSE (−15.34%). When the InTECDA model was employed, R2 values for carbon density improved by 0–0.03 (excluding ACDYan), with MAE reductions between 0.17 and 7.22 Mg C ha−1, RMSE reductions between 0.33 and 12.94 Mg C ha−1 and rRMSE improvements ranging from 0.51 to 20.22%. The carbon density-driven InTECDA model enabled the production of high-resolution and accurate carbon budget estimates for eucalyptus plantations from 2003 to 2023, with average NPP, Net Ecosystem Productivity (NEP), and Net Biome Productivity (NBP) values of 17.80, 10.09, and 9.32 Mg C ha−1 yr−1, respectively, offering scientific insights and technical support for the management of eucalyptus plantations in alignment with carbon neutrality targets. Full article
19 pages, 1225 KiB  
Article
Exposure of Domestic Cats (Felis catus) to Rodenticidal Compounds
by Vesna Cerkvenik-Flajs, Detlef Schenke, Simona Korenjak-Černe, Anton Perpar, Jens Jacob, Susanne Schwonbeck, Sven Kleine Bardenhorst, Torsten Hahn, Marko Cvetko and Mitja Gombač
Toxics 2025, 13(8), 663; https://doi.org/10.3390/toxics13080663 (registering DOI) - 7 Aug 2025
Abstract
Anticoagulant rodenticides (ARs) are highly effective, but can be of environmental concern due to primary and secondary non-target exposure, with the latter possible being relevant to domestic cats. Therefore, liver residues of ARs and an alternative rodenticide, α-chloralose, were systematically monitored in domestic [...] Read more.
Anticoagulant rodenticides (ARs) are highly effective, but can be of environmental concern due to primary and secondary non-target exposure, with the latter possible being relevant to domestic cats. Therefore, liver residues of ARs and an alternative rodenticide, α-chloralose, were systematically monitored in domestic cats for the first time in the current study. In 2021 and 2022, the carcasses of 99 cats were collected in Slovenia and liver residues were measured by using solid supported liquid–liquid extraction and LC-MS/MS. The results show that 65% of cats carried at least one rodenticide. The second-generation ARs brodifacoum and bromadiolone were most prevalent and found in 53.5 and 25.3% of the samples, respectively. Of first-generation ARs, coumatetralyl was the most prevalent (21.2% of cats). More compounds were detected at high human population density, low farm density and in rural versus intermediate landscapes, but no effect was found for livestock density. Similar trends were found for the presence of brodifacoum, bromadiolone and all rodenticides combined. Farm density was negatively correlated with brodifacoum liver concentration. Individual factors (cat age, sex, outdoor activity) did not matter. The results indicate that a reasonably populated rural landscape, and not the rural or intermediate environment as such, is the main driver of cat exposure to ARs. The risk quotient (RQ) of worst-case acute brodifacoum poisoning was 1506. In summary, a potential environmental problem is globally highlighted for cats that is probably related to secondary exposure to ARs, with a pattern different to that seen in wild predators. Cats are an appropriate sentinel species for assessing rodenticide exposure and endangerment in the environment. Full article
(This article belongs to the Section Exposome Analysis and Risk Assessment)
19 pages, 10210 KiB  
Article
Evaluating Landscape Fragmentation and Consequent Environmental Impact of Solar Parks Installation in Natura 2000 Protected Areas: The Case of the Thessaly Region, Central Greece
by Ioannis Faraslis, Vassiliki Margaritopoulou, Christos Christakis and Efthimios Providas
Sustainability 2025, 17(15), 7158; https://doi.org/10.3390/su17157158 (registering DOI) - 7 Aug 2025
Abstract
This study examines the adverse environmental impacts of solar photovoltaic parks located in established protected areas, aiming to determine the level of landscape fragmentation through the calculation of relevant landscape metrics. For this purpose, a case study was carried out in a Mediterranean [...] Read more.
This study examines the adverse environmental impacts of solar photovoltaic parks located in established protected areas, aiming to determine the level of landscape fragmentation through the calculation of relevant landscape metrics. For this purpose, a case study was carried out in a Mediterranean Natura 2000 Special Protection Area (SPA), and landscape metrics were calculated using Geographic Information System spatial analysis tools. The analysis of metrics showed that the installation of renewable energy parks within the designated protected area negatively affect landscape fragmentation and the absence of carefully defined and evidence-based mitigation measures. The land cover categories that are significantly affected are those considered critical habitats of bird species that have been designated as SPAs. The results of this study highlight the need to integrate, in the National Renewable Energy Spatial Plans, specific biodiversity objectives, such as conservation objectives and the suspension of the installation of photovoltaic parks in certain areas that are important for conservation of biodiversity, in order to ensure the overall sustainability of renewable energy production. Full article
(This article belongs to the Special Issue Environmental Protection and Sustainable Ecological Engineering)
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21 pages, 510 KiB  
Review
IoT and Machine Learning for Smart Bird Monitoring and Repellence: Techniques, Challenges, and Opportunities
by Samson O. Ooko, Emmanuel Ndashimye, Evariste Twahirwa and Moise Busogi
IoT 2025, 6(3), 46; https://doi.org/10.3390/iot6030046 (registering DOI) - 7 Aug 2025
Abstract
The activities of birds present increasing challenges in agriculture, aviation, and environmental conservation. This has led to economic losses, safety risks, and ecological imbalances. Attempts have been made to address the problem, with traditional deterrent methods proving to be labour-intensive, environmentally unfriendly, and [...] Read more.
The activities of birds present increasing challenges in agriculture, aviation, and environmental conservation. This has led to economic losses, safety risks, and ecological imbalances. Attempts have been made to address the problem, with traditional deterrent methods proving to be labour-intensive, environmentally unfriendly, and ineffective over time. Advances in artificial intelligence (AI) and the Internet of Things (IoT) present opportunities for enabling automated real-time bird detection and repellence. This study reviews recent developments (2020–2025) in AI-driven bird detection and repellence systems, emphasising the integration of image, audio, and multi-sensor data in IoT and edge-based environments. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses framework was used, with 267 studies initially identified and screened from key scientific databases. A total of 154 studies met the inclusion criteria and were analysed. The findings show the increasing use of convolutional neural networks (CNNs), YOLO variants, and MobileNet in visual detection, and the growing use of lightweight audio-based models such as BirdNET, MFCC-based CNNs, and TinyML frameworks for microcontroller deployment. Multi-sensor fusion is proposed to improve detection accuracy in diverse environments. Repellence strategies include sound-based deterrents, visual deterrents, predator-mimicking visuals, and adaptive AI-integrated systems. Deployment success depends on edge compatibility, power efficiency, and dataset quality. The limitations of current studies include species-specific detection challenges, data scarcity, environmental changes, and energy constraints. Future research should focus on tiny and lightweight AI models, standardised multi-modal datasets, and intelligent, behaviour-aware deterrence mechanisms suitable for precision agriculture and ecological monitoring. Full article
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24 pages, 3629 KiB  
Article
Chlorography or Chlorotyping from the Decomposition of Chlorophyll and Natural Pigments in Leaves and Flowers as a Natural Alternative for Photographic Development
by Andrea D. Larrea Solórzano, Iván P. Álvarez Lizano, Pablo R. Morales Fiallos, Carolina E. Maldonado Cherrez and Carlos S. Suárez Naranjo
J. Zool. Bot. Gard. 2025, 6(3), 41; https://doi.org/10.3390/jzbg6030041 - 7 Aug 2025
Abstract
This study explores the use of chlorography as a natural photographic developing technique that utilizes the decomposition of chlorophyll and other plant pigments through the action of sunlight. The developed images corresponded to previous research on changes in the iconography of the indigenous [...] Read more.
This study explores the use of chlorography as a natural photographic developing technique that utilizes the decomposition of chlorophyll and other plant pigments through the action of sunlight. The developed images corresponded to previous research on changes in the iconography of the indigenous Salasaka people. In this context, this experimental project on natural photography is oriented toward the conservation of the ancestral knowledge of this community and the understanding of the native flora of Ecuador. We investigated the application of the contact image transfer technique with positive transparencies on leaves and flowers of 30 different species that grow in the Ecuadorian highlands, including leaves of vascular plants, as well as rose petals. The results showed that the clarity and contrast of chlorography depended on the plant species and exposure time. It was observed that fruit-bearing species produced more visible images than the leaves of other plants and rose petals, with species from the Passifloraceae family proving particularly effective. We interpreted these findings within the framework of plant photophysical mechanisms, proposing an inverse relationship between development efficiency and species’ non-photochemical quenching (NPQ) capacity. Furthermore, we interpreted the findings in relation to the photobleaching of pigments and compared chlorography with other natural photographic processes such as anthotypes. Key factors influencing the process were identified, such as the type of leaf, the intensity and duration of light, and the hydration of the plant material. It is concluded that chlorography is a viable, non-toxic, and environmentally friendly photographic alternative with potential applications in art, education, and research, although it presents challenges in terms of image permanence and reproducibility. Full article
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16 pages, 2159 KiB  
Article
A Comparison of eDNA Metabarcoding and Microscopy Techniques to Analyze Algal Diversity in Lake Titicaca, Peru
by Maribel Baylón and Jorge L. Ramirez
Diversity 2025, 17(8), 560; https://doi.org/10.3390/d17080560 - 7 Aug 2025
Abstract
The monitoring of algal communities has traditionally relied on optical microscopy. However, this technique is time-consuming and requires significant expertise to accurately identify species. In recent years, molecular techniques such as environmental DNA (eDNA) metabarcoding have facilitated the identification of algal communities. This [...] Read more.
The monitoring of algal communities has traditionally relied on optical microscopy. However, this technique is time-consuming and requires significant expertise to accurately identify species. In recent years, molecular techniques such as environmental DNA (eDNA) metabarcoding have facilitated the identification of algal communities. This study aims to compare both approaches for assessing planktonic microalgal communities in three areas of Lake Titicaca, using inverted light microscopy and eDNA metabarcoding. We found that the taxonomic composition obtained using the two methods differs significantly for Bacillariophyta, Chlorophyta, Charophyta, and Cyanobacteria, although genus- and order-level richness was similar across both approaches. A pronounced shift in species composition between techniques was revealed, with few shared genera and a high proportion of unassigned sequences (>50%) for Bacillariophyta. While microscopy provided more accurate estimates of microalgal density, metabarcoding revealed greater diversity, particularly among nanoplanktonic microalgae from the phyla Cryptophyta, Ochrophyta, Haptophyta, and Rhodophyta. To improve the accuracy and complementarity of these methodologies, it is essential to expand regional reference databases and work toward standardizing both approaches, allowing them to be used synergistically rather than independently. Full article
(This article belongs to the Special Issue Diversity and Ecology of Freshwater Plankton)
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17 pages, 18446 KiB  
Article
Spatial Forecasting and Social Acceptance of Human-Wildlife Conflicts Involving Semi-Aquatic Species in Romania
by Alexandru Gridan, Claudiu Pașca, Georgeta Ionescu, George Sîrbu, Cezar Spătaru, Ovidiu Ionescu and Darius Hardalau
Diversity 2025, 17(8), 559; https://doi.org/10.3390/d17080559 - 7 Aug 2025
Abstract
Human-Wildlife conflict (HWC) presents a growing challenge for wildlife conservation, especially as species recover and reoccupy human-dominated landscapes, creating tensions between ecological goals and local livelihoods. Such conflicts are increasingly reported across Europe, including Romania, involving semi-aquatic species like the Eurasian beaver ( [...] Read more.
Human-Wildlife conflict (HWC) presents a growing challenge for wildlife conservation, especially as species recover and reoccupy human-dominated landscapes, creating tensions between ecological goals and local livelihoods. Such conflicts are increasingly reported across Europe, including Romania, involving semi-aquatic species like the Eurasian beaver (Castor fiber L.) and Eurasian otter (Lutra lutra L.). Enhancing coexistence with wildlife through the integration of conflict mapping, stakeholder engagement, and spatial analysis into conservation planning is therefore essential for ensuring the long-term protection of conflict species. A mixed-methods approach was used, including structured surveys among stakeholders, standardized damage report collection from institutions, and expert field assessments of species activity. The results indicate that while most respondents recognize the legal protection of both species, a minority have experienced direct conflict, primarily with beavers through flooding and crop damage. Tolerance varied markedly among demographic groups: researchers and environmental agency staff were most accepting, whereas farmers and fish farm owners were the least accepting; respondents with no personal damage experience and those with university or post-secondary education also displayed significantly higher acceptance toward both species. Institutional reports confirmed multiple beaver-related damage sites, and through field validation, conflict forecast zones with spatial clustering in Harghita, Brașov, Covasna, and Sibiu counties were developed. These findings underscore the importance of conflict forecasting maps, understanding the coexistence dynamics and drivers of acceptance, and the need to maintain high acceptance levels toward the studied species. The developed maps can serve as a basis for targeted interventions, helping to balance ecological benefits with socioeconomic concerns. Full article
(This article belongs to the Special Issue Restoring and Conserving Biodiversity: A Global Perspective)
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20 pages, 5610 KiB  
Article
The Gut Microbial Adaptation of Wild Goitered Gazelles Under Antibiotic Pressure in the Qaidam Basin
by Qing Zhao, Yiran Wang, Jingqing Ma and Wen Qin
Microorganisms 2025, 13(8), 1842; https://doi.org/10.3390/microorganisms13081842 - 7 Aug 2025
Abstract
Gut microbiota plays a vital role in host resilience but may be disrupted under environmental antibiotic pressure. The goitered gazelle (Gazella subgutturosa), a keystone ungulate in the Qaidam Basin, is crucial for ecosystem stability. We aimed to investigate how this species [...] Read more.
Gut microbiota plays a vital role in host resilience but may be disrupted under environmental antibiotic pressure. The goitered gazelle (Gazella subgutturosa), a keystone ungulate in the Qaidam Basin, is crucial for ecosystem stability. We aimed to investigate how this species responds to antibiotic pressure through gut microbial adaptation. Using 16S rRNA sequencing and weighted gene co-expression network analysis (WGCNA) on fecal and soil samples from six regions, we identified 18 microbial modules, of which three were strongly associated with antibiotics (|r| ≥ 0.75, p < 0.05). Gut microbial α-diversity was lowest in the antibiotic-rich, vegetation-poor TGL region and highest in XRH, where diverse vegetation appeared to buffer antibiotic impact. Antibiotic pressure can reshape gut microbial communities, exerting both adaptive benefits and adverse effects. High-quality habitats may alleviate the negative impacts of antibiotic pressure. Full article
(This article belongs to the Section Gut Microbiota)
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19 pages, 4925 KiB  
Article
Environmental Heterogeneity Drives Diversity Across Forest Strata in Hopea hainanensis Communities
by Shaocui He, Donghai Li, Xiaobo Yang, Dongling Qi, Naiyan Shang, Caiqun Liang, Rentong Liu and Chunyan Du
Diversity 2025, 17(8), 556; https://doi.org/10.3390/d17080556 - 7 Aug 2025
Abstract
Species and phylogenetic diversity play vital roles in sustaining the structure, function, and resilience of plant communities, particularly in tropical rainforests. However, the mechanisms according to which environmental filtering and competitive exclusion influence diversity across forest layers remain insufficiently understood. In this study, [...] Read more.
Species and phylogenetic diversity play vital roles in sustaining the structure, function, and resilience of plant communities, particularly in tropical rainforests. However, the mechanisms according to which environmental filtering and competitive exclusion influence diversity across forest layers remain insufficiently understood. In this study, we investigated the species and phylogenetic diversity patterns in two representative tropical rainforest sites—Bawangling and Jianfengling—within Hainan Tropical Rainforest National Park, China, focusing on communities associated with the endangered species Hopea hainanensis. We employed a one-way ANOVA and Pearson’s correlation analyses to examine the distribution characteristics and interrelationships among diversity indices and used Mantel tests to assess the correlations with environmental variables. Our results revealed that the plant community in Jianfengling exhibited a significantly higher species richness at the family, genus, and species levels (a total of 288 plant species have been recorded, belonging to 82 families and 183 genera) compared to that in Bawangling (a total of 212 plant species, belonging to 75 families and 162 genera). H. hainanensis held the highest importance value in the middle tree layer across both sites (IV(BWL) = 12.44; IV(JFL) = 5.73), while dominant species varied notably among other forest layers, indicating strong habitat specificity. Diversity indices, including the Simpson index, the Shannon–Wiener index, and Pielou’s evenness, were significantly higher in the large shrub layer of Jianfengling, whereas Bawangling showed a relatively higher Shannon–Wiener index in the middle shrub layer. Phylogenetic diversity (PD) and the phylogenetic structure indices (NRI and NTI) displayed distinct vertical stratification patterns between sites. Furthermore, the PD in Bawangling’s large shrub layer was positively correlated with total phosphorus in the soil, while community evenness was influenced by soil organic carbon and total nitrogen. In Jianfengling, species richness was significantly associated with soil bulk density, altitude, and pH. These findings enhance our understanding of the ecological and evolutionary processes shaping biodiversity in tropical rainforests and highlight the importance of incorporating both species and phylogenetic metrics into the conservation strategies for endangered species such as Hopea hainanensis. Full article
(This article belongs to the Special Issue Biodiversity Conservation Planning and Assessment—2nd Edition)
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17 pages, 2943 KiB  
Article
Overview of a Keystone Small Pelagic Fish in the North-Western Black Sea: Biometry, Age and Stock Status of Horse Mackerel Trachurus mediterraneus (Steindachner, 1868)
by Cătălin Păun, Aurelia Țoțoiu, George Țiganov, Mădălina Galațchi, Magda Nenciu and Victor Niță
Fishes 2025, 10(8), 390; https://doi.org/10.3390/fishes10080390 - 7 Aug 2025
Abstract
As a semi-pelagic fish with commercial value, Mediterranean horse mackerel, Trachurus mediterraneus (Steindachner, 1868), is highly important both for the ecosystem, as a link between trophic levels, and for fisheries and local livelihoods. This study investigates the T. mediterraneus stock along the Romanian [...] Read more.
As a semi-pelagic fish with commercial value, Mediterranean horse mackerel, Trachurus mediterraneus (Steindachner, 1868), is highly important both for the ecosystem, as a link between trophic levels, and for fisheries and local livelihoods. This study investigates the T. mediterraneus stock along the Romanian coast for more than 10 years (2014–2024), reporting the following data on its bio-ecological characteristics and stock status: size, age, sex ratio, and estimated biomass. Horse mackerel at the Romanian coast revealed an initially slower growth rate followed by acceleration in later years, which may reflect local ecological influences such as resource availability, environmental conditions, or selective pressure. The spatial distribution of the species along the Romanian shelf indicates a clear pattern of coastal aggregation, highlighting the need for targeted and precautionary fisheries management measures, aiming to ensure a sustainable stock. Full article
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16 pages, 1481 KiB  
Article
Effects of Underwater Noise Exposure on Early Development in Zebrafish
by Tong Zhou, Yuchi Duan, Ya Li, Wei Yang and Qiliang Chen
Animals 2025, 15(15), 2310; https://doi.org/10.3390/ani15152310 - 7 Aug 2025
Abstract
Anthropogenic noise pollution is a significant global environmental issue that adversely affects the behavior, physiology, and auditory functions of aquatic species. However, studies on the effects of underwater noise on early developmental stages of fish remain scarce, particularly regarding the differential impacts of [...] Read more.
Anthropogenic noise pollution is a significant global environmental issue that adversely affects the behavior, physiology, and auditory functions of aquatic species. However, studies on the effects of underwater noise on early developmental stages of fish remain scarce, particularly regarding the differential impacts of daytime versus nighttime noise exposure. In this study, zebrafish (Danio rerio) embryos were exposed to control group (no additional noise), daytime noise (100–1000 Hz, 130 dB, from 08:00 to 20:00) or nighttime noise (100–1000 Hz, 130 dB, from 20:00 to 08:00) for 5 days, and their embryonic development and oxidative stress levels were analyzed. Compared to the control group, the results indicated that exposure to both daytime and nighttime noise led to delays in embryo hatching time and a significant decrease in larval heart rate. Notably, exposure to nighttime noise significantly increased the larval deformity rate. Noise exposure, particularly at night, elevated the activities of catalase (CAT) and glutathione peroxidase (GPX), as well as the concentration of malondialdehyde (MDA), accompanied by upregulation of antioxidant-related gene expression levels. Nighttime noise exposure significantly increased the abnormality rate of otolith development in larvae and markedly downregulated the expression levels of otop1 related to otolith development regulation, while daytime noise exposure only induced a slight increase in the otolith abnormality rate. After noise exposure, the number of lateral neuromasts in larvae decreased slightly, yet genes (slc17a8 and capgb) related to hair cell development were significantly upregulated. Overall, this study demonstrates that both daytime and nighttime noise can induce oxidative stress and impair embryonic development of zebrafish, with nighttime noise causing more severe damage. Full article
(This article belongs to the Section Animal Physiology)
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18 pages, 865 KiB  
Review
Proteomics-Based Approaches to Decipher the Molecular Strategies of Botrytis cinerea: A Review
by Olivier B. N. Coste, Almudena Escobar-Niño and Francisco Javier Fernández-Acero
J. Fungi 2025, 11(8), 584; https://doi.org/10.3390/jof11080584 - 6 Aug 2025
Abstract
Botrytis cinerea is a highly versatile pathogenic fungus, causing significant damage across a wide range of plant species. A central focus of this review is the recent advances made through proteomics, an advanced molecular tool, in understanding the mechanisms of B. cinerea infection. [...] Read more.
Botrytis cinerea is a highly versatile pathogenic fungus, causing significant damage across a wide range of plant species. A central focus of this review is the recent advances made through proteomics, an advanced molecular tool, in understanding the mechanisms of B. cinerea infection. Recent advances in mass spectrometry-based proteomics—including LC-MS/MS, iTRAQ, MALDI-TOF, and surface shaving—have enabled the in-depth characterization of B. cinerea subproteomes such as the secretome, surfactome, phosphoproteome, and extracellular vesicles, revealing condition-specific pathogenic mechanisms. Notably, in under a decade, the proportion of predicted proteins experimentally identified has increased from 10% to 52%, reflecting the rapid progress in proteomic capabilities. We explore how proteomic studies have significantly enhanced our knowledge of the fungus secretome and the role of extracellular vesicles (EVs), which play key roles in pathogenesis, by identifying secreted proteins—such as pH-responsive elements—that may serve as biomarkers and therapeutic targets. These technologies have also uncovered fine regulatory mechanisms across multiple levels of the fungal proteome, including post-translational modifications (PTMs), the phosphomembranome, and the surfactome, providing a more integrated view of its infection strategy. Moreover, proteomic approaches have contributed to a better understanding of host–pathogen interactions, including aspects of the plant’s defensive responses. Furthermore, this review discusses how proteomic data have helped to identify metabolic pathways affected by novel, more environmentally friendly antifungal compounds. A further update on the advances achieved in the field of proteomics discovery for the organism under consideration is provided in this paper, along with a perspective on emerging tools and future developments expected to accelerate research and improve targeted intervention strategies. Full article
(This article belongs to the Special Issue Plant Pathogenic Sclerotiniaceae)
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10 pages, 1663 KiB  
Article
First Detection and Molecular Identification of Rhabditis (Rhabditella) axei from the Chinese Red Panda (Ailurus styani)
by Chanjuan Yue, Wanjing Yang, Dunwu Qi, Mei Yang, James Edward Ayala, Yanshan Zhou, Chao Chen, Xiaoyan Su, Rong Hou and Songrui Liu
Pathogens 2025, 14(8), 783; https://doi.org/10.3390/pathogens14080783 - 6 Aug 2025
Abstract
Rhabditis (Rhabditella) axei is a predominantly free-living nematode commonly found in sewage systems and decomposing organic matter. While primarily saprophytic, it has been documented as an opportunistic pathogen in human urinary and gastrointestinal tracts. The Chinese red panda (Ailurus styani [...] Read more.
Rhabditis (Rhabditella) axei is a predominantly free-living nematode commonly found in sewage systems and decomposing organic matter. While primarily saprophytic, it has been documented as an opportunistic pathogen in human urinary and gastrointestinal tracts. The Chinese red panda (Ailurus styani), a rare and protected species in China, has not previously been reported as a host for Rhabditis (Rhabditella) spp. infections. This study reports the first documented occurrence of R. axei in red panda feces, unambiguously confirmed through integrative taxonomic approaches combining morphological and molecular analyses. The nematodes exhibited key morphological features consistent with R. axei, including a cylindrical rhabditiform esophagus, sexually dimorphic tail structures, and diagnostic spicule morphology. Molecular analysis based on 18S-ITS-28S rDNA sequencing confirmed their identity, showing >99% sequence similarity to R. axei reference strains (GenBank: PP135624.1, PP135622.1). Phylogenetic reconstruction using 18S rDNA and ITS rDNA sequences placed the isolate within a well-supported R. axei clade, clearly distinguishing it from related species such as R. blumi and R. brassicae. The findings demonstrate the ecological plasticity of R. axei as a facultative parasite capable of infecting non-traditional hosts and further highlight potential zoonotic risks associated with environmental exposure in captive wildlife populations. Our results emphasize the indispensable role of molecular diagnostics in accurately distinguishing morphologically similar nematodes within the Rhabditidae family, while providing essential baseline data for health monitoring in both in situ and ex situ conservation programs for this endangered species. Full article
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24 pages, 3149 KiB  
Article
Evaluation of Aggregate Oral Fluid Sampling for Early Detection of African Swine Fever Virus Infection
by Bonto Faburay, Kathleen O’Hara, Marta Remmenga, Theophilus Odoom, Sherry Johnson, William Tasiame, Matilda Ayim-Akonor, Benita Anderson, Kingsley Kwabena Amoako, Diane Holder, Wu Ping, Michelle Zajac, Vivian O’Donnell, Lizhe Xu, Robin Holland, Corrie Brown, Randall Levings and Suelee Robbe-Austerman
Viruses 2025, 17(8), 1089; https://doi.org/10.3390/v17081089 - 6 Aug 2025
Abstract
African swine fever (ASF) needs to be controlled, and prevention of the spread of African swine fever virus (ASFV) is dependent on enhanced surveillance and early disease detection. Commercial swine operations, especially in North America, Europe, and Asia, are characterized by comparatively large [...] Read more.
African swine fever (ASF) needs to be controlled, and prevention of the spread of African swine fever virus (ASFV) is dependent on enhanced surveillance and early disease detection. Commercial swine operations, especially in North America, Europe, and Asia, are characterized by comparatively large numbers of pigs, and sampling individual pigs, which represents the main strategy for current ASF surveillance, can be both costly and labor intensive. A study performed in Ghana was designed to estimate the diagnostic sensitivity of pen-based aggregate oral fluid testing for ASFV in infected pigs in a pen of 30 animals and to evaluate its utility as a tool to support surveillance of ASF in the US. This study was performed in three phases: (i) virus (Ghana ASFV24) amplification in a target host species to generate the challenge inoculum; (ii) titration of the inoculum (10% spleen homogenate) in target host species to determine the minimum dose inducing acute ASF in pigs with survival up to 5–6 days post-inoculation (dpi); and (iii) the main study, involving 186 pigs, consisting of 6 replicates of 30 pigs per pen and one seeder pig inoculated with wildtype ASFV (highly virulent genotype II) per pen. Daily sampling of aggregate oral fluids, uncoagulated blood, oropharyngeal swabs, fecal and water nipple swabs, and recording of rectal temperatures and clinical observations was carried out. The seeder pigs were each inoculated intramuscularly with 0.5 mL of the 10% spleen homogenate, which induced the desired clinical course of ASF in the pigs, with survival of up to 6 dpi. ASFV DNA was detected in the seeder pigs as early as 1 dpi and 2 dpi in the blood and oropharyngeal swabs, respectively. Transmission of ASFV from the seeder pigs to the contact pig population was detected via positive amplification of ASFV DNA in aggregate oral fluid samples at 3 days post-contact (dpc) in 4 out of 6 pens, and in all 6 pens, at 4 dpc. Testing of oropharyngeal swabs and blood samples from individual pigs revealed a variable number of ASFV-positive pigs between 3 and 5 dpc, with detection of 100% positivity between 6 and 18 dpc, the study endpoint. These findings demonstrate the potential utility of aggregate oral fluid sampling for sensitive and early detection of ASFV incursion into naïve swine herds. It also demonstrates that testing of environmental samples from the premises could further enhance overall ASF early detection and surveillance strategies. Full article
(This article belongs to the Collection African Swine Fever Virus (ASFV))
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15 pages, 1805 KiB  
Article
Indoor Application of Coupled FLOCponics System with Caipira Lettuce (Lactuca sativa) Affects the Growth Performance and Water Characteristics of Far Eastern Catfish (Silurus asotus) and Tropical Eel (Anguilla bicolor)
by Jun Seong Park, Hae Seung Jeong, Jeong-ho Lee and Ju-ae Hwang
Animals 2025, 15(15), 2305; https://doi.org/10.3390/ani15152305 - 6 Aug 2025
Abstract
In this study, we sought to improve the productivity of Far Eastern catfish (Silurus asotus) and tropical eel (Anguilla bicolor), which are high-value fish species in the Republic of Korea, as well as that of associated crops by applying [...] Read more.
In this study, we sought to improve the productivity of Far Eastern catfish (Silurus asotus) and tropical eel (Anguilla bicolor), which are high-value fish species in the Republic of Korea, as well as that of associated crops by applying biofloc technology (BFT)-based aquaponics systems. The following three systems were used: the flow-through system (FTS), BFT, and BFT aquaponics system (BAPs). Caipira lettuce (Lactuca sativa) was utilized and hydroponics (HP) was implemented to compare crop productivity. After 42 days of treatment, the BAPs and BFT systems improved fish productivity, with weight gain rates of 134.47 ± 1.80% in BAPs-cat, 130.38 ± 0.95% in BFT, and 114.21 ± 6.62% in FTS for S. asotus, and 70.61 ± 3.26% in BAPs-eel, 62.37 ± 7.04% in BFT, and 47.83 ± 1.09% in FTS for A. bicolor. During the experiment, the total ammonia nitrogen and NO2-N concentrations were stable in all plots. In the case of NO3-N, BFT showed an increasing tendency while both BAPs showed a decrease compared with that of the BFT. BAPs-cat (total weight: 224.1 ± 6.37 g) and HP (220.3 ± 7.17 g) resulted in similar growth. However, in BAPs-eel was 187.7 ± 3.46 g due to root degradation. Water content analysis showed that BAPs-cat and BAPs-eel contained sufficient K, Ca, P, and S, which are important for crop growth. Overall, the effect of BAPs on fish growth was higher than that of FTS. This study reveals that integrating BFT with aquaponics improves productivity for high-value fish and associated crops while maintaining stable water quality. This method offers sustainable, efficient production, reduces environmental impact, and provides insights for future research in sustainable aquaculture practices. Full article
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