Search Results (1,733)

Nitrogen is an essential element for plant growth, and low nitrogen stress significantly restricts crop yield. Therefore, cultivating crop varieties that are tolerant to low nitrogen is crucial for agricultural production. The AT-hook motif nuclear localization protein (AHL) family is vital for plant stress resistance. To investigate the potential regulatory mechanisms of the AHL family in maize under low nitrogen stress, 35 ZmAHL genes were identified from the maize genome using bioinformatics methods. The results indicated that these genes encode proteins with lengths ranging from 203 to 573 amino acids, with relative molecular weights between 20.68 and 59.68 kDa, and they are unevenly distributed across 10 chromosomes. Most proteins encoded by these genes are alkaline hydrophilic proteins, primarily localized in the nucleus. Family expansion occurred through tandem and fragment repeats, which exhibited evolutionary conservation with rice homologous genes. Transcriptome analysis revealed that the majority of ZmAHL genes in drought-tolerant maize inbred lines were significantly up-regulated under drought and low nitrogen stress, with the ZmAHL10 gene displaying the most pronounced response to low nitrogen conditions. Experiments involving transgenic Arabidopsis thaliana further confirmed that the growth status, nitrogen uptake, and photosynthetic pigment content of ZmAHL10 overexpression strains under low nitrogen conditions were superior to those of the wild type, while the mutant exhibited significant growth inhibition. Overall, this study delineated the fundamental characteristics of the maize ZmAHL gene family and established that ZmAHL10 enhances low nitrogen tolerance in plants by improving nitrogen absorption capacity and maintaining the stability of the photosynthetic system. This research provides candidate genes and a theoretical foundation for the molecular breeding of maize with enhanced low nitrogen tolerance. Full article

Epigenetic diversity contributes to phenotypic plasticity and environmental responsiveness in Citrus spp. In this work, genome-wide DNA methylation was analyzed in 49 accessions representing six Citrus species, hybrids, varieties, and cultivars from the Greek National Germplasm Collection. Substantial variation in global DNA methylation was detected, while the epigenetic diversity indices did not differ significantly among taxa. The highest values were observed in Citrus × aurantium var. sinensis (orange) varieties (P_epi = 77.33%, Na = 1.55, h = 0.14, I_epi = 0.24), whereas the lowest were recorded in Citrus × aurantifolia (lime) (P_epi = 18.67%, Na = 0.37, h = 0.09, I_epi = 0.13), reflecting potential methylation restructuring impacted by hybridization and selection. Epigenetic and genetic diversity were significantly different. Principal coordinate analyses (PCoA) of epigenetic data revealed limited concordance to taxonomy, except for unmethylated loci, the latter exhibiting similar data to genetic (SSR) results in which groups reflected the taxonomic genealogy. Epigenetic and genetic distances were uncoupled, and associations between epigenetic diversity (P_epi, h, I_epi) and traits directly or indirectly related to fitness (fruit weight, dry matter content, ascorbic acid concentration), were weak. These findings indicate that epigenetic diversity represents an independent layer of variation in Citrus germplasm with potential relevance for breeding, conservation and environmental resilience. Full article

Hypoxia-inducible factor (HIF) is recognized as a key transcription factor via regulating a variety of molecular responses to hypoxia, although the details are still unclear. In this study, based on bioinformatics analysis, the expression of the HIF-1α gene in T. castaneum (TcHIF-1α) under hypoxic treatments was determined. After TcHIF-1α knockdown by injecting dsRNA, larval mortality, the expression levels of oxidative stress-related genes, and enzymatic activities were measured; DNA damage was also evaluated through single cell gel electrophoresis. The result indicated that TcHIF-1α is highly conserved in structure. TcHIF-1α exhibited distinct temporal patterns, with a peak after 72 h of exposure to 2% O₂. Following TcHIF-1α knockdown, a significant increase in larval mortality (17.44 ± 5.91%) and moderate DNA damage level was found. This might be accompanied by ROS accumulation, lipid peroxidation (LPO), and suppression of antioxidant enzymatic activities. The expression of genes involved in ROS synthesis (e.g., NOX) was significantly upregulated, whereas genes responsible for mitigating oxidative stress (e.g., OGG1, XRCC1, PARP1, SOD1a) were markedly downregulated. These findings elucidate the critical role of HIF-1α in insect hypoxia adaptation by regulating the antioxidative stress, highlighting its potential as a promising target for developing novel pest control strategies. Full article

TCP transcription factors constitute a key regulatory family in plants, playing crucial roles in plant growth and development. Although this gene family has been extensively studied across diverse plant species, research in Gypsophila paniculata remains limited. Through genome-wide identification and analysis, this study identified 17 GpTCP in G. paniculata. Our analysis revealed that all GpTCP proteins contain a conserved TCP domain, with subcellular localization predictions indicating nuclear localization. Promoter analysis identified multiple cis-regulatory elements associated with plant organ development and growth regulation. Chromosomal synteny studies showed that gene expansion within the G. paniculata TCP gene family occurred after subfamily differentiation. Over-expression of GpTCP10 in Arabidopsis thaliana caused root development inhibition, leaf curling, smaller flowers, and yellowing of flowers. Further studies showed that in two normally growing G. paniculata varieties with different flower sizes, GpTCP10 was specifically expressed in leaf and floral tissues, with significantly higher expression levels in the smaller-flowered G. paniculata. These findings reveal the evolutionary characteristics of the TCP family in G. paniculata, and highlight the role of GpTCP10 in regulating organ growth and development in transgenic Arabidopsis thaliana and floral organ size in G. paniculata. Full article

Screening potato germplasm for low nitrogen (LN) tolerance is essential for improving nitrogen use efficiency and agricultural sustainability. A set of 156 potato genotypes from diverse sources—including the International Potato Center (CIP), the National Potato Germplasm Repository (CAAS), and varieties and lines bred by the Qinghai Academy of Agriculture and Forestry Sciences—was evaluated under optimal (60 mmol·L⁻¹) and low (3 mmol·L⁻¹) nitrogen conditions using tissue culture. Nine traits related to growth, nitrogen accumulation, and nitrogen use efficiency were measured. Under LN stress, nitrogen physiological efficiency (NPE), uptake efficiency (NUpE), and utilization efficiency (NUE) increased, while most growth-related traits declined. Considerable variation was observed in fresh weight (FW), dry weight (DW), nitrogen accumulation (NA), and NUE, with coefficients of variation ranging from 0.38 to 0.40 under LN and 0.17 to 0.42 under ON. Principal component analysis identified NA and NUpE as the primary contributors to phenotypic variation. Based on comprehensive D-values from cluster analysis, the genotypes were classified into five tolerance groups: Type I—(strong low-nitrogen tolerant (13 accessions); Type II—low-nitrogen tolerant (66 accessions); Type III—moderate low-nitrogen tolerant (36 accessions); Type IV—low-nitrogen sensitive (24 accessions); and Type V—highly low-nitrogen sensitive (17 accessions). Physiological validation revealed two distinct adaptive strategies: a nitrogen conservation strategy (Type I), characterized by high NA and nitrogen content (NC) alongside moderate physiological efficiency, and an efficiency-driven compensation strategy (Types II, IV, and V), marked by low NA and NC but high physiological efficiency. The congruence between multivariate clustering and subsequent physiological measurements confirms that this classification effectively captures genotypic differences in low nitrogen tolerance. Thirteen highly LN-tolerant genotypes—including PIMPERNEL, Favorita, and Spunta—were identified as promising genetic resources for breeding nitrogen-efficient potato cultivars. This tissue culture-based screening method provides a practical tool for evaluating nitrogen tolerance in plants and supports sustainable potato production under limited nitrogen availability. Full article

The Dof transcription factor family plays crucial roles in plant growth and stress responses. In this study, we identified 24 Dof genes (CcDof1–CcDof24) from the genome of Citrus clementina (Hort. ex Tan.). Phylogenetic analysis classified these proteins into six distinct clades, revealing evolutionary conservation with Dof members from Arabidopsis and tomato. Analysis of gene structure and conserved motifs showed that most CcDof genes are intronless or contain only a few introns, and their motif compositions are largely consistent with their phylogenetic relationships. Promoter analysis revealed a variety of cis-regulatory elements associated with light responsiveness, hormone signaling, and abiotic/biotic stress responses. Expression profiling demonstrated that CcDof genes exhibit tissue-specific expression patterns and are differentially regulated by various phytohormones (including ABA, SA, GA, and MeJA), low temperature stress, and infection by Phytophthora parasitica. Notably, transient overexpression of CcDof4 and CcDof6 in citrus leaves significantly enhanced resistance to P. parasitica, accompanied by upregulation of SA pathway markers NPR1 and PR1. Our findings provide a systematic characterization of the CcDof family and highlight the important roles of CcDof4 and CcDof6 in mediating citrus disease resistance, likely through modulation of the SA signaling pathway. Full article

The Skewed5 Similar (SKS) genes play a crucial role in plant growth and development, as well as in responding to abiotic stress, by regulating cell wall remodeling and maintaining reactive oxygen species (ROS) homeostasis. The SKS gene family has not yet been thoroughly studied in soybean. We conducted a comprehensive genome-wide analysis of 88 GmSKS genes, systematically elucidating their gene structures, conserved protein domains, collinearity relationships, and phylogenetic relationships, to identify potential candidate genes associated with soybean tolerance to salt stress. The GmSKS genes are distributed across 18 chromosomes, and the expansion of this gene family is primarily attributed to the combined effects of tandem duplications and segmental duplications. Different tissue-specific expression patterns among GmSKS members were identified using expression profiling. Analysis of cis-regulatory elements further revealed that the promoter region may be involved in plant hormone signaling pathways and responses to abiotic stress. Furthermore, quantitative reverse transcription PCR (qRT-PCR) analysis showed that 21 of the 22 examined GmSKS genes were significantly upregulated under salt stress, while one was significantly downregulated. This expression pattern may be linked to salt tolerance mechanisms in soybean under stress conditions. Haplotype and selection trend analyses of GmSKSs revealed that varieties carrying GmSKS5^1123G, GmSKS22^1727G, GmSKS43^50T and GmSKS71^1213T are highly enriched in cultivated soybeans and have undergone artificial selection. This study provides basic information for the identification of salt stress-responsive gene resources of GmSKS family genes, and provides novel theoretical insights for the functional identification and cloning of soybean salt tolerance-related genes. Full article

Extra virgin olive oils obtained from the Ayvalık, Memecik, Gemlik, Çekişte, and Sarı Ulak Turkish cultivars were evaluated to determine their chemical composition, quality classification, authenticity indicators, and sensory characteristics. Standard quality parameters, including free fatty acidity, peroxide value, and ultraviolet absorbance (K232, K270), were analyzed in accordance with International Olive Council (IOC) regulations. The majority of the samples met the criteria for extra virgin olive oil. The oleic acid content varied by variety and region, with Ayvalık and Memecik showing notably high levels. Sterol profile analyses revealed distinctive chemical markers that indicate authenticity and quality. Sensory analysis results showed that regional differences had a significant impact on aroma, taste, and overall acceptability. Oils from Ayvalık and Memecik received high scores for positive sensory attributes such as fruitiness, bitterness, and pungency. The results show that the chemical and sensory qualities of olive oil are directly influenced by both genetic diversity and growing conditions, which underscores the importance of conserving local varieties and promoting regional production methods. Full article

(1) Background: The safety of antioxidants (AOs) in disposable biodegradable tableware products remains insufficiently understood. (2) Methods: The migration of 20 AOs from 39 disposable biodegradable tableware under multiple usage conditions was investigated by Ultra Performance Liquid Chromatography-Tandem Mass Spectrometry. Their potential exposure risks were evaluated using three risk assessment frameworks (EU, FDA, and Monte Carlo simulation). (3) Results: Ten AOs were detected in 95% ethanol, with Irganox 1010 showing the highest migration (0.29 ± 0.62 mg/kg). Starch-based products exhibited a greater variety and higher migration of AOs compared to PLA-based and fiber-based products. Food simulant type, temperature, and time exerted a more significant effect on AO migration than microwave and ultraviolet treatments. An analysis method for six typical AOs in soybean oil using freezing degreasing was established, which demonstrated good recoveries (77.6–110.3%) and relative standard deviations (1.7–14.7%). Four AOs were detected in soybean oil, with Irganox 1010 showing the highest migration (603.7 × 10⁻³ mg/kg). Utilizing high-percentile conservative exposure scenarios derived from Monte Carlo simulation, Irganox 1010 may pose a health risk to humans under high-dose exposure in soybean oil. (4) Conclusions: This study provides a basis for the safety evaluation of AOs in disposable biodegradable tableware. Full article

Introduction: Pelvic floor disorders (PFDs) are a very widespread clinical phenomenon and are known to affect millions of women worldwide, significantly impairing their quality of life. New technologies and innovations such as electrotherapy and photobiostimulation are currently revolutionizing what concerns conservative treatment, allowing clinicians to tailor therapy to every woman. The aim of this study was to evaluate the feasibility of use of electrotherapy and photobiostimulation in PFD management and the initial results of treatment in clinical practice. Methods: This prospective study (IRB code: GSM-RF 2025) aimed to analyze the impact of the innovative DAFNE system to treat PFDs through electrotherapy and photobiostimulation. We enrolled patients with mild pelvic organ prolapse and stress urinary incontinence who desired a conservative treatment for their conditions. The following validated scales were used for assessing baseline quality of life before and after treatment: Urinary Distress Inventory-6 (UDI-6), Pelvic Organ Prolapse Distress Inventory-6 (POPDI-6), Female Sexual Function Index-6 (FSFI-6), 0–100 VAS Scale, and Vaginal Health Index. Electrotherapy was delivered through 4 gold rings, providing Functional Electrical Stimulation (FES), Transcutaneous Electrical Nerve Stimulation (TENS) and/or Microcurrent Electrical Neuromuscular Stimulation (MENS). The photobiostimulation system consisted of 24 LEDs per wavelength (420 nm UVA; 630 nm RED; 870 nm NIR/INFRARED) positioned at 360° along the entire length of the handpiece for antimicrobial purposes, microcirculation improvement, and anti-inflammatory action. The cycle of treatment consisted of 3–5 sessions, according to necessity. Overall improvement was measured through the Patient Global Impression of Improvement (PGI-I). Statistical analysis was performed using Student’s t-Test. A value of p < 0.05 was considered as significant. Results: In the period of interest, 32 women were treated with the DAFNE system. The mean age was 57.0 ± 16.6 years. Indications for treatment were stress urinary incontinence (16/32), mild pelvic organ prolapse (14/32), or both (2/32). The mean number of treatments per patient was 4. Quality of life improved as a consequence of the treatment according to the considered scales. Specifically, 87.5% of patients considered themselves improved. Conclusions: The DAFNE system has been successful in managing mild pelvic organ prolapse and stress urinary incontinence, improving quality of life scores. Embracing new technologies such as electrotherapy and photobiostimulation appears to be successful in conservatively managing a variety of PFDs. Full article

The present study highlights the genetic relationships among 52 grapevine varieties, including traditional and newly developed Romanian varieties and international reference cultivars, held in a small didactic ampelographic collection in Iaşi, Romania, and their genetic diversity, assessed using multivariate analysis. Twelve nuclear simple sequence repeat (SSR) markers, including nine OIV-standard descriptors, were used for genetic profiling. A total of 102 alleles were identified, with an average of 8.5 alleles per locus. The mean polymorphic information content (PIC) of 0.779 confirmed the high discriminatory power of the chosen markers. NJ dendrogram and PCoA yielded mostly similar results but did not clearly differentiate genotypes based on the selected criteria for genotype comparison (usage or historical status). STRUCTURE analysis assigned genotypes to SSR-group 1 (23.07%) and SSR-group 2 (34.61%) under K = 2 and a Q-value threshold of 0.85. The high proportion of admixed genotypes (42.32%) may reflect complex pedigrees and the migration of grapevine varieties across a wider territory surrounding Romania. The present research may serve as a starting point for future studies in Romania on the genetic structure and parental analysis of grapevine varieties held in small didactic collections, aiming to characterize and hold valuable grapevine varieties under secure conditions for future generations. Full article

Climate-driven droughts pose major threats to rainfed farming worldwide. To address these impacts, smart agricultural approaches focusing on conservation practices (CPs) have been widely recommended by institutions such as the Food and Agriculture Organization of the United Nations (FAO), the World Food Programme (WFP), and the International Fund for Agricultural Development (IFAD), among others. This systematic review synthesizes evidence on CPs for climate-driven drought adaptation and the barriers to their adoption in southern Mozambique, where drought is predominant. Following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) 2020 guidelines, a comprehensive search across four academic databases retrieved 595 records (2000–April 2025), of which 23 were peer-reviewed studies. Data was extracted and analyzed using Microsoft Excel 365 and NVivo 15. As a result, five major CPs were identified: (i) Minimum tillage; (ii) Mulching and residue retention; (iii) Maize–legume (cowpea, groundnuts, pigeon pea, and soybeans) intercropping and crop rotation; (iv) Drought-tolerant maize varieties; and (v) indigenous practices. The systematic review has shown that minimum tillage was associated with 89–90% increase in maize and legume yields; Mulching expands maize yields by 24–59%; intercropping increases maize and legume yields by more than 30%; drought tolerant maize varieties expand yields by 26–46%; and local practices support farming continuity and contribute to resilience, although quantitative yield effects were not reported, with adoption ranging from 75–100%. These findings suggest that minimum tillage and intercropping/crop rotation are the most effective CPs in enhancing yield and resilience. Despite their potential, the adoption is generally low (average around 40%, with some as low as 7–16% for minimum tillage). Reasons for limited uptake include economic, cultural, institutional, biophysical, and technological barriers. These findings highlight the need for integrated policy approaches that combine climate-smart agriculture with indigenous knowledge in southern Mozambique. Full article

Background: Tracheal rupture is a rare, life-threatening condition that may follow blunt trauma, intubation, and, less commonly, esophageal instrumentation. The diagnosis may be challenging due to the subtle, delayed, and wide variety of symptoms. We present a unique case of delayed tracheal rupture secondary to iatrogenic esophageal perforation, presenting months later with a cervical neck insufflation on Valsalva, a novel clinical sign that has not been previously described in the literature. Case Presentation: A 44-year-old male initially presented with esophageal food impactation. Following endoscopic removal attempts, he developed signs consistent with esophageal perforation and was managed conservatively. In follow-up, he reported persistent neck discomfort, facial numbness, and the ability to insufflate the right side of his neck while doing a Valsalva. Flexible bronchoscopy and retrospective review of imaging revealed a proximal posterior tracheal defect, initially misinterpreted as a tracheal diverticulum. Surgical exploration confirmed a 6 cm dehiscence between the membranous trachea and the anterior wall of the esophagus. The defect was repaired using regional muscle flaps with tissue sealant reinforcement. Postoperatively, the patient had complete symptom resolution and no recurrence of neck insufflation. Conclusions: The case underscores the importance of maintaining a high index of suspicion for tracheal injury in patients with persistent or atypical symptoms following esophageal perforation or instrumentation. To our knowledge, we have described a novel clinical finding of neck insufflation upon Valsalva for diagnosing tracheal rupture. Full article

Populus euphratica (P. euphratica) is a dominant tree species in the arid and semi-arid regions along the main stem of the Tarim River. This study aims to explore the response of microbial communities in the rhizosphere soil of P. euphratica to varying groundwater depths (GWD) and to elucidate the ecological functions of key microbial groups in drought resistance. We established three groundwater depth levels (3.8 m, 5.4 m, and 7.35 m) and employed metagenomic sequencing technology to systematically analyze the topological characteristics of functional microbial community networks, as well as the types and quantities of key microbial groups in the rhizosphere soil of P. euphratica under different GWD conditions. The results indicate that compared to GWDs of 3.8 m and 7.35 m, the average degree and graph density of microbial communities in the rhizosphere soil of P. euphratica at a depth of 5.4 m are the highest. This suggests that at a GWD of 5.4 m, the connectivity and stability of the microbial network structure in the rhizosphere soil of P. euphratica are significantly enhanced. Analysis of the Zi-Pi values within the microbial network structure reveals that, compared to GWDs of 3.8 m and 7.35 m, a depth of 5.4 m supports the greatest variety and quantity of key microbial species in the rhizosphere soil of P. euphratica. The four connecting nodes identified are Actinophytocola, Haladaptatus, Devosia and Pseudonocardia. Spearman correlation analysis demonstrates that the relative abundance of the key bacterial genus Mesorhizobium in the rhizosphere soil of P. euphratica at different GWD is significantly positively correlated with soil catalase (CAT) and urease (UE) activity. Furthermore, the relative abundance of the key bacterial genus Pseudonocardia shows a significant positive correlation with soil total nitrogen (TN) and ammonium nitrogen (NH₄⁺-N) (p < 0.05). The relative abundance of the key bacterial genus Devosia exhibits a highly significant positive correlation with soil water content (SWC) (p < 0.01) and a significant negative correlation with soil NH₄⁺-N (p < 0.05). Additionally, the relative abundance of Devosia is significantly positively correlated with soil CAT (p < 0.05). This study provides a theoretical foundation for the conservation of desert poplar forests in arid regions and for the identification and cultivation of specific key microbial communities in the rhizosphere soil of P. euphratica. Full article

We study a variety of stochastic contact processes—directly related to models of rumor and disease spreading—from the viewpoint of their constants of motion, either exact or approximated. As in deterministic systems, constants of motion in stochastic dynamics make it possible to reduce the number of relevant variables, thereby confining the set of accessible states and facilitating analytical treatment. For processes of rumor propagation based on the Maki–Thompson model, we show how to construct exact constants of motion as linear combinations of conserved quantities in each elementary contact event, and how they relate to the constants of motion of the corresponding mean-field equations, which are obtained as the continuous-time, large-size limit of the stochastic process. For SIR epidemic models, both in homogeneous systems and on heterogeneous networks, we find that a similar procedure produces approximate constants of motion, whose average value is preserved along the evolution. We also give examples of exact and approximate constants of motion built as nonlinear combinations of the relevant variables, whose expressions are suggested by their mean-field counterparts. Full article