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Keywords = dye-guest encapsulation

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12 pages, 3018 KB  
Article
Density Functional Theory Prediction of Laser Dyes–Cucurbit[7]uril Binding Affinities
by Vladislava Petkova, Stefan Dobrev, Nikoleta Kircheva, Dimana Nazarova, Lian Nedelchev, Valya Nikolova, Todor Dudev and Silvia Angelova
Molecules 2024, 29(18), 4394; https://doi.org/10.3390/molecules29184394 - 16 Sep 2024
Cited by 1 | Viewed by 1712
Abstract
Among a variety of diverse host molecules distinguished by specific characteristics, the cucurbit[n]uril (CB) family stands out, being widely known for the attractive properties of its representatives along with their increasingly expanding area of applications. The presented herewith density functional theory (DFT)-based study [...] Read more.
Among a variety of diverse host molecules distinguished by specific characteristics, the cucurbit[n]uril (CB) family stands out, being widely known for the attractive properties of its representatives along with their increasingly expanding area of applications. The presented herewith density functional theory (DFT)-based study is inspired by some recent studies exploring CBs as a key component in multifunctional hydrogels with applications in materials science, thus considering CB-assisted supramolecular polymeric hydrogels (CB-SPHs), a new class of 3D cross-linked polymer materials. The research systematically investigates the inclusion process between the most applied representative of the cavitand family CB[7] and a series of laser dye molecules as guests, as well as the possible encapsulation of a model side chain from the photoanisotropic polymer PAZO and its sodium-containing salt. The obtained results shed light on the most significant factors that play a key role in the recognition process, such as binding mode, charge, and dielectric constant of the solvent. The observed findings provide valuable insights at a molecular level for the design of dye–CB[7] systems in various environments, with potential applications in intriguing and prosperous fields like photonics and material science. Full article
(This article belongs to the Section Computational and Theoretical Chemistry)
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22 pages, 10091 KB  
Review
Host–Guest Metal–Organic Frameworks-Based Long-Afterglow Luminescence Materials
by Zhi-Chen Zhang, Zhi-Gang Gu and Jian Zhang
Molecules 2024, 29(13), 2989; https://doi.org/10.3390/molecules29132989 - 23 Jun 2024
Cited by 8 | Viewed by 4423
Abstract
Long-afterglow materials have a broad of applications in optoelectronic devices, sensors, medicine and other fields due to their excellent luminescent properties. The host-guest long-afterglow MOFs material combines the advantages of multi-component characteristics and the stability of MOFs, which improves its luminous performance and [...] Read more.
Long-afterglow materials have a broad of applications in optoelectronic devices, sensors, medicine and other fields due to their excellent luminescent properties. The host-guest long-afterglow MOFs material combines the advantages of multi-component characteristics and the stability of MOFs, which improves its luminous performance and expands its other properties. This review introduces the classification, synthesis and application of host-guest MOFs materials with long afterglow. Due to their rigid frames and multi-channel characteristics, MOFs can load common guest materials including rare earth metals, organic dyes, carbon dots, etc. The synthesis methods of loading guest materials into MOFs include solvothermal synthesis, post-encapsulation, post-modification, etc. Those long-afterglow host-guest MOFs have a wide range of applications in the fields of sensors, information security and biological imaging. Full article
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14 pages, 2801 KB  
Article
Confinement of a Styryl Dye into Nanoporous Aluminophosphates: Channels vs. Cavities
by Ainhoa Oliden-Sánchez, Rebeca Sola-Llano, Joaquín Pérez-Pariente, Luis Gómez-Hortigüela and Virginia Martínez-Martínez
Int. J. Mol. Sci. 2024, 25(7), 3577; https://doi.org/10.3390/ijms25073577 - 22 Mar 2024
Viewed by 1610
Abstract
Styryl dyes are generally poor fluorescent molecules inherited from their flexible molecular structures. However, their emissive properties can be boosted by restricting their molecular motions. A tight confinement into inorganic molecular sieves is a good strategy to yield highly fluorescent hybrid systems. In [...] Read more.
Styryl dyes are generally poor fluorescent molecules inherited from their flexible molecular structures. However, their emissive properties can be boosted by restricting their molecular motions. A tight confinement into inorganic molecular sieves is a good strategy to yield highly fluorescent hybrid systems. In this work, we compare the confinement effect of two Mg-aluminophosphate zeotypes with distinct pore systems (the AEL framework, a one-dimensional channeled structure with elliptical pores of 6.5 Å × 4.0 Å, and the CHA framework, composed of large cavities of 6.7 Å × 10.0 Å connected by eight-ring narrower windows) for the encapsulation of 4-DASPI styryl dye (trans-4-[4-(Dimethylamino)styryl]-1-methylpyridinium iodide). The resultant hybrid systems display significantly improved photophysical features compared to 4-DASPI in solution as a result of tight confinement in both host inorganic frameworks. Molecular simulations reveal a tighter confinement of 4-DASPI in the elliptical channels of AEL, explaining its excellent photophysical properties. On the other hand, a singular arrangement of 4-DASPI dye is found when confined within the cavity-based CHA framework, where the 4-DASPI molecule spans along two adjacent cavities, with each aromatic ring sitting on these adjacent cavities and the polymethine chain residing within the narrower eight-ring window. However, despite the singularity of this host–guest arrangement, it provides less tight confinement for 4-DASPI than AEL, resulting in a slightly lower quantum yield. Full article
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14 pages, 3861 KB  
Article
N-Methyl- and N-Phenylpiperazine Functionalized Styryl Dyes Inside Cucurbiturils: Theoretical Assessment of the Factors Governing the Host–Guest Recognition
by Nikoleta Kircheva, Vladislava Petkova, Stefan Dobrev, Valya Nikolova, Silvia Angelova and Todor Dudev
Molecules 2023, 28(24), 8130; https://doi.org/10.3390/molecules28248130 - 16 Dec 2023
Cited by 2 | Viewed by 2051
Abstract
The family of cucurbiturils (CBs), the unique pumpkin-shaped macrocycles, has received great attention over the past four decades owing to their remarkable recognition properties. They have found diverse applications including biosensing and drug delivery technologies. The cucurbituril complexation of guest molecules can modulate [...] Read more.
The family of cucurbiturils (CBs), the unique pumpkin-shaped macrocycles, has received great attention over the past four decades owing to their remarkable recognition properties. They have found diverse applications including biosensing and drug delivery technologies. The cucurbituril complexation of guest molecules can modulate their pKas, improve their solubility in aqueous solution, and reduce the adverse effects of the drugs, as well as enhance the stability and/or enable targeted delivery of the drug molecule. Employing twelve cationic styryl dyes with N-methyl- and N-phenylpiperazine functionality as probes, we attempted to understand the factors that govern the host–guest complexation of such molecules within CB[7] and CB[8] host systems. Various key factors determining the process were recognized, such as the pH and dielectric constant of the medium, the cavity size of the host, the chemical characteristics of the substituents in the guest entity, and the presence/absence of metal cations. The presented results add to our understanding (at the molecular level) of the mechanism of encapsulation of styryl dyes by cucurbiturils, thus shedding new light on various aspects of the intriguing complexation chemistry and the underlying recognition processes. Full article
(This article belongs to the Special Issue Molecular Modeling: Advancements and Applications II)
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29 pages, 5127 KB  
Article
Molecular Engineering of E. coli Bacterioferritin: A Versatile Nanodimensional Protein Cage
by Anton M. van der Ven, Hawa Gyamfi, Uthaiwan Suttisansanee, Muhammad S. Ahmad, Zhengding Su, Robert M. Taylor, Amanda Poole, Sorina Chiorean, Elisabeth Daub, Taylor Urquhart and John F. Honek
Molecules 2023, 28(12), 4663; https://doi.org/10.3390/molecules28124663 - 9 Jun 2023
Cited by 5 | Viewed by 3529
Abstract
Currently, intense interest is focused on the discovery and application of new multisubunit cage proteins and spherical virus capsids to the fields of bionanotechnology, drug delivery, and diagnostic imaging as their internal cavities can serve as hosts for fluorophores or bioactive molecular cargo. [...] Read more.
Currently, intense interest is focused on the discovery and application of new multisubunit cage proteins and spherical virus capsids to the fields of bionanotechnology, drug delivery, and diagnostic imaging as their internal cavities can serve as hosts for fluorophores or bioactive molecular cargo. Bacterioferritin is unusual in the ferritin protein superfamily of iron-storage cage proteins in that it contains twelve heme cofactors and is homomeric. The goal of the present study is to expand the capabilities of ferritins by developing new approaches to molecular cargo encapsulation employing bacterioferritin. Two strategies were explored to control the encapsulation of a diverse range of molecular guests compared to random entrapment, a predominant strategy employed in this area. The first was the inclusion of histidine-tag peptide fusion sequences within the internal cavity of bacterioferritin. This approach allowed for the successful and controlled encapsulation of a fluorescent dye, a protein (fluorescently labeled streptavidin), or a 5 nm gold nanoparticle. The second strategy, termed the heme-dependent cassette strategy, involved the substitution of the native heme with heme analogs attached to (i) fluorescent dyes or (ii) nickel-nitrilotriacetate (NTA) groups (which allowed for controllable encapsulation of a histidine-tagged green fluorescent protein). An in silico docking approach identified several small molecules able to replace the heme and capable of controlling the quaternary structure of the protein. A transglutaminase-based chemoenzymatic approach to surface modification of this cage protein was also accomplished, allowing for future nanoparticle targeting. This research presents novel strategies to control a diverse set of molecular encapsulations and adds a further level of sophistication to internal protein cavity engineering. Full article
(This article belongs to the Special Issue Bioconjugation Strategies in Drug Delivery and Molecular Imaging)
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29 pages, 6041 KB  
Review
Luminescent Guests Encapsulated in Metal–Organic Frameworks for Portable Fluorescence Sensor and Visual Detection Applications: A Review
by Xu Xu, Muyao Ma, Tongxin Sun, Xin Zhao and Lei Zhang
Biosensors 2023, 13(4), 435; https://doi.org/10.3390/bios13040435 - 29 Mar 2023
Cited by 36 | Viewed by 6951
Abstract
Metal–organic frameworks (MOFs) have excellent applicability in several fields and have significant structural advantages, due to their open pore structure, high porosity, large specific surface area, and easily modifiable and functionalized porous surface. In addition, a variety of luminescent guest (LG) species can [...] Read more.
Metal–organic frameworks (MOFs) have excellent applicability in several fields and have significant structural advantages, due to their open pore structure, high porosity, large specific surface area, and easily modifiable and functionalized porous surface. In addition, a variety of luminescent guest (LG) species can be encapsulated in the pores of MOFs, giving MOFs a broader luminescent capability. The applications of a variety of LG@MOF sensors, constructed by doping MOFs with LGs such as lanthanide ions, carbon quantum dots, luminescent complexes, organic dyes, and metal nanoclusters, for fluorescence detection of various target analyses such as ions, biomarkers, pesticides, and preservatives are systematically introduced in this review. The development of these sensors for portable visual fluorescence sensing applications is then covered. Finally, the challenges that these sectors currently face, as well as the potential for future growth, are briefly discussed. Full article
(This article belongs to the Special Issue Advances in Fluorescent Probe Biosensing)
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33 pages, 5242 KB  
Review
Synthesis and Biomedical Applications of Highly Porous Metal–Organic Frameworks
by Ahmed Ahmed, Darragh McHugh and Constantina Papatriantafyllopoulou
Molecules 2022, 27(19), 6585; https://doi.org/10.3390/molecules27196585 - 5 Oct 2022
Cited by 16 | Viewed by 4569
Abstract
In this review, aspects of the synthesis, framework topologies, and biomedical applications of highly porous metal–organic frameworks are discussed. The term “highly porous metal–organic frameworks” (HPMOFs) is used to denote MOFs with a surface area larger than 4000 m2 g−1. [...] Read more.
In this review, aspects of the synthesis, framework topologies, and biomedical applications of highly porous metal–organic frameworks are discussed. The term “highly porous metal–organic frameworks” (HPMOFs) is used to denote MOFs with a surface area larger than 4000 m2 g−1. Such compounds are suitable for the encapsulation of a variety of large guest molecules, ranging from organic dyes to drugs and proteins, and hence they can address major contemporary challenges in the environmental and biomedical field. Numerous synthetic approaches towards HPMOFs have been developed and discussed herein. Attempts are made to categorise the most successful synthetic strategies; however, these are often not independent from each other, and a combination of different parameters is required to be thoroughly considered for the synthesis of stable HPMOFs. The majority of the HPMOFs in this review are of special interest not only because of their high porosity and fascinating structures, but also due to their capability to encapsulate and deliver drugs, proteins, enzymes, genes, or cells; hence, they are excellent candidates in biomedical applications that involve drug delivery, enzyme immobilisation, gene targeting, etc. The encapsulation strategies are described, and the MOFs are categorised according to the type of biomolecule they are able to encapsulate. The research field of HPMOFs has witnessed tremendous development recently. Their intriguing features and potential applications attract researchers’ interest and promise an auspicious future for this class of highly porous materials. Full article
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10 pages, 2626 KB  
Article
A Luminescent Guest@MOF Nanoconfined Composite System for Solid-State Lighting
by Tao Xiong, Yang Zhang, Nader Amin and Jin-Chong Tan
Molecules 2021, 26(24), 7583; https://doi.org/10.3390/molecules26247583 - 14 Dec 2021
Cited by 13 | Viewed by 3943
Abstract
A series of rhodamine B (RhB) encapsulated zeolitic imidazolate framework-8 (RhB@ZIF-8) composite nanomaterials with different concentrations of guest loadings have been synthesized and characterized in order to investigate their applicability to solid-state white-light-emitting diodes (WLEDs). The nanoconfinement of the rhodamine B dye (guest) [...] Read more.
A series of rhodamine B (RhB) encapsulated zeolitic imidazolate framework-8 (RhB@ZIF-8) composite nanomaterials with different concentrations of guest loadings have been synthesized and characterized in order to investigate their applicability to solid-state white-light-emitting diodes (WLEDs). The nanoconfinement of the rhodamine B dye (guest) in the sodalite cages of ZIF-8 (host) is supported by fluorescence spectroscopic and photodynamic lifetime data. The quantum yield (QY) of the luminescent RhB@ZIF-8 material approaches unity when the guest loading is controlled at a low level: 1 RhB guest per ~7250 cages. We show that the hybrid (luminescent guest) LG@MOF material, obtained by mechanically mixing a suitably high-QY RhB@ZIF-8 red emitter with a green-emitting fluorescein@ZIF-8 “phosphor” with a comparably high QY, could yield a stable, intensity tunable, near-white light emission under specific test conditions described. Our results demonstrate a novel LG@MOF composite system exhibiting a good combination of photophysical properties and photostability, for potential applications in WLEDs, photoswitches, bioimaging and fluorescent sensors. Full article
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13 pages, 5401 KB  
Article
Encapsulation of Rhodamine 6G Dye Molecules for Affecting Symmetry of Supramolecular Crystals of Melamine-Barbiturate
by Pavel V. Nesterov, Vladimir V. Shilovskikh, Alexander D. Sokolov, Vladislav V. Gurzhiy, Alexander S. Novikov, Alexandra A. Timralieva, Elena V. Belogub, Nikolay D. Kondratyuk, Nikita D. Orekhov and Ekaterina V. Skorb
Symmetry 2021, 13(7), 1119; https://doi.org/10.3390/sym13071119 - 23 Jun 2021
Cited by 16 | Viewed by 5733
Abstract
Supramolecular organic systems can be used as a host for the encapsulation of small organic molecules. Here, we chose melamine barbiturate as a robust system capable of supramolecular assembly and the Rhodamine 6G dye entrapment as a guest molecule. The encapsulation of the [...] Read more.
Supramolecular organic systems can be used as a host for the encapsulation of small organic molecules. Here, we chose melamine barbiturate as a robust system capable of supramolecular assembly and the Rhodamine 6G dye entrapment as a guest molecule. The encapsulation of the dye was investigated by UV-visible spectroscopy, SEM and optical fluorescent microscopy while the insight into the crystal structure of the system was obtained by single crystal and powder XRD. For investigation of the system’s properties on a molecular level, the DFT and Classical Molecular Dynamics methods were utilized. Surprisingly, both theoretical and experimental data show not only the successful encapsulation of Rhodamine 6G molecules inside the supramolecular assembly, but also that inclusion of such molecules leads to the drastic improvement in the organic crystal shape. The melamine barbiturate in presence of the Rhodamine 6G molecules tend to form crystals with lesser degree of twinning and higher symmetry in shape than the ones without dye molecules. Full article
(This article belongs to the Section Chemistry: Symmetry/Asymmetry)
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18 pages, 4986 KB  
Article
Self-Assembling Systems Based on Pillar[5]arenes and Surfactants for Encapsulation of Diagnostic Dye DAPI
by Anastasia Nazarova, Arthur Khannanov, Artur Boldyrev, Luidmila Yakimova and Ivan Stoikov
Int. J. Mol. Sci. 2021, 22(11), 6038; https://doi.org/10.3390/ijms22116038 - 3 Jun 2021
Cited by 19 | Viewed by 4326
Abstract
In this paper, we report the development of the novel self-assembling systems based on oppositely charged Pillar[5]arenes and surfactants for encapsulation of diagnostic dye DAPI. For this purpose, the aggregation behavior of synthesized macrocycles and surfactants in the presence of Pillar[5]arenes functionalized by [...] Read more.
In this paper, we report the development of the novel self-assembling systems based on oppositely charged Pillar[5]arenes and surfactants for encapsulation of diagnostic dye DAPI. For this purpose, the aggregation behavior of synthesized macrocycles and surfactants in the presence of Pillar[5]arenes functionalized by carboxy and ammonium terminal groups was studied. It has been demonstrated that by varying the molar ratio in Pillar[5]arene-surfactant systems, it is possible to obtain various types of supramolecular systems: host–guest complexes at equimolar ratio of Pillar[5]arene-surfactant and interpolyelectrolyte complexes (IPECs) are self-assembled materials formed in aqueous medium by two oppositely charged polyelectrolytes (macrocycle and surfactant micelles). It has been suggested that interaction of Pillar[5]arenes with surfactants is predominantly driven by cooperative electrostatic interactions. Synthesized stoichiometric and non-stoichiometric IPECs specifically interact with DAPI. UV-vis, luminescent spectroscopy and molecular docking data show the structural feature of dye-loaded IPEC and key role of the electrostatic, π–π-stacking, cation–π interactions in their formation. Such a strategy for the design of supramolecular Pillar[5]arene-surfactant systems will lead to a synergistic interaction of the two components and will allow specific interaction with the third component (drug or fluorescent tag), which will certainly be in demand in pharmaceuticals and biomedical diagnostics. Full article
(This article belongs to the Special Issue The Self-Assembly and Design of Polyfunctional Nanosystems 2.0)
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15 pages, 3549 KB  
Article
Binding Modes of a Phenylpyridinium Styryl Fluorescent Dye with Cucurbiturils
by Adrien Paudics, Dóra Hessz, Márton Bojtár, Benjámin Gyarmati, András Szilágyi, Mihály Kállay, István Bitter and Miklós Kubinyi
Molecules 2020, 25(21), 5111; https://doi.org/10.3390/molecules25215111 - 3 Nov 2020
Cited by 9 | Viewed by 4718
Abstract
In order to explore how cucurbituril hosts accommodate an N-phenyl-pyridinium derivative guest, the complexation of the solvatochromic dye, 4-(4-(dimethylamino)styryl)-1-phenylpyridinium iodide (PhSt) with α,α′,δ,δ′-tetramethyl-cucurbit[6]uril (Me4CB6) and cucurbit[7]uril (CB7) was investigated by absorption spectroscopic, fluorescence and NMR experiments. In aqueous solutions, [...] Read more.
In order to explore how cucurbituril hosts accommodate an N-phenyl-pyridinium derivative guest, the complexation of the solvatochromic dye, 4-(4-(dimethylamino)styryl)-1-phenylpyridinium iodide (PhSt) with α,α′,δ,δ′-tetramethyl-cucurbit[6]uril (Me4CB6) and cucurbit[7]uril (CB7) was investigated by absorption spectroscopic, fluorescence and NMR experiments. In aqueous solutions, PhSt forms 1:1 complexes with both cucurbiturils, the complex with CB7 has a higher stability constant (Ka = 6.0 × 106 M−1) than the complex with Me4CB6 (Ka = 1.1 × 106 M−1). As revealed by NMR experiments and confirmed by theoretical calculations, CB7 encapsulates the whole phenylpyridinium entity of the PhSt cation guest, whereas the cavity of Me4CB6 includes only the phenyl ring, the pyridinium ring is bound to the carbonyl rim of the host. The binding of PhSt to cucurbiturils is accompanied by a strong enhancement of the fluorescence quantum yield due to the blocking of the deactivation through a twisted intramolecular charge transfer (TICT) state. The TICT mechanism in PhSt was characterized by fluorescence experiments in polyethylene glycol (PEG) solvents of different viscosities. The PhSt-CB7 system was tested as a fluorescence indicator displacement (FID) assay, and it recognized trimethyl-lysine selectively over other lysine derivatives. Full article
(This article belongs to the Special Issue Molecular Recognition and Self-Assembly in Chemistry and Medicine)
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15 pages, 4599 KB  
Article
White Light Emission by Simultaneous One Pot Encapsulation of Dyes into One-Dimensional Channelled Aluminophosphate
by Rebeca Sola-Llano, Ainhoa Oliden-Sánchez, Almudena Alfayate, Luis Gómez-Hortigüela, Joaquín Pérez-Pariente, Teresa Arbeloa, Johan Hofkens, Eduard Fron and Virginia Martínez-Martínez
Nanomaterials 2020, 10(6), 1173; https://doi.org/10.3390/nano10061173 - 16 Jun 2020
Cited by 5 | Viewed by 3356
Abstract
By simultaneous occlusion of rationally chosen dyes, emitting in the blue, green and red region of the electromagnetic spectrum, into the one-dimensional channels of a magnesium-aluminophosphate with AEL-zeolitic type structure, MgAPO-11, a solid-state system with efficient white light emission under UV excitation, was [...] Read more.
By simultaneous occlusion of rationally chosen dyes, emitting in the blue, green and red region of the electromagnetic spectrum, into the one-dimensional channels of a magnesium-aluminophosphate with AEL-zeolitic type structure, MgAPO-11, a solid-state system with efficient white light emission under UV excitation, was achieved. The dyes herein selected—acridine (AC), pyronin Y (PY), and hemicyanine LDS722—ensure overall a good match between their molecular sizes and the MgAPO-11 channel dimensions. The occlusion was carried out via the crystallization inclusion method, in a suitable proportion of the three dyes to render efficient white fluorescence systems by means of fine-tuned FRET (fluorescence resonance energy transfer) energy transfer processes. The FRET processes are thoroughly examined by the analysis of fluorescence decay traces using the femtosecond fluorescence up-conversion technique. Full article
(This article belongs to the Special Issue Photoactive Nanomaterials)
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28 pages, 1691 KB  
Review
Supramolecular Carotenoid Complexes of Enhanced Solubility and Stability—The Way of Bioavailability Improvement
by A. Ligia Focsan, Nikolay E. Polyakov and Lowell D. Kispert
Molecules 2019, 24(21), 3947; https://doi.org/10.3390/molecules24213947 - 31 Oct 2019
Cited by 70 | Viewed by 7327
Abstract
Carotenoids are natural dyes and antioxidants widely used in food processing and in therapeutic formulations. However, their practical application is restricted by their high sensitivity to external factors such as heat, light, oxygen, metal ions and processing conditions, as well as by extremely [...] Read more.
Carotenoids are natural dyes and antioxidants widely used in food processing and in therapeutic formulations. However, their practical application is restricted by their high sensitivity to external factors such as heat, light, oxygen, metal ions and processing conditions, as well as by extremely low water solubility. Various approaches have been developed to overcome these problems. In particular, it was demonstrated that application of supramolecular complexes of “host-guest” type with water-soluble nanoparticles allows minimizing the abovementioned disadvantages. From this point of view, nanoencapsulation of carotenoids is an effective strategy to improve their stability during storage and food processing. Also, nanoencapsulation enhances bioavailability of carotenoids via modulating their release kinetics from the delivery system, influencing the solubility and absorption. In the present paper, we present the state of the art of carotenoid nanoencapsulation and summarize the data obtained during last five years on preparation, analysis and reactivity of carotenoids encapsulated into various nanoparticles. The possible mechanisms of carotenoids bioavailability enhancement by multifunctional delivery systems are also discussed. Full article
(This article belongs to the Special Issue Carotenoids)
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