Search Results (128)

This study examines a series of organic–inorganic crystal structures containing the periodate anion (IO₄⁻) to clarify the nature of the anion–anion interactions that are frequently referred to as halogen bonds. Our analysis demonstrates that, in many cases, IO₄⁻ does not develop an electrophilic σ-hole on the iodine center, even in the presence of organic cations, and therefore cannot reliably function as a halogen-bond donor. In its discrete (0D) form, the anion retains its character as a Lewis base. In crystal structures where extended architectures are observed—such as one-dimensional chains, two-dimensional layers, or three-dimensional cage-like assemblies—these structures arise predominantly from strong coulombic interactions with surrounding cations, as the interaction between the anions is intrinsically repulsive in the gas phase. Hydrogen bonding, together with other noncovalent interactions including chalcogen, tetrel, and/or pnictogen bonding, plays a dominant role in stabilizing the anionic arrangements and governing their structural organization. Full article

This study investigates anion–anion assemblies involving perhalate anions, XO₄⁻ (X = Cl, Br, I), in crystal structures retrieved from the Cambridge Structural Database to clarify the nature of the intermolecular interactions frequently interpreted as halogen bonds. Molecular electrostatic surface potential analysis demonstrates that isolated XO₄⁻ anions do not exhibit electrophilic σ-holes on the halogen or oxygen atoms along the O–X bond extensions, thereby precluding their role as conventional halogen- or chalcogen-bond donors. Gas-phase calculations further show that direct anion–anion assemblies are intrinsically repulsive and unstable in isolation. However, when dielectric screening is introduced through implicit solvation models, metastable dimeric and oligomeric arrangements consistent with crystallographic motifs become accessible. Complementary QTAIM, IGMH, NBO, and SAPT analyses show that the observed X···O and O···O contacts are weak, environment-assisted anti-electrostatic interactions arising from a combination of dielectric screening, polarization, dispersion, and donor–acceptor contributions. The results demonstrate that the structural organization of perhalate anions in crystalline environments is governed primarily by collective environmental and crystal-packing effects rather than intrinsic attractive interactions between isolated anions. Full article

The molecular electrostatic surface potential (MESP) has become a key theoretical tool for probing reactivity in chemical systems. It reveals electrophilic and nucleophilic regions on molecular surfaces, underpinning the understanding of noncovalent interactions such as hydrogen, triel, tetrel, pnictogen, chalcogen, halogen, matere, and aerogen bonding, among many others. These interactions, driven by Coulombic attraction, govern aggregation in molecular and supramolecular systems across solid, liquid, and gas phases. MESP applications span crystal engineering, polymers, biology, catalysis, photovoltaics, and drug discovery. While limitations exist—such as the arbitrariness in defining isodensity surfaces—its impact on advancing both theoretical and applied chemical research is substantial. This review outlines the conceptual foundations of MESP and highlights its broad relevance across the chemical sciences. Full article

We report a straightforward and versatile synthetic route to pyridinium-fused 1,3-selenazoles via the electrophilic cyclization of 2-pyridylselenyl chloride with alkynes. The reaction proceeds efficiently under mild conditions with representative terminal and internal alkynes. While the cyclization exhibits high regioselectivity favoring the 3-substituted isomer for most substrates, reactions with 2-pyridyl- and 2-quinolylacetylenes yield regioisomeric mixtures. DFT calculations rationalize this divergence, revealing a competition between kinetic and thermodynamic control; the 3-isomer is kinetically favored, while the 2-isomer is thermodynamically stabilized by an ancillary chalcogen bond between the selenium atom and the pyridine nitrogen of the alkyne substituent. Molecular structures were confirmed by single-crystal X-ray diffraction, and the non-covalent interactions governing supramolecular assembly in the solid state were rigorously analyzed using MEP surfaces, the QTAIM, and NBO analysis. Antifungal evaluation identified several compounds with notable activity against phytopathogenic fungi, highlighting the potential of this novel heterocyclic scaffold in agrochemical applications. Full article

Bent-shaped liquid crystal (LC) dimers, trimers, and oligomers are intriguing because of their unique liquid crystallinities, which have gained further impetus after the identification of the twist-bend nematic (N_TB) phase in these molecules. LC trimers exhibiting the N_TB phase still remain relatively rare compared to the predominant LC dimers. We report the first homologs of selenium-linked LC trimers, 4,4′-bis[ω-(4-cyanobiphenyl-4′-ylseleno)alkoxy]biphenyls (CBSenOBOnSeCB) with carbon numbers in the alkyl-chain spacers, n = 7 or 9). Polarizing optical microscopy, differential scanning calorimetry, and X-ray diffraction (XRD) measurements were performed to investigate the phase transition behavior and mesophase structures of the trimers. Both CBSenOBOnSeCB trimers exhibited nematic (N) and N_TB phases. The XRD measurements revealed the presence of smectic A-like cybotactic clusters with a triply intercalated structure in the N and N_TB phases. The LC phase transition temperatures of CBSenOBOnSeCB were lower than those of the already-known ether-linked CBOnOBOnOCB and thioether-linked CBSnOBOnSCB counterparts. This trend is ascribed to the enhanced molecular bending and molecular flexibility of CBSenOBOnSeCB, which are caused by the smaller bond angle and greater bond flexibility of C–Se–C compared to C–O–C and C–S–C. This study offers a new molecular design for multiply linked LC oligomers with heavier chalcogen atoms. Full article

Classical chemical bonding is typically categorized into primary, strong interactions, such as covalent, ionic, and metallic bonds, and secondary, weak interactions, such as van der Waals forces, the hydrogen bond, and their likes (halogen bond, chalcogen bond, etc.). However, other not-so-known bonding mechanisms also play a crucial role in chemical systems. Particularly important are the charge-shift bond (CSB) and the multicenter bonds, i.e., the electron-rich multicenter bond (ERMB), also known as hypervalent or three-center-four-electron (3c-4e) bond, and the electron-deficient multicenter bond (EDMB), also known as the three-center-two-electron (3c-2e) bond in molecules and, more recently, as the two-center-one-electron (2c-1e) bond in extended solids. We consider that these latter interactions have not yet received the proper attention of the scientific community, even though multicenter interactions were proposed in the early days of Quantum Mechanics. In this work, we aim at providing: (i) a concise historical overview of the two types of multicenter bonds; (ii) a short introduction to the recently proposed unified theory of multicenter bonding (UTMB), which elucidates the origin and mechanisms of formation of both ERMBs and EDMBs; and (iii) an extension of the UTMB to include CSBs, due to the strong relationship between ERMBs and CSBs. We hope that the integrated perspective of chemical bonding, the heartland of chemistry, offered by the UTMB (beyond traditional and historical assumptions) will help researchers to understand materials properties and will provide a framework allowing the development of advanced materials for enhanced technological applications. Full article

Polysiloxanes are unique polymers used in medicine and materials science and are ideal for various modifications. Classic functionalization methods involve a covalent approach, but finer tuning of the properties of the final polymers can also be achieved through sub-sequent noncovalent modifications. This study introduces a fundamentally new approach to polysiloxane functionalization by incorporating cooperative noncovalent interaction centers: selenium-based chalcogen bonding donors and polyfluoroaromatic π-hole acceptors into a single polymer platform. We developed an efficient nucleophilic substitution strategy using poly((3-chloropropyl)methylsiloxane) as a platform for introducing Se-containing groups with polyfluoroaromatic substituents. Three synthetic approaches were evaluated; only direct modification of Cl-PMS-2 proved successful, avoiding catalyst poisoning and crosslinking issues. The optimized methodology utilizes mild conditions and achieved high substitution degrees (74–98%) with isolated yields of 60–79%. Comprehensive characterization using ¹H, ¹³C, ¹⁹F, ⁷⁷Se, and ²⁹Si NMR, TGA, and contact angle measurements revealed significantly enhanced properties. Modified polysiloxanes demonstrated improved thermal stability (up to 37 °C higher decomposition temperatures, 50–60 °C shifts in DTG maxima) and increased hydrophobicity (water contact angles from 69° to 102°). These systems potentially enable chalcogen bonding and arene–perfluoroarene interactions, providing foundations for materials with applications in biomedicine, electronics, and protective coatings. This dual-functionality approach opens pathways toward adaptive materials whose properties can be tuned through supramolecular modification while maintaining the inherent advantages of polysiloxane platforms—flexibility, biocompatibility, and chemical inertness. Full article

As work continues unabated in the study of noncovalent bonding, particularly σ-hole bonds, new challenges have emerged as the participation of transition metals in interactions of this sort is fast becoming appreciated. While there are certain similarities with the halogen, chalcogen, etc, bonds, in which the main group elements participate, there are certain unique properties of these metal atoms that must be analyzed before a complete understanding can be attained. As one example, these atoms tend to act simultaneously as both electron donors and acceptors, a synergistic action that amplifies the overall bond strength. Ideas are expressed in this paper to hopefully guide future work in this exciting new arena. Full article

Heavier element analogues of a ketone, a C=O double-bond compound, have been fascinating compounds from the viewpoint of main-group element chemistry because of their unique structural features and reactivity as compared with those of a ketone, which plays an important role in organic chemistry. We will report here the synthesis of diorgano-stannanethione and stannaneselone featuring tin–chalcogen double bonds, which are the heavy-element analogues of a ketone. The newly obtained stannaneselone has been structurally characterized by spectroscopic analyses and single-crystal X-ray diffraction (SC-XRD) analysis, showing the short Sn–Se bond length featuring π-bond character. The obtained bis(ferrocenyl)stannanechalcogenones were found to undergo [2+4]cycloaddition reactions with 2,3-dimethyl-1,3-butadiene, affording the corresponding six-membered ring compound. Notably, thermolysis of the [2+4]cycloadduct of the stannaneselone regenerated the stannaneselone via the retro[2+4]cycloaddition, whereas the sulfur analogue was thermally very stable. Full article

Chalcogenide samples from the As₂Se₃-GeTe-CdTe system were synthesized by the melt-quench technique. The surface topography of some of the samples was performed with the help of scanning electron microscopy. Various physical parameters of the chalcogenide glasses were calculated: the degree of cross-linking atom, the average heteropolar bond energy of the glasses, the content of chalcogen in the glass, the mean coordination number, and the average energy of the chemical bonds between the atoms of the metals in the glass. With their help, the components of the overall bond energy were calculated: the mean bond energy of the average cross-linking per atom and the average bond energy per atom of the “remaining matrix”. A linear dependence has been established between the glass transition temperature and the overall mean bond energy and between the glass transition temperature and the mean coordination number. The correlation between microhardness and glass transition temperature of chalcogenide glasses was investigated. The dependance between the composition and physical parameters of the As₂Se₃-GeTe-CdTe glasses was established and discussed. Full article

Chalcogen-bonded [Se–N]₂ is a strong cyclic supramolecular synthon in supramolecular chemistry. Selenadiazole is commonly used in the synthesis of [Se–N]₂. One nitrogen atom in a selenadiazole molecule participates in the formation of [Se–N]₂, while the other nitrogen atom can participate in the formation of other types of noncovalent bonds. Investigating the effect of neighboring noncovalent bonds on [Se–N]₂ is beneficial for its further synthesis and application. In this study, we combined theoretical calculations and crystallography to explore the effect of I···N halogen bonds on [Se–N]₂ in both the gas phase and the crystalline phase. Gas-phase calculations show that the formation of halogen bonds increases the strength of [Se–N]₂, and the strength of the halogen bond is directly proportional to the strength of [Se–N]₂. In the crystalline phase, [Se–N]₂ is influenced by more noncovalent bonds in addition to halogen bonds, making the results more complex. However, if the effect of other noncovalent bonds is relatively small, the strength of the halogen bond remains directly proportional to the strength of [Se–N]₂. It is believed that the conclusions drawn from halogen bonds are also applicable to other types of noncovalent bonds. Full article

The Group 16 elements of the periodic table have a characteristic valence shell configuration instrumental to their chemical properties and reactivities. The electrostatic potentials of these so-called chalcogens have been exploited in the design of materials that require the efficient passage of electrons including supermagnets, photocatalytic dyes, and solar panels. Likewise, the incorporation of the heavy chalcogen selenium into organic frameworks has been shown to increase the reactivities of double bonds and heterocyclic rings, while its interactions with aromatic side chains in the hydrophobic core of proteins via selenomethionine impart a stabilizing effect. Typically present in the active site, the hypervalence of selenocysteine enables it to further stabilize the folded protein and mediate electron transfer. Selenium’s native occurrence in bacterial tRNA maintains base pair fidelity, most notably during oxidative stress, through its electronic and steric effects. Such native modifications at the positions 2 and 5 of uridine render these sites relevant in the design of RNA-based therapeutics. Innocuous selenium substitution for oxygen in the former and the standard methods of selenium-derivatized oligonucleotide synthesis and detection have led to the establishment of a novel class of therapeutics. In this review, we summarize some progress in this area. Full article

In this study, we report the first example of acyclic (amino)(N-pyridinium)carbenoid gold(III) complexes synthesized via a coupling reaction between 2-pyridylselenyl chloride and Au(I)-bound isonitriles. The reaction involves an initial oxidative addition of the Se–Cl moiety to Au(I), followed by the nucleophilic addition of the pyridine fragment to the isonitrile’s C≡N bond, furnishing a metallacycle. Importantly, this is the first example of the pyridine acting as a nucleophile towards metal-bound isonitriles. Arguably, such an addition is due to the chelate effect. The structures of the gold(III) carbenoid complexes were unambiguously established using X-ray diffraction and NMR spectroscopy. Theoretical calculations, including DFT, Natural Resonance Theory (NRT), and Meyer bond order (MBO) analyses, were used to analyze the different resonance forms. The reaction mechanism was further elucidated using DFT calculations, which identified the oxidative addition as the rate-determining step with a barrier of 29.7 kcal/mol. The nucleophilic addition proceeds with a minimal barrier, making the reaction highly favorable. The antiproliferative activity of new compounds 2a–2e was tested against two human cancer cell lines: A2780 ovarian adenocarcinoma and the A278Cis cisplatin-resistant variant. Full article

Chalcogen bonds (ChBs) involving selenium have attracted substantial scholarly interest in past years owing to their fundamental roles in various chemical and biological fields. However, the effect of the valency state of the electron-deficient selenium atom on the characteristics of such ChBs remains unexplored. Herein, we comparatively studied the σ-hole-type Se∙∙∙O ChBs between SeF₂/SeF₄ and a series of oxygen-bearing Lewis bases, including water, methanol, dimethyl ether, ethylene oxide, formaldehyde, acetaldehyde, acetone, and formic acid, using ab initio computations. The interaction energies of these chalcogen-bonded heterodimers vary from −5.25 to −11.16 kcal/mol. SeF₂ participates in a shorter and stronger ChB than SeF₄ for all the examined heterodimers. Such Se∙∙∙O ChBs are closed-shell interactions, exhibiting some covalent character for all the examined heterodimers, except for SeF₄∙∙∙water. Most of these chalcogen-bonded heterodimers are predominantly stabilized through orbital interactions between the lone pair of the O atom in Lewis bases and the σ*(Se–F) antibonding orbitals of Lewis acids. The back-transfer of charge from the lone pair of selenium into the σ* or π* antibonding orbitals of Lewis bases is also observed for all systems. Energy decomposition analysis reveals that the electrostatic component significantly stabilizes the targeted heterodimers, while the induction and dispersion contributions cannot be ignored. Full article

Herein, we describe a novel coupling between ambiphilic 2-pyridylselenyl reagents and nitriles featuring an active α-methylene group. Depending on the solvent employed, this reaction can yield two distinct types of cationic pyridinium-fused selenium-containing heterocycles, 1,3-selenazolium or 1,2,4-selenadiazolium salts, in high yields. This is in contrast to what we observed before for other nitriles. Notably, the formation of selenadiazolium is reversible, gradually converting into the more thermodynamically stable selenazolium product in solution. Our findings reveal, for the first time, the reversible nature of 1,3-dipolar cyclization between the CN triple bond and 2-pyridylselenyl reagents. Nitrile substitution experiments in the adducts confirmed the dynamic nature of this cyclization, indicating potential applications in dynamic covalent chemistry. DFT calculations revealed the mechanistic pathways for new cyclizations, suggesting a concerted [3 + 2] cycloaddition for the formation of selenadiazolium rings and a stepwise mechanism involving a ketenimine intermediate for the formation of selenazolium rings. Natural bond orbital analysis confirmed the involvement of σ-hole interactions and lone pair to σ* electron donation in these processes. Additionally, theoretical investigations of σ-hole interactions were performed, focusing on the selenium-centered contacts within the new compounds. Full article