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Keywords = ecological validity

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18 pages, 4841 KiB  
Article
Evaluation and Application of the MaxEnt Model to Quantify L. nanum Habitat Distribution Under Current and Future Climate Conditions
by Fayi Li, Liangyu Lv, Shancun Bao, Zongcheng Cai, Shouquan Fu and Jianjun Shi
Agronomy 2025, 15(8), 1869; https://doi.org/10.3390/agronomy15081869 (registering DOI) - 1 Aug 2025
Abstract
Understanding alpine plants’ survival and reproduction is crucial for their conservation in climate change. Based on 423 valid distribution points, this study utilizes the MaxEnt model to predict the potential habitat and distribution dynamics of Leontopodium nanum under both current and future climate [...] Read more.
Understanding alpine plants’ survival and reproduction is crucial for their conservation in climate change. Based on 423 valid distribution points, this study utilizes the MaxEnt model to predict the potential habitat and distribution dynamics of Leontopodium nanum under both current and future climate scenarios, while clarifying the key factors that influence its distribution. The primary ecological drivers of distribution are altitude (2886.08 m–5576.14 m) and the mean temperature of the driest quarter (−6.60–1.55 °C). Currently, the suitable habitat area is approximately 520.28 × 104 km2, covering about 3.5% of the global land area, concentrated mainly in the Tibetan Plateau, with smaller regions across East and South Asia. Under future climate scenarios, low-emission (SSP126), suitable areas are projected to expand during the 2050s and 2070s. High-emission (SSP585), suitable areas may decrease by 50%, with a 66.07% reduction in highly suitable areas by the 2070s. The greatest losses are expected in the south-eastern Tibetan Plateau. Regarding dynamic habitat changes, by the 2050s, newly suitable areas will account for 51.09% of the current habitat, while 68.26% of existing habitat will become unsuitable. By the 2070s, newly suitable areas will rise to 71.86% of the current total, but the loss of existing areas will exceed these gains, particularly under the high-emission scenario. The centroid of suitable habitats is expected to shift northward, with migration distances ranging from 23.94 km to 342.42 km. The most significant shift is anticipated under the SSP126 scenario by the 2070s. This study offers valuable insights into the distribution dynamics of L. nanum and other alpine species under the context of climate change. From a conservation perspective, it is recommended to prioritize the protection and restoration of vegetation in key habitat patches or potential migration corridors, restrict overgrazing and infrastructure development, and maintain genetic diversity and dispersal capacity through assisted migration and population genetic monitoring when necessary. These measures aim to provide a robust scientific foundation for the comprehensive conservation and sustainable management of the grassland ecosystem on the Qinghai–Tibet Plateau. Full article
(This article belongs to the Section Grassland and Pasture Science)
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16 pages, 340 KiB  
Review
Methodological Standards for Conducting High-Quality Systematic Reviews
by Alessandro De Cassai, Burhan Dost, Serkan Tulgar and Annalisa Boscolo
Biology 2025, 14(8), 973; https://doi.org/10.3390/biology14080973 (registering DOI) - 1 Aug 2025
Abstract
Systematic reviews are a cornerstone of evidence-based research, providing comprehensive summaries of existing studies to answer specific research questions. This article offers a detailed guide to conducting high-quality systematic reviews in biology, health and social sciences. It outlines key steps, including developing and [...] Read more.
Systematic reviews are a cornerstone of evidence-based research, providing comprehensive summaries of existing studies to answer specific research questions. This article offers a detailed guide to conducting high-quality systematic reviews in biology, health and social sciences. It outlines key steps, including developing and registering a protocol, designing comprehensive search strategies, and selecting studies through a screening process. The article emphasizes the importance of accurate data extraction and the use of validated tools to assess the risk of bias across different study designs. Both meta-analysis (quantitative approach) and narrative synthesis (qualitative approach) are discussed in detail. The guide also highlights the use of frameworks, such as GRADE, to assess the certainty of evidence and provides recommendations for clear and transparent reporting in line with the PRISMA 2020 guidelines. This paper aims to adapt and translate evidence-based review principles, commonly applied in clinical research, into the context of biological sciences. By highlighting domain-specific methodologies, challenges, and resources, we provide tailored guidance for researchers in ecology, molecular biology, evolutionary biology, and related fields in order to conduct transparent and reproducible evidence syntheses. Full article
(This article belongs to the Section Theoretical Biology and Biomathematics)
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26 pages, 1790 KiB  
Article
A Hybrid Deep Learning Model for Aromatic and Medicinal Plant Species Classification Using a Curated Leaf Image Dataset
by Shareena E. M., D. Abraham Chandy, Shemi P. M. and Alwin Poulose
AgriEngineering 2025, 7(8), 243; https://doi.org/10.3390/agriengineering7080243 - 1 Aug 2025
Abstract
In the era of smart agriculture, accurate identification of plant species is critical for effective crop management, biodiversity monitoring, and the sustainable use of medicinal resources. However, existing deep learning approaches often underperform when applied to fine-grained plant classification tasks due to the [...] Read more.
In the era of smart agriculture, accurate identification of plant species is critical for effective crop management, biodiversity monitoring, and the sustainable use of medicinal resources. However, existing deep learning approaches often underperform when applied to fine-grained plant classification tasks due to the lack of domain-specific, high-quality datasets and the limited representational capacity of traditional architectures. This study addresses these challenges by introducing a novel, well-curated leaf image dataset consisting of 39 classes of medicinal and aromatic plants collected from the Aromatic and Medicinal Plant Research Station in Odakkali, Kerala, India. To overcome performance bottlenecks observed with a baseline Convolutional Neural Network (CNN) that achieved only 44.94% accuracy, we progressively enhanced model performance through a series of architectural innovations. These included the use of a pre-trained VGG16 network, data augmentation techniques, and fine-tuning of deeper convolutional layers, followed by the integration of Squeeze-and-Excitation (SE) attention blocks. Ultimately, we propose a hybrid deep learning architecture that combines VGG16 with Batch Normalization, Gated Recurrent Units (GRUs), Transformer modules, and Dilated Convolutions. This final model achieved a peak validation accuracy of 95.24%, significantly outperforming several baseline models, such as custom CNN (44.94%), VGG-19 (59.49%), VGG-16 before augmentation (71.52%), Xception (85.44%), Inception v3 (87.97%), VGG-16 after data augumentation (89.24%), VGG-16 after fine-tuning (90.51%), MobileNetV2 (93.67), and VGG16 with SE block (94.94%). These results demonstrate superior capability in capturing both local textures and global morphological features. The proposed solution not only advances the state of the art in plant classification but also contributes a valuable dataset to the research community. Its real-world applicability spans field-based plant identification, biodiversity conservation, and precision agriculture, offering a scalable tool for automated plant recognition in complex ecological and agricultural environments. Full article
(This article belongs to the Special Issue Implementation of Artificial Intelligence in Agriculture)
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16 pages, 489 KiB  
Review
A Scoping Review of Psychometric Instruments Measuring Teachers’ Resilience
by Athena Daniilidou and Christos Pezirkianidis
Encyclopedia 2025, 5(3), 109; https://doi.org/10.3390/encyclopedia5030109 - 31 Jul 2025
Abstract
Over the past two decades, rising concerns about teacher stress and professional sustainability have fueled the development of instruments assessing teacher resilience. This review aims to map the existing resilience assessment tools specifically designed for educators, evaluating their theoretical frameworks, psychometric soundness, and [...] Read more.
Over the past two decades, rising concerns about teacher stress and professional sustainability have fueled the development of instruments assessing teacher resilience. This review aims to map the existing resilience assessment tools specifically designed for educators, evaluating their theoretical frameworks, psychometric soundness, and contextual relevance. Twelve instruments were analyzed through an extensive literature review of peer-reviewed studies published over the past twenty years, including general, preservice, EFL, and teacher-specific scales for special education. Findings reveal a progression from early instruments emphasizing intrapersonal traits to current tools incorporating ecological and contextual dimensions. While several scales demonstrate satisfactory reliability and cross-cultural applicability, many still suffer from conceptual limitations, insufficient cultural adaptation, or marginal psychometric robustness. This review concludes that despite significant advances, future research must prioritize culturally grounded frameworks, broader subgroup validation, and advanced psychometric methodologies to ensure accurate, inclusive, and practical assessments of teacher resilience across diverse educational settings. Full article
(This article belongs to the Section Social Sciences)
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22 pages, 6878 KiB  
Article
Separate Versus Unified Ecological Networks: Validating a Dual Framework for Biodiversity Conservation in Anthropogenically Disturbed Freshwater–Terrestrial Ecosystems
by Tianyi Cai, Qie Shi, Tianle Luo, Yuechun Zheng, Xiaoming Shen and Yuting Xie
Land 2025, 14(8), 1562; https://doi.org/10.3390/land14081562 - 30 Jul 2025
Viewed by 36
Abstract
Freshwater ecosystems—home to roughly 10% of known species—are losing biodiversity to river-morphology alteration, hydraulic infrastructure, and pollution, yet most ecological network (EN) studies focus on terrestrial systems and overlook hydrological connectivity under human disturbance. To address this, we devised and tested a dual [...] Read more.
Freshwater ecosystems—home to roughly 10% of known species—are losing biodiversity to river-morphology alteration, hydraulic infrastructure, and pollution, yet most ecological network (EN) studies focus on terrestrial systems and overlook hydrological connectivity under human disturbance. To address this, we devised and tested a dual EN framework in the Yangtze River Delta’s Ecological Green Integration Demonstration Zone, constructing freshwater and terrestrial networks independently before merging them. Using InVEST Habitat Quality, MSPA, the MCR model, and Linkage Mapper, we delineated sources and corridors: freshwater sources combined NDWI-InVEST indicators with a modified, sluice-weighted resistance surface, producing 78 patches (mean 348.7 ha) clustered around major lakes and 456.4 km of corridors (42.50% primary). Terrestrial sources used NDVI-InVEST with a conventional resistance surface, yielding 100 smaller patches (mean 121.6 ha) dispersed across woodlands and agricultural belts and 658.8 km of corridors (36.45% primary). Unified models typically favor large sources from dominant ecosystems while overlooking small, high-value patches in non-dominant systems, generating corridors that span both freshwater and terrestrial habitats and mismatch species migration patterns. Our dual framework better reflects species migration characteristics, accurately captures dispersal paths, and successfully integrates key agroforestry-complex patches that unified models miss, providing a practical tool for biodiversity protection in disturbed freshwater–terrestrial landscapes. Full article
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15 pages, 2006 KiB  
Article
Hydrological Responses to Territorial Spatial Change in the Xitiaoxi River Basin: A Simulation Study Using the SWAT Model Driven by China Meteorological Assimilation Driving Datasets
by Dongyan Kong, Huiguang Chen and Kongsen Wu
Water 2025, 17(15), 2267; https://doi.org/10.3390/w17152267 - 30 Jul 2025
Viewed by 93
Abstract
The use of the Soil and Water Assessment Tool (SWAT) model driven by China Meteorological Assimilation Driving Datasets (CMADS) for runoff simulation research is of great significance for regional flood prevention and control. Therefore, from the perspective of production-living-ecological space, this article combined [...] Read more.
The use of the Soil and Water Assessment Tool (SWAT) model driven by China Meteorological Assimilation Driving Datasets (CMADS) for runoff simulation research is of great significance for regional flood prevention and control. Therefore, from the perspective of production-living-ecological space, this article combined multi-source data such as DEM, soil texture and land use type, in order to construct scenarios of territorial spatial change (TSC) across distinct periods. Based on the CMADS-L40 data and the SWAT model, it simulated the runoff dynamics in the Xitiaoxi River Basin, and analyzed the hydrological response characteristics under different TSCs. The results showed that The SWAT model, driven by CMADS-L40 data, demonstrated robust performance in monthly runoff simulation. The coefficient of determination (R2), Nash–Sutcliffe efficiency coefficient (NSE), and the absolute value of percentage bias (|PBIAS|) during the calibration and validation period all met the accuracy requirements of the model, which validated the applicability of CMADS-L40 data and the SWAT model for runoff simulation at the watershed scale. Changes in territorial spatial patterns are closely correlated with runoff variation. Changes in agricultural production space and forest ecological space show statistically significant negative correlation with runoff change, while industrial production space change exhibits a significant positive correlation with runoff change. The expansion of production space, particularly industrial production space, leads to increased runoff, whereas the enlargement of agricultural production space and forest ecological space can reduce runoff. This article contributes to highlighting the role of land use policy in hydrological regulation, providing a scientific basis for optimizing territorial spatial planning to mitigate flood risks and protect water resources. Full article
(This article belongs to the Topic Natural Hazards and Disaster Risks Reduction, 2nd Edition)
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13 pages, 982 KiB  
Article
Salivary pH Modulation and Antimicrobial Properties of Oregano-Oil Jelly in Relation to Menstrual and Menopausal Status
by Georgiana Ioana Potra Cicalău, Gabriela Ciavoi, Ioana Scrobota, Ionut Daniel Venter, Madalin Florin Ganea, Marc Cristian Ghitea, Evelin Claudia Ghitea, Maria Flavia Gîtea, Timea Claudia Ghitea, Csaba Nagy, Diana Constanta Pelea, Luciana Dobjanschi, Octavia Gligor, Corina Moisa and Mariana Ganea
Nutrients 2025, 17(15), 2480; https://doi.org/10.3390/nu17152480 - 29 Jul 2025
Viewed by 149
Abstract
Background: Salivary pH plays a critical role in oral health by influencing enamel demineralization, buffering capacity, and the ecology of oral microbiota. Essential oils such as Origanum vulgare (oregano) possess well-documented antimicrobial properties that may reduce acidogenic bacterial activity. However, the effects of [...] Read more.
Background: Salivary pH plays a critical role in oral health by influencing enamel demineralization, buffering capacity, and the ecology of oral microbiota. Essential oils such as Origanum vulgare (oregano) possess well-documented antimicrobial properties that may reduce acidogenic bacterial activity. However, the effects of edible delivery systems like jellies on salivary pH modulation and their potential interactions with hormonal states remain poorly understood. Methods: This study evaluated the in vitro antimicrobial activity of an oregano-oil-based jelly formulation against standard bacterial (Staphylococcus aureus, Streptococcus pyogenes, and Escherichia coli) and fungal (Candida albicans) strains using the Kirby–Bauer disc diffusion method. Additionally, a human trial (n = 91) measured salivary pH before and after administration of the oregano-oil jelly. Participants were characterized by age, smoking status, menopausal status, and presence of menstruation. Multiple linear regression was used to identify predictors of final salivary pH. Results: The oregano-oil jelly demonstrated strong in vitro antimicrobial activity, with inhibition zones up to 8 mm for E. coli and C. albicans. In vivo, mean unstimulated salivary pH increased from 6.94 to 7.07 overall, indicating a mild alkalinizing effect. However, menstruating participants showed a significant decrease in final pH (from 7.03 to 6.78). Multiple regression identified menstruation as a significant negative predictor (β = −0.377, p < 0.001) and initial pH as a positive predictor (β = +0.275, p = 0.002). Menopausal status was not a significant predictor, likely due to the small sample size. Conclusions: Oregano-oil jellies may represent a promising natural approach to support oral health by increasing salivary pH and providing strong antimicrobial activity. However, physiological states such as menstruation can significantly modulate this response, underscoring the importance of personalized or phase-aware oral care strategies. Further studies with larger, diverse cohorts and controlled hormonal assessments are needed to validate these findings and optimize product formulations. Full article
(This article belongs to the Section Nutrition and Metabolism)
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25 pages, 1599 KiB  
Article
Climate-Regulating Industrial Ecosystems: An AI-Optimised Framework for Green Infrastructure Performance
by Shamima Rahman, Ali Ahsan and Nazrul Islam Pramanik
Sustainability 2025, 17(15), 6891; https://doi.org/10.3390/su17156891 - 29 Jul 2025
Viewed by 115
Abstract
This paper presents an Industrial–Ecological Symbiosis Framework that enables industrial operations to achieve quantifiable ecological gains without compromising operational efficiency. The model integrates Mixed-Integer Linear Programming (MILP) with AI-optimised forecasting to allow real-time adjustments to production and resource use. It was tested across [...] Read more.
This paper presents an Industrial–Ecological Symbiosis Framework that enables industrial operations to achieve quantifiable ecological gains without compromising operational efficiency. The model integrates Mixed-Integer Linear Programming (MILP) with AI-optimised forecasting to allow real-time adjustments to production and resource use. It was tested across the apparel manufacturing, metalworking, and mining sectors using publicly available benchmark datasets. The framework delivered consistent improvements: fabric waste was reduced by 10.8%, energy efficiency increased by 15%, and carbon emissions decreased by 14%. These gains were statistically validated and quantified using ecological equivalence metrics, including forest carbon sequestration rates and wetland restoration values. Outputs align with national carbon accounting systems, SDG reporting, and policy frameworks—specifically contributing to SDGs 6, 9, and 11–13. By linking industrial decisions directly to verified environmental outcomes, this study demonstrates how adaptive optimisation can support climate goals while maintaining productivity. The framework offers a reproducible, cross-sectoral solution for sustainable industrial development. Full article
(This article belongs to the Section Environmental Sustainability and Applications)
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24 pages, 5785 KiB  
Article
Phylogenetic Reassessment of Murinae Inferred from the Mitogenome of the Monotypic Genus Dacnomys Endemic to Southeast Asia: New Insights into Genetic Diversity Erosion
by Zhongsong Wang, Di Zhao, Wenyu Song and Wenge Dong
Biology 2025, 14(8), 948; https://doi.org/10.3390/biology14080948 - 28 Jul 2025
Viewed by 242
Abstract
The Millard’s rat (Dacnomys millardi), a threatened murid endemic to Southeast Asian montane rainforests and the sole member of its monotypic genus, faces escalating endangered risks as a Near Threatened species in China’s Biodiversity Red List. This ecologically specialized rodent exhibits [...] Read more.
The Millard’s rat (Dacnomys millardi), a threatened murid endemic to Southeast Asian montane rainforests and the sole member of its monotypic genus, faces escalating endangered risks as a Near Threatened species in China’s Biodiversity Red List. This ecologically specialized rodent exhibits diagnostic morphological adaptations—hypertrophied upper molars and cryptic pelage—that underpin niche differentiation in undisturbed tropical/subtropical forests. Despite its evolutionary distinctiveness, the conservation prioritization given to Dacnomys is hindered due to a deficiency of data and unresolved phylogenetic relationships. Here, we integrated morphological analyses with the first complete mitogenome (16,289 bp in size; no structural rearrangements) of D. millardi to validate its phylogenetic placement within the subfamily Murinae and provide novel insights into genetic diversity erosion. Bayesian and maximum likelihood phylogenies robustly supported Dacnomys as sister to Leopoldamys (PP = 1.0; BS = 100%), with an early Pliocene divergence (~4.8 Mya, 95% HPD: 3.65–5.47 Mya). Additionally, based on its basal phylogenetic position within Murinae, we propose reclassifying Micromys from Rattini to the tribe Micromyini. Codon usage bias analyses revealed pervasive purifying selection (Ka/Ks < 1), constraining mitogenome evolution. Genetic diversity analyses showed low genetic variation (CYTB: π = 0.0135 ± 0.0023; COX1: π = 0.0101 ± 0.0025) in fragmented populations. We propose three new insights into this genetic diversity erosion. (1) Evolutionary constraints: genome-wide evolutionary conservation and shallow evolutionary history (~4.8 Mya) limited mutation accumulation. (2) Anthropogenic pressures: deforestation-driven fragmentation of habitats (>20,000 km2/year loss since 2000) has reduced effective population size, exacerbating genetic drift. (3) Ecological specialization: long-term adaptation to stable niches favored genomic optimization over adaptive flexibility. These findings necessitate suitable conservation action by enforcing protection of core habitats to prevent deforestation-driven population collapses and advocating IUCN reclassification of D. millardi from Data Deficient to Near Threatened. Full article
(This article belongs to the Section Genetics and Genomics)
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25 pages, 8105 KiB  
Article
Monitoring Critical Mountain Vertical Zonation in the Surkhan River Basin Based on a Comparative Analysis of Multi-Source Remote Sensing Features
by Wenhao Liu, Hong Wan, Peng Guo and Xinyuan Wang
Remote Sens. 2025, 17(15), 2612; https://doi.org/10.3390/rs17152612 - 27 Jul 2025
Viewed by 271
Abstract
Amidst the intensification of global climate change and the increasing impacts of human activities, ecosystem patterns and processes have undergone substantial transformations. The distribution and evolutionary dynamics of mountain ecosystems have become a focal point in ecological research. The Surkhan River Basin is [...] Read more.
Amidst the intensification of global climate change and the increasing impacts of human activities, ecosystem patterns and processes have undergone substantial transformations. The distribution and evolutionary dynamics of mountain ecosystems have become a focal point in ecological research. The Surkhan River Basin is located in the transitional zone between the arid inland regions of Central Asia and the mountain systems, where its unique physical and geographical conditions have shaped distinct patterns of vertical zonation. Utilizing Landsat imagery, this study applies a hierarchical classification approach to derive land cover classifications within the Surkhan River Basin. By integrating the NDVI (normalized difference vegetation index) and DEM (digital elevation model (30 m SRTM)), an “NDVI-DEM-Land Cover” scatterplot is constructed to analyze zonation characteristics from 1980 to 2020. The 2020 results indicate that the elevation boundary between the temperate desert and mountain grassland zones is 1100 m, while the boundary between the alpine cushion vegetation zone and the ice/snow zone is 3770 m. Furthermore, leveraging DEM and LST (land surface temperature) data, a potential energy analysis model is employed to quantify potential energy differentials between adjacent zones, enabling the identification of ecological transition areas. The potential energy analysis further refines the transition zone characteristics, indicating that the transition zone between the temperate desert and mountain grassland zones spans 1078–1139 m with a boundary at 1110 m, while the transition between the alpine cushion vegetation and ice/snow zones spans 3729–3824 m with a boundary at 3768 m. Cross-validation with scatterplot results confirms that the scatterplot analysis effectively delineates stable zonation boundaries with strong spatiotemporal consistency. Moreover, the potential energy analysis offers deeper insights into ecological transition zones, providing refined boundary identification. The integration of these two approaches addresses the dimensional limitations of traditional vertical zonation studies, offering a transferable methodological framework for mountain ecosystem research. Full article
(This article belongs to the Special Issue Temporal and Spatial Analysis of Multi-Source Remote Sensing Images)
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22 pages, 4619 KiB  
Article
Physiological and Transcriptomic Analyses Reveal Regulatory Mechanisms of Adventitious Root Formation in In Vitro Culture of Cinnamomum camphora
by Yuntong Zhang, Ting Zhang, Yongjie Zheng, Jun Wang, Chenglin Luo, Yuhua Li and Xinliang Liu
Int. J. Mol. Sci. 2025, 26(15), 7264; https://doi.org/10.3390/ijms26157264 - 27 Jul 2025
Viewed by 278
Abstract
Cinnamomum camphora is an ecologically and economically significant species, highly valued for its essential oil production and environmental benefits. Although a tissue culture system has been established for C. camphora, large-scale propagation remains limited due to the inconsistent formation of adventitious roots [...] Read more.
Cinnamomum camphora is an ecologically and economically significant species, highly valued for its essential oil production and environmental benefits. Although a tissue culture system has been established for C. camphora, large-scale propagation remains limited due to the inconsistent formation of adventitious roots (ARs). This study investigated AR formation from callus tissue, focusing on associated physiological changes and gene expression dynamics. During AR induction, contents of soluble sugars and proteins decreased, alongside reduced activities of antioxidant enzymes, including superoxide dismutase (SOD), peroxidase (POD), and polyphenol oxidase (PPO). Levels of indole-3-acetic acid (IAA) and abscisic acid (ABA) decreased significantly throughout AR formation. Zeatin riboside (ZR) levels initially declined and then rose, whereas gibberellic acid (GA) levels displayed the opposite trend. Comparative transcriptomic and temporal expression analyses identified differentially expressed genes (DEGs), which were grouped into four distinct expression patterns. KEGG pathway enrichment indicated that 67 DEGs are involved in plant hormone signaling pathways and that 38 DEGs are involved in the starch and sucrose metabolism pathway. Additionally, protein–protein interaction network (PPI) analysis revealed ten key regulatory genes, which are mainly involved in auxin, cytokinin, GA, ABA, and ethylene signaling pathways. The reliability of the transcriptome data was further validated by quantitative real-time PCR. Overall, this study provides new insights into the physiological and molecular mechanisms underlying AR formation in C. camphora and offers valuable guidance for optimizing tissue culture systems. Full article
(This article belongs to the Special Issue Emerging Insights into Phytohormone Signaling in Plants)
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18 pages, 5229 KiB  
Article
Exploring the Spectral Variability of Estonian Lakes Using Spaceborne Imaging Spectroscopy
by Alice Fabbretto, Mariano Bresciani, Andrea Pellegrino, Kersti Kangro, Anna Joelle Greife, Lodovica Panizza, François Steinmetz, Joel Kuusk, Claudia Giardino and Krista Alikas
Appl. Sci. 2025, 15(15), 8357; https://doi.org/10.3390/app15158357 - 27 Jul 2025
Viewed by 239
Abstract
This study investigates the potential of spaceborne imaging spectroscopy to support the analysis of the status of two major Estonian lakes, i.e., Lake Peipsi and Lake Võrtsjärv, using data from the PRISMA and EnMAP missions. The study encompasses nine specific applications across 12 [...] Read more.
This study investigates the potential of spaceborne imaging spectroscopy to support the analysis of the status of two major Estonian lakes, i.e., Lake Peipsi and Lake Võrtsjärv, using data from the PRISMA and EnMAP missions. The study encompasses nine specific applications across 12 satellite scenes, including the validation of remote sensing reflectance (Rrs), optical water type classification, estimation of phycocyanin concentration, detection of macrophytes, and characterization of reflectance for lake ice/snow coverage. Rrs validation, which was performed using in situ measurements and Sentinel-2 and Sentinel-3 as references, showed a level of agreement with Spectral Angle < 16°. Hyperspectral imagery successfully captured fine-scale spatial and spectral features not detectable by multispectral sensors, in particular it was possible to identify cyanobacterial pigments and optical variations driven by seasonal and meteorological dynamics. Through the combined use of in situ observations, the study can serve as a starting point for the use of hyperspectral data in northern freshwater systems, offering new insights into ecological processes. Given the increasing global concern over freshwater ecosystem health, this work provides a transferable framework for leveraging new-generation hyperspectral missions to enhance water quality monitoring on a global scale. Full article
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27 pages, 4682 KiB  
Article
DERIENet: A Deep Ensemble Learning Approach for High-Performance Detection of Jute Leaf Diseases
by Mst. Tanbin Yasmin Tanny, Tangina Sultana, Md. Emran Biswas, Chanchol Kumar Modok, Arjina Akter, Mohammad Shorif Uddin and Md. Delowar Hossain
Information 2025, 16(8), 638; https://doi.org/10.3390/info16080638 - 27 Jul 2025
Viewed by 139
Abstract
Jute, a vital lignocellulosic fiber crop with substantial industrial and ecological relevance, continues to suffer considerable yield and quality degradation due to pervasive foliar pathologies. Traditional diagnostic modalities reliant on manual field inspections are inherently constrained by subjectivity, diagnostic latency, and inadequate scalability [...] Read more.
Jute, a vital lignocellulosic fiber crop with substantial industrial and ecological relevance, continues to suffer considerable yield and quality degradation due to pervasive foliar pathologies. Traditional diagnostic modalities reliant on manual field inspections are inherently constrained by subjectivity, diagnostic latency, and inadequate scalability across geographically distributed agrarian systems. To transcend these limitations, we propose DERIENet, a robust and scalable classification approach within a deep ensemble learning framework. It is meticulously engineered by integrating three high-performing convolutional neural networks—ResNet50, InceptionV3, and EfficientNetB0—along with regularization, batch normalization, and dropout strategies, to accurately classify jute leaf diseases such as Cercospora Leaf Spot, Golden Mosaic Virus, and healthy leaves. A key methodological contribution is the design of a novel augmentation pipeline, termed Geometric Localized Occlusion and Adaptive Rescaling (GLOAR), which dynamically modulates photometric and geometric distortions based on image entropy and luminance to synthetically upscale a limited dataset (920 images) into a significantly enriched and diverse dataset of 7800 samples, thereby mitigating overfitting and enhancing domain generalizability. Empirical evaluation, utilizing a comprehensive set of performance metrics—accuracy, precision, recall, F1-score, confusion matrices, and ROC curves—demonstrates that DERIENet achieves a state-of-the-art classification accuracy of 99.89%, with macro-averaged and weighted average precision, recall, and F1-score uniformly at 99.89%, and an AUC of 1.0 across all disease categories. The reliability of the model is validated by the confusion matrix, which shows that 899 out of 900 test images were correctly identified and that there was only one misclassification. Comparative evaluations of the various ensemble baselines, such as DenseNet201, MobileNetV2, and VGG16, and individual base learners demonstrate that DERIENet performs noticeably superior to all baseline models. It provides a highly interpretable, deployment-ready, and computationally efficient architecture that is ideal for integrating into edge or mobile platforms to facilitate in situ, real-time disease diagnostics in precision agriculture. Full article
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29 pages, 17807 KiB  
Article
Low-Cost Microalgae Cell Concentration Estimation in Hydrochemistry Applications Using Computer Vision
by Julia Borisova, Ivan V. Morshchinin, Veronika I. Nazarova, Nelli Molodkina and Nikolay O. Nikitin
Sensors 2025, 25(15), 4651; https://doi.org/10.3390/s25154651 - 27 Jul 2025
Viewed by 257
Abstract
Accurate and efficient estimation of microalgae cell concentration is critical for applications in hydrochemical monitoring, biofuel production, pharmaceuticals, and ecological studies. Traditional methods, such as manual counting with a hemocytometer, are time-consuming and prone to human error, while automated systems are often costly [...] Read more.
Accurate and efficient estimation of microalgae cell concentration is critical for applications in hydrochemical monitoring, biofuel production, pharmaceuticals, and ecological studies. Traditional methods, such as manual counting with a hemocytometer, are time-consuming and prone to human error, while automated systems are often costly and require extensive training data. This paper presents a low-cost, automated approach for estimating cell concentration in Chlorella vulgaris suspensions using classical computer vision techniques. The proposed method eliminates the need for deep learning by leveraging the Hough circle transform to detect and count cells in microscope images, combined with a conversion factor to translate pixel measurements into metric units for direct concentration calculation (cells/mL). Validation against manual hemocytometer counts demonstrated strong agreement, with a Pearson correlation coefficient of 0.96 and a mean percentage difference of 17.96%. The system achieves rapid processing (under 30 s per image) and offers interpretability, allowing specialists to verify results visually. Key advantages include affordability, minimal hardware requirements, and adaptability to other microbiological applications. Limitations, such as sensitivity to cell clumping and impurities, are discussed. This work provides a practical, accessible solution for laboratories lacking expensive automated equipment, bridging the gap between manual methods and high-end technologies. Full article
(This article belongs to the Section Environmental Sensing)
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14 pages, 1333 KiB  
Article
Reliable RT-qPCR Normalization in Polypogon fugax: Reference Gene Selection for Multi-Stress Conditions and ACCase Expression Analysis in Herbicide Resistance
by Yufei Zhao, Xu Yang, Qiang Hu, Jie Zhang, Sumei Wan and Wen Chen
Agronomy 2025, 15(8), 1813; https://doi.org/10.3390/agronomy15081813 - 26 Jul 2025
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Abstract
Asia minor bluegrass (Polypogon fugax), a widespread Poaceae weed, exhibits broad tolerance to abiotic stresses. Validated reference genes (RGs) for reliable RT-qPCR normalization in this ecologically and agriculturally significant species remain unidentified. This study identified eight candidate RGs using transcriptome data [...] Read more.
Asia minor bluegrass (Polypogon fugax), a widespread Poaceae weed, exhibits broad tolerance to abiotic stresses. Validated reference genes (RGs) for reliable RT-qPCR normalization in this ecologically and agriculturally significant species remain unidentified. This study identified eight candidate RGs using transcriptome data from seedling tissues. We assessed the expression stability of these eight RGs across various abiotic stresses and developmental stages using Delta Ct, BestKeeper, geNorm, and NormFinder algorithms. A comprehensive stability ranking was generated using RefFinder, with validation performed using the target genes COR413 and P5CS. Results identified EIF4A and TUB as the optimal RG combination for normalizing gene expression during heat stress, cold stress, and growth stages. EIF4A and ACT were most stable under drought stress, EIF4A and 28S under salt stress, and EIF4A and EF-1 under cadmium (Cd) stress. Furthermore, EIF4A and UBQ demonstrated optimal stability under herbicide stress. Additionally, application of validated RGs revealed higher acetyl-CoA carboxylase gene (ACCase) expression in one herbicide-resistant population, suggesting target-site gene overexpression contributes to resistance. This work presents the first systematic evaluation of RGs in P. fugax. The identified stable RGs provide essential tools for future gene expression studies on growth and abiotic stress responses in this species, facilitating deeper insights into the molecular basis of its weediness and adaptability. Full article
(This article belongs to the Special Issue Adaptive Evolution in Weeds: Molecular Basis and Management)
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