Search Results (131)

Listeria monocytogenes is a ubiquitous Gram-positive bacterium responsible for listeriosis, a foodborne zoonotic disease affecting humans and animals. Although infection in immunocompetent individuals is often asymptomatic or limited to mild self-limiting gastroenteritis, Listeria monocytogenes may cause severe invasive disease in vulnerable groups, including pregnant women, neonates, elderly individuals, and immunocompromised patients. Although the incidence of listeriosis is relatively low compared with many other foodborne pathogens, the high hospitalization and mortality rates associated with clinical cases make this bacterium a major concern for food safety and public health. The evolutionary success of L. monocytogenes reflects the interaction between a conserved core genome and a dynamic accessory genome shaped by horizontal gene transfer (HGT), ecological selection, and expansion of specific clones. Transient intestinal carriage in humans and animals, potentially influenced by gut microbiome composition, creates ecological interfaces where plasmids, transposons, prophages, and integrative conjugative elements contribute to the exchange of antimicrobial resistance determinants, virulence factors, and stress tolerance systems. Virulence diversification is further influenced by the differential distribution of pathogenicity islands such as LIPI-1, LIPI-3, and LIPI-4 across specific clonal lineages. These evolutionary processes occur across interconnected farm, food-production, environmental, and clinical ecosystems consistent with the One Health framework. Advances in whole-genome sequencing have clarified lineage-specific gene flow, expansion of specific clones, and the dynamics of the resistome and mobilome in L. monocytogenes populations. This narrative review aims to synthesize current knowledge on the mobile genetic elements and ecological interfaces that shape horizontal gene transfer in L. monocytogenes. Its novelty lies in integrating antimicrobial resistance, virulence-associated genomic islands, stress adaptation, and gut microbiome-mediated selection within a One Health and metapopulation framework. The main message of this review is that HGT should be interpreted as a context-dependent contributor to L. monocytogenes adaptation, acting together with clonal background, ecological selection, and mobile genetic elements. Full article

Background: Non-invasive prenatal testing (NIPT) based on analysis of Cell-Free Fetal DNA has transformed screening for common aneuploidies and is increasingly extended to genome-wide detection of copy number variants (CNVs). However, CNV detection remains constrained by analytical limitations and biological signal complexity. Methods: This review evaluates the analytical validity, biological constraints, and clinical interpretation challenges of CNV detection by NIPT, framing it as a probabilistic genomic inference rather than a direct measure of fetal copy number. Results: Performance depends on sequencing depth, bin resolution, fetal fraction, guanine–cytosine correction, and reference modeling, leading to variable detection thresholds. The predominantly placental origin of cfDNA introduces discordance through Confined Placental Mosaicism, post-zygotic events, and clonal variation. Maternal CNVs, mosaicism, vanishing twin, and occult malignancy further complicate interpretation and may cause false positives. Clinical validity is heterogeneous, with positive predictive value dependent on CNV size, genomic context, and prevalence. Reporting practices remain inconsistent. Conclusions: CNV detection by NIPT is fundamentally limited by interpretation of a composite maternal–placental signal. Progress requires improved tissue-of-origin discrimination, multi-omic integration, and standardized reporting to ensure responsible clinical implementation. Full article

Global cultivation of Artemisia annua L. for the isolation of artemisinin as the current best antimalarial therapeutic mainly takes place on large plantations, but there is an increasing cultivation of the plant for more local use and the supplement market. Phytochemical consistency is a major concern among growers and also regulatory bodies. Long-term cultivation and harvest of field-grown clonal A. annua have not been measured for consistency and between different geographical regions. Here, artemisinin and other phytochemicals were measured in clonal A. annua grown in two different US geographical locations. Five Florida (FL) and nine Massachusetts (MA) crops were analyzed for artemisinin and flavonoids. TLC (thin layer chromatography) profiles and mass spectrometry analysis were also compared. Artemisinin content dropped by about 10% after transfer from MA to FL, but the flavonoid content increased 2.6-fold. Artemisinin and flavonoid profiles were relatively consistent within each location, but flavonoids differed significantly between the two locations. We also analyzed the artemisinin content of several US commercial A. annua and artemisinin supplements. Despite manufacturer claims, about half the samples contained no detectable artemisinin. Together, this study enhances the knowledge about A. annua field crops and Artemisia/artemisinin supplements being used globally and in the US for therapeutic purposes. Full article

Duckweeds are minute, fast-growing monocot aquatic plants that propagate clonally and combine high biomass productivity with a valuable biochemical composition (high-quality proteins, a favorable polyunsaturated fatty acid profile, and starch-rich tissues) and efficient nutrient uptake, making them attractive for feed/food, bioenergy, and wastewater-based phyto-bioremediation. Temperature is a key factor shaping duckweed growth, and selecting clones that perform well within specific thermal ranges can improve cultivation across different applications. Here, we screened 97 clones from the genera Spirodela, Landoltia, and Lemna, including the hybrids Lemna × japonica and Lemna × mediterranea, under warm (WC; 30/25 °C) and relative cool (CC; 20/16 °C) conditions. Relative growth rate (RGR) ranged from 0.150 to 0.338 day⁻¹ under WC and from 0.113 to 0.318 day⁻¹ under CC, revealing strong interspecific and intraspecific variation. While WC generally promoted higher growth than CC, notable exceptions occurred at both interspecific and intraspecific levels. Tests under more extreme regimes (EWC; 35/30 °C; ECC; 16/12 °C) confirmed strong clone-specific responses, with some clones maintaining or improving growth under EWC relative to WC, whereas ECC generally reduced growth relative to CC. Climatic provenance was a weak predictor of performance, showing limited correspondence between RGR and mean annual temperature at the site of origin. Overall, these results highlight the value of within-species phenotyping across relevant temperature regimes to identify high-performing duckweed material for applied use. Full article

Systemic lupus erythematosus (SLE) is an autoimmune disease characterized by immune dysregulation and multi-organ damage. Abnormal B cell activation and autoantibody production constitute the core pathological mechanism of SLE. However, the proportion, BCR pairing types, clonal evolution patterns, and transcriptomic features of dual BCR B cells in SLE remain incompletely elucidated. In this study, we employed single-cell RNA sequencing (scRNA-seq) combined with single-cell B cell receptor repertoire sequencing (scBCR-seq) to preliminarily analyze the proportion and characteristics of dual BCR B cells in SLE model mice (MRL/Lpr and SLE.Yaa) as well as in peripheral blood from SLE patients. The results showed: (1) Compared with control groups, the proportion of dual BCR B cells in SLE model mice and patients exhibited a decreasing trend, whereas the diversity of the CDR3 repertoire decreased and clonality increased. Increased clonal sharing was observed between single BCR B cells and dual BCR B cells. The main pairing types of dual BCR B cells were H + κ1 + κ2, H1 + H2 + κ, and H1 + H2 + κ + λ, with preferential utilization of autoimmunity-associated V gene families such as IGHV4-34, and high expression of IGHG subtypes. (2) Tracking analysis of B cell receptor clonality and effector molecule expression revealed that in SLE, dual BCR B cells tend to enrich in IFN-α/γ responses, TNF-NFκB inflammation, and complement pathways, and highly express interferon-related genes such as Ly6a, Isg15, MX1, and IFI6. (3) In both single BCR B and dual BCR B cells from SLE patients, the proportion of the naïve B cell subset decreased, whereas the proportions of plasma and Breg subsets increased and exhibited clonal expansion. SLE dual BCR Breg cells highly expressed IL10, HSPA1A, and others. This study is the first to reveal, at the high-throughput single-B-cell level, that the proportion, subset origin distribution, CDR3 repertoire composition, and effector molecule expression of dual BCR B cells display unique characteristics in SLE model mice and patients, providing baseline comparative data and novel research perspectives for further investigation into B cell effector functions and mechanisms in SLE patients. Full article

Diet is a modifiable factor that influences multiple pathways relevant to hematologic malignancy, including systemic inflammation, immune cell activity, gut microbiota composition, and cancer cell metabolism. Translation of preclinical findings into clinical practice for hematologic malignancies remains nascent, although momentum is building to evaluate dietary interventions as a component of supportive and disease-modifying care. This review examines the mechanistic rationale for dietary interventions across the spectrum of clonal hematologic disorders and synthesizes current clinical evidence. Anti-inflammatory dietary patterns, particularly the Mediterranean diet, have demonstrated reductions in pro-inflammatory cytokines and may attenuate the inflammatory milieu that fuels clonal expansion. Obesity, which elevates the risk of developing hematologic malignancies and worsens clinical outcomes in diseases such as acute lymphoblastic leukemia (ALL) and acute myeloid leukemia, may be addressed through calorie-restricted, low-fat, or plant-based dietary strategies. Gut microbiota dysbiosis induced by chemotherapy represents another target, with high-fiber and plant-based diets showing promise in restoring microbial diversity and potentially enhancing treatment efficacy. Early-phase clinical trials in multiple myeloma, acute lymphoblastic leukemia, and myeloproliferative neoplasms have established feasibility and yielded preliminary signals warranting larger confirmatory studies. Larger, rigorously designed trials are needed to establish dietary interventions as legitimate therapeutic tools in the management of hematologic malignancies. Full article

Globba bicolor Gagnep., an ornamental ginger of cultural importance in Thailand’s “Tak Bat Dok Mai” festival, faces conservation challenges due to climate change and slow natural propagation. Limited understanding of its cultivation and chemical composition further constrains sustainable utilization. This study provides the first integrated investigation of micropropagation using rhizome-derived explants under various combinations of exogenous hormones, acclimatization strategies, and comparative phytochemical profiling between wild and in vitro-propagated plants. An optimized clonal regeneration system was established from plantlets, with Murashige and Skoog (MS) medium containing 2.0 mg/L 6-benzylaminopurine (BA) and 0.5 mg/L 1-naphthaleneacetic acid (NAA), yielding the highest multiplication (9.10 shoots/explant and 12.40 roots/explant) after eight weeks of cultivation. During acclimatization, sand substrate proved superior, facilitating a 90% survival rate and enhanced physiological vigor. Comparative analysis revealed that while wild plants possessed significantly higher total phenolic (TPC) and total flavonoid (TFC) contents and antioxidant activities (DPPH, ABTS, and FRAP) than their in vitro counterparts, both sources maintained a rich diversity of chemical constituents. HPLC analysis identified cinnamic acid, rutin, and quercetin as major metabolites, while GC–MS detected 90 volatile compounds, with β-caryophyllene and β-pinene as predominant constituents. Notably, rhizomes of wild plants exhibited particularly high-value detections. To provide a rapid and non-destructive approach for linking chemical composition with antioxidant activity, FTIR-based chemometric models were applied, demonstrating high predictive accuracy (R²–cv = 0.9712–0.9862). These results provide a scientific foundation for the conservation and sustainable commercial utilization of G. bicolor as a potential source of bioactive natural products. Full article

Despite prolonged viral inhibition with combination antiretroviral therapy (ART), HIV-1 survives as genetically intact, replication-capable proviruses within durable CD4+ T-cell fractions, involving central memory, transitional memory, and stem cell-like memory populations, as well as within tissue-resident compartments including lymphoid follicles and gut-associated lymphoid tissue. Reservoir stability is preserved via clonal growth of infected cells and epigenetic processes that impose proviral transcriptional silencing. As a result, current therapeutic approaches seek to either directly alter proviral survival or to improve immune-driven elimination of infected cells. At the molecular level, investigational strategies such as CRISPR–Cas9 and CRISPR–Cas12 gene-editing systems are intended to remove or induce inactivating mutations inside embedded proviral DNA, as well as alter host entrance co-receptors such as CCR5 to provide cellular resistance to infection. In addition, pharmacologic latency regulation is being studied via histone deacetylase inhibitors, protein kinase C agonists, and bromodomain inhibitors to reverse latency, along with Tat inhibitors and other transcriptional repressors aimed to persistently silence proviral expression. Moreover, immunological techniques aim to counteract inefficient endogenous antiviral defenses. Broadly neutralizing antibodies with tailored Fc-driven effector functions are under examination for both neutralization and antibody-dependent cellular cytotoxicity. Therapeutic vaccine approaches seek to elevate polyfunctional HIV-specific CD8+ T-cell responses, while adoptive cellular approaches, involving CAR-T cells aiming HIV envelope epitopes, remain in early clinical research. Immune checkpoint blockade is also being investigated to reverse T-cell depletion inside reservoir-rich tissues. Nevertheless, the key obstacles continue to be the diverse reservoir composition, restricted tissue penetration, viral escape, and safety limitations. The molecular and translational obstacles that characterize attempts toward an HIV cure must be addressed through ongoing multidisciplinary research. Full article

Lower-grade gliomas (LGGs) often follow a relatively protracted clinical course; however, a substantial proportion eventually undergo malignant transformation to high-grade, treatment-refractory disease. This process has traditionally been interpreted in the context of stepwise histopathologic progression and recurrent genetic alterations. Increasing evidence, however, suggests that malignant transformation is more accurately understood as an evolutionary process shaped by the interplay among epigenetic constraints, cell-state plasticity, and selective pressures. In this review, we examine current evidence supporting a model in which early LGGs, particularly isocitrate dehydrogenase (IDH)-mutant tumors, are initially maintained in relatively restricted cellular states by metabolically imposed epigenetic programs, but progressively escape these constraints under the cumulative influence of therapy, hypoxia, immune remodeling, and genomic instability. We summarize recent advances demonstrating that progression from lower-grade to high-grade disease is accompanied by cell-state transitions characterized by altered lineage identity, acquisition of stem-like features, increased proliferative capacity, and adaptation to cellular stress. We further discuss how these transitions are reinforced by microenvironmental evolution, including vascular remodeling, extracellular matrix reorganization, and changes in immune composition, thereby creating conditions that favor clonal expansion, invasion, and therapeutic resistance. Particular attention is given to longitudinal, single-cell, and spatially resolved studies, which collectively indicate that malignant transformation is not a discrete event but a continuous process of evolutionary selection and phenotypic reprogramming. Finally, we discuss the translational implications of this framework for early risk stratification, biomarker development, and mechanism-based therapeutic intervention. By reframing malignant transformation in LGGs as a process of cell-state escape under persistent selective pressure, this review aims to provide an integrated view of glioma progression and to highlight new opportunities for precision monitoring and treatment. Full article

White clover (Trifolium repens L.) is a major legume in Mediterranean agroecosystems. This study systematically evaluates 15 autochthonous white clover populations from the Trikala region of Greece, focusing on chemical composition and derived nutritional indices relevant for germplasm characterization and breeding. Fifteen local populations were evaluated under controlled pot cultivation over two consecutive years. Clonal plants were harvested at the early flowering stage. Key traits—crude protein (CP), Ash, Fat, crude fibre (FIBRE), acid detergent fibre (ADF), neutral detergent fibre (NDF), digestible dry matter (DDM), dry matter intake (DMI), and relative feed value (RFV)—were measured. Combined ANOVA revealed significant differences among populations for all traits (p ≤ 0.001), while genotype × year interactions were present but generally minor compared to genotypic effects. Broad-sense heritability was high across most traits (H² = 90.8–99.4%), demonstrating strong genetic control. CP showed positive correlations with DDM, DMI, and RFV, whereas ADF and NDF were negatively correlated with intake and digestibility. Canonical and discriminant analyses showed that a reduced set of traits (CP, Ash, FIBRE, RFV) contributed strongly to differentiation among populations. Hierarchical clustering (heatmap) confirmed these groupings based on fibre and digestibility-related traits. Populations such as Dendrochori and Gorgogyri consistently showed favorable chemical and nutritional profiles, while Fiki and Dendrochori showed the highest stability across years. The present study highlights substantial genetic variability among local white clover populations and identifies trait structures of relevance for germplasm characterization. These findings enhance the characterization of genetic diversity in Trifolium repens and support its potential use in future breeding research under Mediterranean environments. Full article

Eastern deciduous forests are undergoing directional compositional shifts, marked by the progressive replacement of Quercus-dominated canopies with generalists and shade-tolerant taxa. These shifts are increasingly interpreted within a regeneration debt framework, in which canopy composition persists despite recruitment failure and regeneration mismatch in smaller size classes. We evaluated 30 years (1995–2025) of compositional and structural change in adjacent upland and cove forests on the southern Cumberland Plateau, Tennessee, using a permanent nested circular plot design to determine whether previously observed upland resistance reflects durable resilience or delayed demographic transition. Both habitats exhibited continued Quercus decline while remaining compositionally distinct. As documented in prior analyses, reductions in small-diameter stems were more pronounced in the cove forest, but now reveal demographic mismatches between canopy and regeneration layers in both habitats. Upland forests maintained a higher representation of species capable of basal sprouting and clonal growth via root suckering, indicating that vegetative regeneration buffered short-term demographic change. However, recruitment into larger size classes declined in both habitats, demonstrating that buffering facilitated by vegetative regeneration delayed but did not prevent the accumulation of regeneration debt. What appeared as differential resistance through 2014 is more accurately interpreted as temporal offset in regeneration debt accumulation. Full article

Early diagnosis of ovarian cancer remains one of the most important unmet needs in gynecologic oncology because survival is strongly stage-dependent and most patients still present with disseminated disease. Conventional non-invasive tools, particularly CA-125, transvaginal ultrasound, and composite triage algorithms, remain clinically useful but are limited by suboptimal sensitivity for stage I disease and by reduced specificity in premenopausal women and in benign inflammatory or endometriosis-associated conditions. Circulating tumor DNA (ctDNA) has therefore emerged as a candidate biomarker capable of extending liquid biopsy beyond conventional serology. In ovarian cancer, however, ctDNA implementation is constrained by low tumor shedding in early-stage disease, marked biologic heterogeneity across histotypes, clonal hematopoiesis-related background noise, and major pre-analytical and analytical sources of variability. This narrative review, informed by structured searches of PubMed, Scopus, and Web of Science, examines the evolving evidence for ctDNA mutations, methylation-based assays, multi-omic platforms, and machine-learning models across three distinct clinical contexts: population screening, preoperative triage of adnexal masses, and post-treatment assessment of molecular residual disease. We also discuss positive predictive value, false-positive harms, health-economic implications, standardization initiatives, and ongoing prospective studies. Overall, current evidence suggests that the most plausible near-term role for liquid biopsy in ovarian cancer is not as a universal stand-alone screening test, but as an integrated component of risk stratification and disease-monitoring frameworks that combine molecular signals with clinicopathologic and imaging data. Full article

The wine aromatic profile is influenced by complex interactions between grapevine genotype and enological practices. Thus, the aim of this study was to investigate the combined effects of grapevine clones and yeast strains on the volatile composition and sensory properties of wines produced from the Croatian indigenous variety Moslavac. Wines from five registered Moslavac clones (PUS-017, PUS-026, PUS-030A, PUS-087, and PUS-111) were produced using two commercially available yeast strains (Lalvin QA23 and Zymaflore Xarom). Significant effects of both clone and yeast strain were observed, particularly for yeast-derived compounds, such as isoamyl alcohol, phenylethyl alcohol, and medium-chain fatty acids. Ester production was generally enhanced by the Xarom yeast strain, although clone differences were also observed. Grape-derived volatile compounds differed significantly among clones, with wines from clones PUS-030A and PUS-087 having higher concentrations of norisoprenoids and terpenes, while PUS-017 wines consistently displayed lower concentrations of volatile compounds. Furthermore, PCA and MLF analyses revealed a clear differentiation between clones, with the yeast strain having a secondary modulatory effect. The sensory results were consistent with chemical data, demonstrating that clonal selection plays a key role in defining aromatic expression and typicity of Moslavac wines. Full article

Artemisia maritima holds potential applications in the rehabilitation of degraded environments, particularly in salt-affected areas, for biosaline agriculture aimed at biomass production for further valorization and green biotechnology. The aim of the present study was to investigate the response of A. maritima to alterations in soil chemical composition, including differences in mineral supply, the addition of various sodium salts, and contamination with several heavy metals (cadmium, lead, copper, manganese, zinc), in order to establish a scientific basis for further applied research. Under standard fertilization conditions, the growth of A. maritima plants was restrained by nitrogen deficiency. Surplus nitrogen enhanced mineral uptake and growth, especially for shoots, and stimulated clonal development. Low to moderate (50 and 100 mmol L⁻¹) NaNO₃ treatment significantly stimulated shoot growth, while Na₂HPO₄ and NaHCO₃ treatments exhibited the most adverse effects at 200 and 400 mmol L⁻¹, resulting in reduced growth and biomass, and even the deterioration of the aboveground parts. Chlorophyll fluorescence parameters served as reliable early indicators of the detrimental effects of salinity associated with individual anions. Shoot macronutrient levels remained unchanged for phosphorus and calcium, while nitrogen increased in nitrate treatments. Root mineral nutrient content was more susceptible to salinity, with significant changes observed for all macro- and micronutrients, varying depending on the specific element and anion type. The alterations in mineral nutrition observed for each anion treatment exhibited distinct characteristics. A. maritima plants demonstrated high tolerance to all heavy metals, with roots being more susceptible compared to shoots. At the shoot level, statistically significant growth inhibition was evident only for 1000 mg L⁻¹ lead and 1000 mg L⁻¹ zinc treatments. A. maritima plants can be characterized as high accumulators of cadmium, lead, manganese, and zinc, and as extreme accumulators of copper in shoots. Nitrophily, clonal expansion with a help of bud-bearing roots, and the ability to accumulate relatively high concentrations of mineral elements in shoots are among the important physiological characteristics of A. maritima plants, enabling them to exhibit high resilience in environmentally heterogeneous habitats. Full article

Walnut (Juglans regia L.) performance and sustainability are closely linked to soil–plant–microbe interactions; nowadays, the combined influence of edaphic context, plantation development and rootstock genotype on walnut-associated microbiomes remains insufficiently resolved. Here, we integrated soil physicochemical characterization, community-level physiological profiling and 16S rRNA gene amplicon sequencing across walnut plantations in four Spanish regions. The design included 14-year clonal stands (Galicia, Gerona, Toledo), an age gradient in Galicia (4, 9 and 14 years), and four rootstocks (MJ209, Vlach, own-rooted ‘Chandler’ and J. regia seedling) in the Córdoba plantation. At the community-level, rhizospheres exhibited higher overall metabolic activity, displaying substrate-specific functional fingerprints across regions. Regarding stand ages, a functional peak was observed at middle age, with a decline in richness and diversity with age. Moreover, rootstock genotype further modulated rhizosphere metabolic function. Sequencing supported compositional differences among regions, ages and rootstocks, identifying a bacterial core of Juglans spp. rhizosphere and detecting 36 putative Plant Growth-Promoting Rhizobacteria (PGPR) genera, suggesting a potential reservoir and possible uses in plant biotechnology. Overall, walnut-associated microbiomes are jointly structured by soil gradients, plantation development and rootstock genotype, supporting site and genotype-tailored microbiome management. Full article