Search Results (881)

Endophytes are diverse microorganisms inhabiting plant tissues that can promote plant growth, enhance stress tolerance, or suppress pathogens. However, the ecological roles of endophytes after host senescence and death remain poorly understood. This review examines how a subset of endophytes helps maintain ecosystem function in living plants, senescent tissues, litter, and associated microbial environments. Mechanisms of endophyte-mediated plant protection in living plants include pathogen inhibition, host regulation, nutrient acquisition, and abiotic stress tolerance. We also investigate post-senescence persistence and potential roles in litter decomposition and nutrient cycling via microbial and functional legacies, priority effects, extracellular enzyme activities, and community reassembly. Vertical transmission and horizontal dispersal can move microorganisms among stages, whereas host filtering acts after arrival to determine which microorganisms establish within host tissues. However, a full same-strain life-history loop has not been established. We propose an open, non-linear ecological continuum for selected endophytes that connects endophytic colonisation, saprotrophic persistence, and potential new-host establishment. In the future, longitudinal, strain-resolved, multi-omics, and synthetic-community studies will be conducted to verify the cross-stage connections and offer a microbial framework for plant protection, litter management, and ecological restoration. Full article

Agricultural intensification has weakened natural pest regulation by reducing habitat resources for natural enemies and limiting plant-mediated resistance. Here, we conducted field experiments during 2024–2025 to evaluate the combined effects of Cnidium monnieri field-margin planting and maize seeds coated with the endophytic fungal strains YC (Beauveria bassiana) and PL (Purpureocillium lilacinum) on predator conservation, pest suppression, and biological control in maize agroecosystems. Compared with natural grass margins, C. monnieri significantly increased predator abundance, species richness, and Shannon diversity, particularly of ladybirds, minute pirate bugs, and spiders (p < 0.05). Gut-content analysis detected C. monnieri DNA in ladybirds collected 10–40 m from field margins, confirming predator resource use and spillover into maize fields. Importantly, endophytic fungus-coated seeds did not reduce predator abundance or diversity. Moreover, combining C. monnieri with endophytic fungi enhanced pest suppression and achieved control efficacy comparable to imidacloprid (p > 0.05). These findings demonstrate that integrating functional plants with endophytic fungi simultaneously strengthens top-down biological control and endophyte-associated bottom-up pest suppression, providing an effective and environmentally sustainable strategy for pest management in maize. Full article

Marine fungi associated with sponges and brown algae are promising sources of pharmacologically active compounds. This study investigated the cytotoxic potential and metabolomic profiles of fungal strains isolated from the marine environment of Mauritius. Among the twenty extracts screened, the mycelium extracts were more cytotoxic than the broth extracts. Four extracts demonstrated the most potent activity: Aspergillus chevalieri (F2M), Aspergillus ochraceus (F25M) and Biatriospora sp. (F34M, F34B). The algal endophyte Aspergillus chevalieri (F2M) mycelium extract displayed an IC₅₀ of 14.27 ± 1.22 µg/mL after 24 h against HepG2 cells. The sponge-associated fungi Aspergillus ochraceus (F25M) showed promising cytotoxic activities against HepG2 cells (IC₅₀ of 8.775 ± 0.78 µg/mL) after 24 h of treatment, with a selectivity index of 2.27, and had the lowest IC₅₀ (2.49 ± 0.60 µg/mL after 24 h; 7.14 ± 3.14 µg/mL after 48 h) against FLO-1 cells, also reducing tumor spheroid growth and integrity during the first four hours. All four extracts increased the intracellular ROS production, but only the mycelium extract of A. chevalieri (F2M) significantly increased superoxide dismutase (SOD) and catalase (CAT) activity. Metabolomic profiling identified diverse compound classes, including alkaloids, terpenoids, amino acids, anthraquinones and coumarins. The findings revealed that the marine fungi from Mauritius are promising sources of cytotoxic metabolites that require purification and subsequent confirmation and mechanistic studies. Full article

Endophytic bacteria associated with medicinal plants represent a potential source of microorganisms with useful enzymatic and antagonistic properties. In this study, 14 bacterial isolates were recovered from the leaves, roots, flowers, and petioles of Inula helenium and screened for morphological, biochemical, and hydrolytic characteristics. Isolate IH-B3, which showed the most pronounced starch- and casein-hydrolysis zones during preliminary screening, was selected for further characterization. MALDI-TOF mass spectrometry assigned the isolate to Bacillus subtilis with an identification score of 2.26, and the strain was designated B. subtilis UzMU25. Its 1444 bp 16S rRNA gene sequence was deposited in GenBank under accession number PZ593820. The strain was catalase- and lecithinase-positive but gelatinase- and hemolysis-negative, and it grew at pH 6.5 and in the presence of horse bile under the qualitative assay conditions used. Hydrolysis-zone diameters ranged from 46 to 52 mm for amylase, 34 to 42 mm for protease, and 10 to 16 mm for lipase activity. In direct antagonism assays, UzMU25 inhibited all six bacterial and fungal test organisms, producing inhibition zones of 26–36 mm. Biofilm biomass varied with incubation time and reached its highest corrected OD₅₉₀ value at 12 h (0.780 ± 0.025). Antibiotic-disc testing showed a 10 mm inhibition zone for vancomycin, indicating reduced susceptibility under the applied conditions and requiring further investigation of its genetic basis and potential transferability. No mortality was observed during the preliminary acute oral study following administration of the tested preparation at doses up to 10,000 mg kg⁻¹, and no visible dermal or conjunctival irritation was detected. Overall, UzMU25 exhibited preliminary enzymatic, antagonistic, and biofilm-forming characteristics of biotechnological interest. However, whole-genome antimicrobial-resistance screening and more comprehensive phenotypic and toxicological evaluations are required before the strain can be recommended for probiotic or other practical applications. Full article

Background: Endophytic fungi are important sources of structurally diverse antimicrobial natural products, but their potential to yield antitubercular scaffolds remains insufficiently explored. This study aimed to uncover new decalin polyketides from the endophytic fungus, Trichoderma longicollum 17007, and to evaluate their biological activity. Methods: Feature-based molecular networking (FBMN) analysis of the ethyl acetate extract from rice-based cultures was performed using trichoharzin as a seed compound to guide targeted isolation. Structures were established by HRMS, 1D and 2D NMR spectroscopy, NOESY analysis, and quantum chemical ECD calculations. Cytotoxicity and activity against the avirulent Mycobacterium tuberculosis H37Ra strain were evaluated, and genome mining was performed to identify a candidate biosynthetic gene cluster. Results: Six new decalin polyketides, tandyukisins K–P (1–6), and two known analogues, trichoharzin (7) and tandyukisin J (8), were isolated. Compounds 1–6 are C1-O-acetylated analogues bearing a 3-methylpentenedioate-type acyl side chain. Comparative ¹³C NMR analysis revealed empirical features useful for assigning side-chain attachment site, double-bond position and geometry. Tandyukisins K (1) and P (6) showed moderate activity against the avirulent M. tuberculosis H37Ra strain, with a MIC value of 12.5 μg/mL. Conclusions: These findings expand the structural diversity of decalin polyketides and provide the first evidence of antitubercular activity by this compound family. Full article

Cowpea (Vigna unguiculata subsp. sesquipedalis, also known as yardlong bean) is an important winter horticultural crop in Hainan, and Fusarium wilt seriously threatens its yield and quality. To clarify the pathogen and screen antagonistic bacteria, surveys were conducted in 14 fields across Hainan’s major cowpea-growing areas. The causal agent was isolated, tested for pathogenicity, and identified using morphological and multigene molecular methods. Meanwhile, rhizosphere and endophytic bacteria from healthy plants were screened by dual culture, and candidate strains were phylogenetically analyzed using whole-genome sequencing (285 orthologous single-copy genes). Fusarium wilt occurred in all 14 fields (mean incidence 15.35%, range 3.20–76.40%). Of 44 fungal isolates, six were highly pathogenic and identified as Fusarium oxysporum. Twenty-two bacterial strains showed stable antagonism against F. oxysporum, with inhibition rates ranging from 42.62% to 68.47%. Phylogenetic analysis based on whole-genome sequences identified 15 Bacillus strains to the species level (12 B. velezensis, 2 B. subtilis, 1 B. tropicus), while the remaining seven strains belonged to Lysinibacillus (1), Pantoea (1), Klebsiella (1), Serratia (2), and Pseudomonas (2). Draft genome sequences of all 22 strains were obtained. This study provides a collection of biocontrol bacterial resources and genomic information for managing cowpea Fusarium wilt. Full article

This research focused on the plant growth-promoting properties of endophytic bacteria isolated from Morisonia scabrida, a tree adapted to heat stress. Sixteen bacterial strains were isolated; among them, S1R21 tolerated 50 °C; S1H21 inhibited the growth of Fusarium sp. FH at 25 and 30 °C; and S1R16 inhibited Alternaria sp. ATCC20084 and F. oxysporum CTLM12 at 25 and 30 °C. Regarding enzymatic activities, S1R21 exhibited amylase activity at 30 °C; S1T20 showed proteinase activity at 37 °C; S1T11 showed pectinase activity at 37 °C; S1R16 and S1R9 demonstrated lipase activity; and S1R20 showed CMCase activity at 30 °C. S1T1 solubilized tricalcium phosphate at 25 and 30 °C; S1H5 produced siderophores at 30 °C; and S1T11 produced IAA and fixed nitrogen at 30 and 37 °C. With respect to germination percentage of corn and alfalfa, the highest values were achieved with strain S1R21 at 30 and 37 °C. Seven strains were selected and identified by 16S rDNA analysis as Bacillus albus S1H21, Bacillus cereus S1R21, Lysinibacillus fusiformis S1R9, Enterobacter sp. (S1H5 and S1R8), Klebsiella sp. S1R16 and Stutzerimonas stutzeri S1T11. Most of these strains increased growth parameters of Zea mays and Medicago sativa, with Stutzerimonas stutzeri S1T11 standing out regarding high aerial and root length, as well as fresh and dry weight. This research study is one of the few studies on endophytic bacteria associated with the Morisonia scabrida tree. It demonstrates that its bacterial diversity could contribute to various biological roles, such as that of plant growth promoter under heat stress. Full article

The presence of false heartwood in the stems of Fagus sylvatica L. significantly reduces timber quality; to date, its physiological triggers remain understudied. Research on beech stands in the forests of the Bukovinian Pre-Carpathians (Ukraine) was aimed at identifying functional links between leaf structure, synthesis of polyphenols, microbial elicitors, and false heartwood formation. Using morphometric analysis, epifluorescence microscopy, and spectrophotometry, trees with false heartwood (FH morphotype) were compared with those without it, the healthy control (HC morphotype). Sequencing of the 16S rRNA gene identified the endophytic strain Bacillus halotolerans (BHFHB). The composition of its exopolysaccharides (EPS) was analyzed by gas chromatography. Trees with FH were identified as a distinct morphotype characterized by leaf blade thickness and increased flavonoid content in leaves. It was experimentally demonstrated that this morphotype is characterized by the capacity for flavonoid hypersynthesis. Treatment of leaves with ethephon or bacterial EPS resulted in a 20–30% increase in flavonoid content within four hours. The proactive response, combined with xeromorphic traits, indicates a state of systemic priming. FH formation in this morphotype is proposed to be considered as an individual adaptive strategy, where ethylene-dependent hypersynthesis of flavonoids provides antioxidant protection, biomechanical resistance, and metabolomic adaptation under extreme conditions of mountain ecosystems. Full article

Endophytic bacteria from medicinal plants are increasingly recognised as sources of antimicrobial metabolites. However, the endophytic bacterial community of Mitrephora heyneana remains poorly explored. In the present study, endophytic bacteria were isolated from the leaves of M. heyneana, collected from the Western Ghats of Tamil Nadu, India. Among seven isolates, the plant endophyte strain from leaf 6th strain (PEL6) was identified as Paenibacillus lactis through 16S rRNA gene sequencing. The ethyl acetate extract of PEL6 (EAE-PEL6) was subjected to gas chromatography–mass spectrometry (GC-MS) analysis, which putatively identified 32 metabolites based on GC-MS library matching, including pyrrolo [1,2-a] pyrazine-1,4-dione derivatives and triazole compounds as major constituents. The EAE-PEL6 demonstrated significant in vitro antibacterial activity against Staphylococcus aureus. In silico ADMET (absorption, distribution, metabolism, excretion, and toxicity), profiling predicted drug-likeness and pharmacokinetic properties of selected candidate compounds. Molecular docking suggested favourable binding of selected metabolites to S. aureus target proteins; however, these interactions require experimental validation. Density Functional Theory calculations indicated that CID 70504 had the lowest Highest Occupied Molecular Orbital (HOMO)–Lowest Unoccupied Molecular Orbital (LUMO) energy gap, reflecting higher electronic reactivity. Molecular electrostatic potential mapping further supported its enhanced binding propensity. Molecular dynamics simulations suggested structural stability, with Root Mean Square Deviation, Solvent Accessible Surface Area, radius of gyration, and hydrogen-bond analyses indicating stable interactions throughout the 100 ns trajectory. Overall, this study identifies P. lactis PEL6 as a promising endophytic source of anti-S. aureus metabolites and provides candidates for future purification, structural confirmation, and biological validation. Full article

Orchid root-associated fungal endophytes (ORAFEs) represent an important component of fungal biodiversity with potential applications in orchid conservation and sustainable production. ORAFEs were isolated from the roots of four orchid species in Veracruz, Mexico: Gongora galeata, Maxillaria densa, Maxillaria tenuifolia, and Maxillaria variabilis to investigate their diversity and plant-growth-promoting (PGP) properties. Taxonomic identification relied on morphological and molecular phylogenetic analyses using ITS, TEF1-α, β-tubulin (TUB2), and actin (ACT). Fifty-six isolates were grouped into 20 morphotypes representing 15 genera, including Aspergillus, Biscogniauxia, Chaetomium, Colletotrichum, Thelonectria, Diaporthe, Fusarium, Geotrichum, Hypoxylon, Lasiodiplodia, Mucor, Periconia, Pestalotiopsis, Trichoderma, Xylaria, and two isolates that may represent undescribed taxa requiring further polyphasic taxonomic investigation. Functional experiments indicated a wide range of PGP activities: ten strains solubilized phosphate, eight produced siderophores, twelve synthesized indole-3-acetic acid, fourteen produced pectinases, six fungi exhibited antibacterial activity against Bacillus subtilis, and five inhibited Staphylococcus aureus. Furthermore, Trichoderma atroviride TR1-T2 and Xylaria multiplex XY1-D42 showed antagonistic activity against Phytopythium vexans, characterized by a contact-dependent displacement effect. Five strains were chosen for further research as orchid bioinoculants based on their PGP and antagonistic traits: Chaetomium cochliodes CH1-V10, Mucor pseudolusitanicus MU2-T6, Thelonectria veuillotiana TH1-T3, Trichoderma atroviride TR1-T2, and Xylaria multiplex XY1-D42. These endophytes have the potential to improve in vitro propagation and facilitate ex vitro acclimatization of orchids, highlighting their importance in sustainable orchid production. Full article

Fusarium wilt, caused by the soil-borne fungus Fusarium oxysporum f. sp. lycopersici (Fol), is a devastating disease that severely constrains tomato production worldwide. In this study, an endophytic bacterium, designated ZN-S18, was isolated from healthy tomato stems and identified as Bacillus amyloliquefaciens based on phylogenetic analyses of the 16S rRNA and rpoB genes. Dual culture assays demonstrated that ZN-S18 exhibited strong antagonistic activity against Fol and significantly inhibited fungal mycelial growth. The cell-free culture filtrate of ZN-S18 markedly suppressed Fol spore germination and mycelial growth, and the inhibitory effect on spore germination was irreversible. LC-MS analyses confirmed that ZN-S18 produces the cyclic lipopeptides surfactin and iturin A. In planta assays further demonstrated that pretreatment with ZN-S18, its culture filtrate, or the combination of surfactin and iturin A significantly reduced Fusarium wilt in tomato seedlings. Moreover, the culture filtrate disrupted fungal cell wall integrity, as indicated by the increased sensitivity of Fol to Congo red stress. Notably, the combined application of surfactin and iturin A exhibited significantly stronger antifungal activity than either compound alone under Congo red-containing conditions, suggesting a synergistic effect on fungal cell wall integrity. Collectively, these findings indicate that the endophytic strain B. amyloliquefaciens ZN-S18 is a promising biocontrol agent against tomato Fusarium wilt, primarily through the synergistic action of surfactin and iturin A. This study provides an environmentally friendly alternative to chemical fungicides and establishes a foundation for future investigations into the molecular mechanisms underlying lipopeptide-mediated antagonism. Full article

The root parasitic weed Phelipanche aegyptiaca poses a serious threat to tomato production in arid regions of Northwest China, yet effective and environmentally friendly control measures remain limited. In this study, an endophytic bacterial strain G24 with strong inhibitory activity against P. aegyptiaca seed germination was isolated from healthy tomato tissues. In vitro germination assays showed that both the fermentation broth and cell-free supernatant of G24 completely inhibited seed germination even at 1000-fold dilution, indicating that the active metabolites are extracellularly produced or released. Pot experiments further demonstrated that G24 inoculation significantly reduced the number, fresh weight, and dry weight of parasitic broomrape nodules on tomato roots, with reductions of 69.4%, 89.0%, and 88.6%, respectively, compared with the control. Moreover, G24 significantly increased tomato stem diameter, indicating its intrinsic plant growth-promoting capacity. Although both sterile NB medium and G24 suspension increased whole-plant fresh weight, no statistically significant difference was observed between the two treatments (p > 0.05). The reduced leaf chlorophyll concentration per unit fresh weight in G24-treated tomatoes was a typical growth dilution effect and did not suppress overall plant performance, and no phytotoxicity was detected. Based on morphological, physiological–biochemical, and multilocus phylogenetic analyses (16S rDNA, gyrB, and rpoB), strain G24 was identified as Lelliottia nimipressuralis. As a native endophyte of tomato, L. nimipressuralis G24 exhibits excellent host compatibility, biocontrol efficacy, and growth-promoting activity, with no adverse effects on tomato development. This study expands the application potential of the genus Lelliottia in parasitic weed management and provides a novel microbial resource for the integrated and sustainable control of P. aegyptiaca. Full article

Microbial biotransformation of para-hydroxycinnamic acids (pHCAs) such as para-coumaric, caffeic, ferulic and sinapic acids into vinylphenols is catalyzed by phenolic acid decarboxylases (PADs), while reduction to their corresponding aldehydes and alcohols is mediated by carboxylic acid reductases (CARs) and alcohol dehydrogenases (ADHs), respectively. The present study systematically evaluated a diverse set of endophytic and basidiomycetes fungi as whole-cell biocatalysts for the transformation of pHCAs into their corresponding vinylphenols and/or aldehydes and alcohols. Twenty-three fungal strains were screened for their PAD, CAR and ADH activities. Based on ultra-high-performance liquid chromatography–diode array detector (UHPLC-DAD) analysis, fourteen strains were selected for preparative-scale biotransformations across all four substrates. Previous literature largely emphasizes enzyme activity or single substrates, seldom covering all four pHCAs. The strain Umbelopsis sp. JAR-T demonstrated promising biotransformation of para-coumaric acid and ferulic acid to 4-vinylphenol (28% isolated yield) and 4-vinylguaiacol (40% isolated yield), respectively, with minimal by-product formation. The results highlight endophytic fungi as largely untapped and versatile biocatalysts for pHCA biotransformation and establish whole-cell fungal systems as robust, non-recombinant alternatives to engineered platforms. This integrated screening-to-preparative workflow provides a scalable framework for the production of value-added compounds with potential applications in the food, cosmetic and pharmaceutical industries. Full article

Fusarium wilt of Phalaenopsis spp., caused by Fusarium species, is a major soil-borne disease that severely threatens the yield and ornamental quality of Phalaenopsis. Endophytic fungi can serve as natural biocontrol agents against soil-borne pathogens and have potential applications in biological control. In this study, a pathogenic isolate, HT-1, was obtained from Fusarium-wilted Phalaenopsis plants, and its pathogenicity was confirmed through inoculation assays on detached leaves and intact plants. Morphological observations, together with internal transcribed spacer (ITS) and translation elongation factor 1-α (TEF-1α) sequence analyses, identified HT-1 as Fusarium proliferatum. Seven endophytic fungi with strong antagonism against F. proliferatum were screened using a dual-culture assay. All seven isolates consistently inhibited five representative plant pathogens in vitro, showing broad-spectrum and promising biocontrol potential. Detached leaf inoculation assays showed that both Trichoderma virens and Trichoderma asperellum significantly reduced lesion area and disease severity caused by F. proliferatum, indicating potential application in disease management. In summary, this study identified seven endophytic fungi from Phalaenopsis with broad-spectrum antagonistic potential against multiple plant pathogenic fungi. Meanwhile, the protective effects of T. virens and T. asperellum against F. proliferatum were preliminarily evaluated using detached leaves. These findings provide theoretical reference and fungal resources for screening candidate biocontrol strains against Phalaenopsis Fusarium wilt and related plant diseases, and lay a foundation for future studies on biocontrol mechanisms, whole-plant efficacy verification, and practical application. Full article

Background/Objectives: Wheat root and crown rot, caused by Fusarium pseudograminearum, Fusarium graminearum, and Bipolaris sorokiniana, are devastating soil-borne diseases that cause substantial yield losses worldwide. Endophytic fungi are promising sources of bioactive metabolites for agricultural applications. This study aimed to isolate and characterize an endophytic fungus with antifungal activity against major wheat pathogens, identify its active compound, and investigate the underlying transcriptional response. Methods: An endophytic strain Y2 was isolated from Hedyotis diffusa leaves and identified through morphological and phylogenetic analysis based on TEF-1α and RPB2 sequences. Pathogenicity of strain Y2 was evaluated on wheat stem bases. The bioactive compound was purified by HPLC and identified by HR-ESI-MS and NMR. Antifungal activity was assessed using dual-culture and microbroth dilution assays. Transcriptomic analysis (RNA-seq) was performed on F. pseudograminearum treated with equisetin, with qRT-PCR validation of seven representative differentially expressed genes. Results: Strain Y2 was identified as Fusarium incarnatum or a closely related member of the F. incarnatum–equiseti species complex (FIESC) and confirmed to be non-pathogenic to wheat. The purified bioactive compound was characterized as equisetin, which exhibited significant antifungal activity with MIC values of 16, 32, and 64 μg/mL against F. pseudograminearum, B. sorokiniana, and F. graminearum, respectively. Transcriptomic analysis revealed that equisetin treatment induced a polarized transcriptional response in F. pseudograminearum, characterized by strong upregulation of ribosome and translation-related genes and widespread downregulation of other metabolic pathways, particularly nitrogen metabolism. qRT-PCR validation of seven representative genes confirmed the reliability of the RNA-seq data. Conclusions: Our findings demonstrate that equisetin is the active antifungal metabolite produced by F. incarnatum Y2, with potent in vitro activity against major wheat root and crown rot pathogens. The transcriptomic data provide insights into the potential mechanism of action, while the non-pathogenic nature of strain Y2 supports its biosafety. Although these results highlight equisetin as a promising lead compound for antifungal development, further in planta efficacy and safety studies are required before it can be considered for practical biocontrol. Full article