Search Results (8,126)

Antibiotic-resistant bacteria are widely distributed and threaten public health. Photocatalytic antimicrobial technology can effectively inactivate multidrug-resistant bacteria without readily inducing resistance. We previously showed that oxygen-rich vacancy Bi₂MoO₆ (OBM) exhibits excellent activity against methicillin-resistant Staphylococcus aureus (MRSA), but the underlying molecular mechanisms remain poorly understood. Here, we employed integrated transcriptomics and metabolomics, with qRT-PCR validation, to systematically elucidate the antibacterial mechanism of OBM against MRSA. OBM treatment induced profound transcriptional and metabolic alterations: 231 differentially expressed genes and 206 differentially abundant metabolites were identified. Functional enrichment analysis revealed cooperative involvement in multiple critical pathways, including inhibition of amino acid biosynthesis and protein translation, disruption of cell wall and membrane integrity, induction of oxidative stress, collapse of energy metabolism (suppression of oxidative phosphorylation and impaired ATP synthesis), and imbalance in nucleotide metabolism (down-regulation of DNA helicase and mismatch repair genes, dysregulation of purine/pyrimidine metabolism). These findings demonstrate that OBM photocatalytically inactivates MRSA through a multi-target systemic attack at both the transcriptional and metabolic levels, providing a novel theoretical foundation for the development of photocatalytic materials aimed at controlling MRSA and other drug-resistant bacteria. Full article

Inulin-type fructans are widely recognized as functional polysaccharides with prebiotic properties, while plant polyphenols represent one of the most important classes of natural antioxidants. Increasing evidence demonstrates that interactions between dietary fibers such as inulin and phenolic compounds significantly influence antioxidant capacity, bioavailability, and physiological activity. The present review integrates recent advances regarding the chemical structure of inulin, extraction sources, molecular interactions with polyphenols, and implications for antioxidant activity in functional foods and nutraceuticals. Experimental studies indicate correlations between inulin concentration and antioxidant parameters such as DPPH, FRAP, SOD and CAT activities. Furthermore, physicochemical interactions between cell wall polysaccharides and polyphenols influence the stability, release kinetics and bioefficacy of antioxidant compounds. These findings support the potential development of optimized functional formulations combining inulin-rich plant extracts with polyphenol sources for improved health benefits. The literature was identified through searches of PubMed, Scopus and Web of Science databases (2000–2026). Full article

Soybean is an important crop for food, oil and feed production in China, and improving its yield is a major national goal. Salt stress severely restricts soybean production. XTH genes participate in plant growth and stress adaptation, yet the functions of most soybean XTH members are unclear. In this study, we cloned the soybean GmXTH-like26 gene previously identified via transcriptome sequencing, and successfully constructed its overexpression vector and CRISPR/Cas9 gene-editing vector. Subcellular localization analysis confirmed that GmXTH-like26 is localized to the cell wall. The gene was transformed into soybean via the Agrobacterium-mediated method. Under 100 mM NaCl stress, the GmXTH-like26-overexpressing lines exhibited markedly enhanced salt tolerance at both germination and seedling stages compared with the control group. Physiological and biochemical assays showed that the overexpression plants had higher activities of superoxide dismutase (SOD), peroxidase (POD) and catalase (CAT), lower malondialdehyde (MDA) content and higher chlorophyll content under salt stress, while the gene-edited lines displayed the opposite trends. These results indicate that GmXTH-like26 improves salt tolerance in soybean by reducing reactive oxygen species accumulation and effectively enhances the resistance of soybean to salt stress. Full article

Changes in wood moisture content significantly affect its dimensions, mechanical properties, and vibrational characteristics. Thermal treatment is one of the most convenient approaches for improving the moisture resistance of wood; however, the effects of treatment conditions on moisture content and vibrational characteristics after short-term cyclic moisture absorption have not been clearly investigated. In this study, dry thermal treatment at 160–220 °C for three different durations was applied to Japanese cedar specimens. Higher thermal treatment temperatures and longer treatment times decreased the equilibrium moisture content (EMC). The fundamental resonant frequency of the free–free flexural vibration (f₁) increased with increasing treatment temperature, whereas it decreased over a longer duration. All specimens were subjected to three cycles of moisture change tests from 60%RH to 98%RH at 40 °C to track the change in moisture content, f₁ and its loss tangent (tanδ). The specimens treated at higher temperatures maintained a lower moisture content and higher f₁. Under most treatment conditions, the moisture content at 98%RH increased from the first to the second cycle and remained constant in the third cycle. On the other hand, the resonant frequency at 98%RH remained unchanged from the first to the second cycle but increased in the third cycle. This indicates that the moisture surface became saturated in the second cycle, and moisture diffusion from the surface to the inside of the specimen increased with the number of cycles. Near-infrared absorption revealed that high-temperature treatment caused thermal decomposition of hemicellulose and an increase in apparent crystallinity due to a reduction in the amorphous region of cellulose. These changes enhance the hydrophobicity of the cell wall, contributing to moisture resistance and vibrational stability. Full article

Systemic hypoxia influences the state of the intestinal epithelial barrier and the microbiome; however, the role of the initial tolerance of the organism to oxygen deficiency in the development of these changes remains poorly studied. The aim of the study was to evaluate the colon histophysiological features and the gut microbiome in rats that were tolerant and susceptible to hypoxia under intermittent hypoxic exposure of varying severity. In male Wistar rats, tolerance to oxygen deficiency was determined according to the Hif1a, Epas1, and Hif3a expression levels in peripheral blood leukocytes, after which they were subjected to intermittent hypoxic exposure at an “altitude” of 5000 m or 7000 m for 1 h daily for 21 days. Subsequently, the state of the intestinal epithelial barrier was assessed using histological, histochemical, and immunohistochemical methods, and the microbiota composition was analyzed by PCR. Under normoxic conditions, in comparison with rats that are tolerant to hypoxia, susceptible animals demonstrated a greater volume fraction of goblet cells and a low abundance of Parabacteroides spp. Intermittent hypoxic exposure induced multidirectional changes depending on the initial tolerance and the severity of the regimen. In tolerant-to-hypoxia animals, an increase in the goblet cells volume fraction was detected after the exposure at the 5000 m “altitude”, while at an “altitude” of 7000 m, a decrease in the number of cells in the lamina propria of the mucosa and Clostridium perfringens gr. abundance, as well as a reduction in the Firmicutes/Bacteroidetes ratio, was observed. In susceptible-to-hypoxia animals, a higher abundance of Clostridium perfringens gr. in comparison with tolerant rats was revealed after the exposure at an “altitude” of 7000 m, with no structural changes in the intestinal wall. Thus, intermittent hypoxic exposure led to a rearrangement of the gut microbiome and the morphofunctional characteristics of the intestinal barrier, and the severity of these changes depended on the initial tolerance of the organism to oxygen deficiency and the severity of the hypoxic regime, which should be taken into account when conducting biomedical research. Full article

Certain sacoglossan sea slugs, often known as “solar-powered sea slugs”, are a group of marine gastropods that have the unique ability to photosynthesize by stealing functional chloroplasts from algae. The sacoglossan Elysia papillosa can maintain functional chloroplasts for up to two weeks after feeding. The microbiome of these slugs may play a crucial role in their metabolism, immunity, development, but more importantly their photosynthesis. Shotgun metagenomic sequencing was conducted on four samples of E. papillosa in order to characterize their microbiome. Sequences were classified and relative abundance was quantified with Centrifuger and functional data was examined using SqueezeMeta. Bacteria were analyzed by taxonomic groups and hypothesized function to the sea slug was determined with literature analysis. All samples were dominated by phyla Actinomycetota, Bacillota, Patescibacteriota, and Pseudomonadota. The presence of the phyla Bacteroidota and Bacillota was notable in all samples, which contain species known to produce enzymes that break down polysaccharides. It is possible that these bacteria could assist in degradation of the polysaccharide xylan found in the cell walls of Penicillus, the algal food source of E. papillosa. One species that was found in all samples was Cutibacterium acnes which has been shown to be an important component of the gut microbiota in other marine invertebrates and may provide the host with vitamin B12 and other beneficial nutrients. Many of these bacteria may be opportunistic rather than commensal. As a result, more research is required to describe the interactions between the slug and its microbiome, but this preliminary report provides a valuable starting point for identifying the microbiome make-up to further understanding of these relationships. Full article

Fungal infections pose diagnostic challenges in both human and veterinary medicine, as traditional detection methods such as fungal culture are time-consuming, microscopy is operator-dependent, and molecular detection assays often require specialized instrumentation and trained personnel, which can limit their routine clinical application. This study developed a sandwich immunoassay to detect β-1,3- and β-1,6-glucans, two major components of the fungal cell wall, based on two catalytically inactive glucanase mutants, LamA_E175Q and Neg1_E321Q. The sandwich ELISA exhibited higher detection sensitivity than conventional ITS-based PCR for Saccharomyces cerevisiae and Candida albicans under the conditions of this study. Using pre-coated plates, the sample-processing and detection workflow can be completed in approximately 40 min. It effectively detected a wide range of fungal species, including yeasts (Saccharomyces cerevisiae, Candida albicans) and filamentous fungi such as dermatophytes and non-dermatophyte molds. In a preliminary clinical cohort, the assay identified β-glucan signals in all 21 samples confirmed positive for dermatophytes, while no signal was detected in 20 negative samples, suggesting potential clinical applicability. This dual-enzyme sandwich immunoassay provides a rapid and low-cost complementary tool for broad-spectrum fungal screening, which may help guide further confirmatory diagnostics and timely clinical decision-making. Full article

Soil salinity is a major constraint on global wheat productivity, yet the genetic and molecular determinants of root system architecture (RSA) adaptation under salt stress remain poorly characterized. We integrated a genome-wide association study (GWAS) of 566 wheat accessions with comparative RNA-seq transcriptomics to identify the genetic and transcriptional determinants of RSA adaptation under 200 mM NaCl. GWAS identified a candidate locus on chromosome 7B harboring TaIAO, which encodes a protein with predicted aldehyde oxidase-like activity consistent with a role in tryptophan-dependent auxin biosynthesis. Accessions carrying the favorable CC allele exhibited significantly greater root volume retention than those carrying the GG genotype (p < 0.001). Comparative RNA-seq revealed that the salt-tolerant Sarajevo 1 exhibited coordinated transcriptional repression of three distinct modules—cell wall expansion (TaExpansin), auxin redistribution (TaPIN-like), and stress-associated ROS defense (TaPOD1)—whereas the sensitive genotype CI 17260 aberrantly induced or incompletely repressed these modules under stress. ELISA-based IAA quantification, ROS imaging, and qRT-PCR analysis provided independent physiological and transcriptional support for these patterns. These findings support a two-tier adaptive model in which constitutive genetic variation at the TaIAO locus may contribute to a developmental baseline, coupled with coordinated stress-responsive transcriptional repression of energy-consuming modules, providing promising targets for marker-assisted breeding of salt-tolerant wheat. Full article

Waterlogged archaeological wood represents a unique cultural heritage but is highly susceptible to physical and chemical degradation, which complicates conservation and restoration. This study aimed to prepare artificial archaeological Cunninghamia lanceolata wood using NaOH vacuum impregnation and systematically evaluate the effects of NaOH concentration and treatment cycles as two treatment variables on wood degradation. Untreated heartwood specimens were treated with 5%, 10%, 20%, and 30% NaOH solutions for 2, 4, and 6 cycles. The NaOH treatment first induced chemical and structural deterioration, including selective degradation of hemicelluloses, changes in cellulose crystallinity, and progressive damage to the wood cell-wall structure. XRD analysis revealed a significant reduction in cellulose crystallinity from 35.96% to 10.11%, while FTIR confirmed the degradation of hemicelluloses and the relative enrichment of lignin-related structures. SEM observations further showed severe cell-wall erosion, lumen deformation, and local collapse, indicating that alkali treatment effectively reproduced typical microstructural features of degraded waterlogged wood. These chemical and microstructural changes subsequently led to marked changes in physical and mechanical properties. Mass loss increased with NaOH concentration and cycle number, while basic density decreased and maximum water content increased, indicating enhanced deterioration and water-holding capacity. Treated specimens also exhibited increased swelling and shrinkage rates and a substantial reduction in longitudinal compressive strength, with the most pronounced deterioration occurring under higher NaOH concentrations and repeated cycles. The study demonstrates that NaOH treatment can reproducibly simulate the physical, chemical, and microstructural characteristics of waterlogged archaeological wood, providing a reliable experimental model for studying wood degradation mechanisms and supporting conservation strategies. Full article

Background: The NAC family constitutes one of the largest families of plant-specific transcription factors and plays crucial roles in fruit development, ripening, seed life, and stress responses. However, comprehensive characterization of NAC genes in Persea americana (avocado), an economically important horticultural crop, has been largely unexplored. Methods: We performed a genome-wide identification and systematic characterization of NAC transcription factor (TF) genes in P. americana using blastp analysis, phylogenetic reconstruction, expression profiling and weighted gene co-expression network analysis (WGCNA). Results: A total of 130 NAC genes (PaNACs) were identified and distributed across all 12 chromosomes. Phylogenetic analysis classified these PaNACs into eight distinct subfamilies. WGCNA identified 43 co-expression modules, with 68 PaNAC genes distributed across 24 modules associated with hormone signaling, cell wall modification, secondary metabolism, and fatty acid beta-oxidation. Among 48,785 developmental differentially expressed genes (DEGs), 70 PaNAC genes were differentially expressed, with PaNAC003 and PaNAC002 showing the strongest upregulation and PaNAC023 and PaNAC025 the strongest downregulation. Among 9488 ethylene-responsive DEGs, PaNAC041 was suppressed by ethylene and induced by 1-methylcyclopropene (1-MCP, a competitive inhibitor of ethylene perception), while PaNAC016, PaNAC085, and PaNAC086 showed the opposite pattern. Conclusions: These findings provide a genomic and transcriptional framework for future functional investigation of PaNAC genes and their potential relevance to avocado fruit development and postharvest ripening. Full article

A newly isolated red-pigmented yeast, Sporobolomyces reniformis EMCC1691, was evaluated for its biotechnological potential in an integrated case study aimed at developing an efficient microbial cell factory for the valorization of delactosed whey. Fermentation trials in 5 L bioreactors demonstrated robust yeast growth on this dairy by-product, with complete consumption of glucose (21.86 g/L) and galactose (20.36 g/L), leading to the accumulation of approximately 6172 mg/L of lipids and 5634 µg/L of total carotenoids. Fatty acid analysis revealed a final concentration of 3924 mg/L, mainly represented by oleic (2037 mg/L), palmitic (779 mg/L), stearic (403 mg/L), and linoleic (362 mg/L) acids. HPLC analysis showed a pigment profile dominated by torularhodin, torulene, γ-carotene, and β-carotene. To complement downstream processing, the fermented culture was spray-dried into a stable powder and subsequently subjected to a simple, cost-effective, and unconventional mechanical pretreatment using a hydraulic press. This post-drying operation ensured extensive cell-wall disruption without the use of chemical agents or specialized equipment, thereby significantly enhancing the recoverability of intracellular lipids and carotenoids through supercritical CO₂ extraction. Under optimized conditions, SFE-CO₂ with ethanol recovered 92.18 ± 1.61 µg/g of total carotenoids, achieving an extraction efficiency of 84% relative to organic solvent extraction (109.17 ± 2.10 µg/g). Importantly, fermentation also reshaped the fatty acid composition of delactosed whey, shifting it toward a profile enriched in monounsaturated and polyunsaturated fatty acids, thereby further highlighting the metabolic impact and bioconversion potential of S. reniformis EMCC1691. Overall, this work highlights the technological relevance of a recently characterized yeast species and its potential to convert dairy by-products into high-value compounds within a proof-of-concept microbial cell factory framework, paving the way for future scale-up investigations. Full article

Atherosclerosis begins with endothelial dysfunction, inflammatory activation, and immune-cell recruitment within a spatially organized vascular wall. Conventional static cultures and Transwell systems are advantageous for isolated readouts, but they fail to effectively recapitulate multicellular compartmentalization, extracellular matrix support, and dynamic perfusion within a singular platform. Here, we present a four-channel microfluidic vascular-wall chip designed to reconstitute an endothelial cell-extracellular matrix-smooth muscle cell arrangement and to model early atherosclerosis-related inflammatory endothelial dysfunction. The device comprises a perfusable endothelial channel, a collagen I hydrogel region embedded with human aortic smooth muscle cells, a cell-free matrix region, and a culture-medium supply channel. Under physiological conditions, HUVECs formed a ZO-1-positive endothelial barrier and maintained high cellular viability. Stimulation with TNF-α and IL-1β (10 ng/mL each) elevated IL-6 secretion, promoted the recruitment of THP-1-derived M0-like macrophages, disrupted ZO-1 continuity, and increased FITC-dextran permeability without causing extensive cell death. The chip was subsequently utilized to evaluate metformin and atorvastatin therapies. The combinational treatment produced a more pronounced attenuation of MCP-1 secretion than either monotherapy under the inflammatory background. While this platform does not recapitulate advanced plaque formation, lipid deposition, foam-cell formation, or disturbed arterial shear, it successfully provides a microfluidic model of early inflammatory endothelial dysfunction to facilitate mechanistic studies and preliminary anti-inflammatory drug evaluation. Full article

Future lunar missions, like the International Lunar Research Station (ILRS), demand single-launch multi-point operations, urgently requiring reusable energy-absorbing structures. Integrating shape memory alloy (SMA) into honeycombs offers a promising solution; however, deformation exceeding the SMA’s recoverable limit induces structural residual deformation, altering the configuration and degrading subsequent energy absorption. To address this, we propose a semi-analytical, data-calibrated hybrid model predicting SMA honeycomb residual deformation. A four-stage linear constitutive model is established capturing superelasticity and martensitic yielding. Cell walls are idealized as equivalent beams. Using layered fiber integration and numerical interpolation, a nonlinear moment–curvature relationship is constructed, enabling rapid structural residual deflection evaluation from material residual strains. Finite element results confirm that initial residual deformation stabilizes the honeycomb into a reusable configuration, governing subsequent plateau stresses. Calibrated by uniaxial test data, the proposed model accurately predicts residual deformation ratios and reusable plateau stresses with errors within 8%. By bridging material-level strain with structural-level deformation, this approach circumvents computationally expensive full-scale simulations and costly experimental trials, providing a highly efficient tool for designing reusable SMA absorbers. Full article

Bryophytes are key components of acid–soil ecosystems; however, their capacity for aluminum (Al) accumulation and tolerance remains poorly understood. In this study, bryophytes and a limited number of pteridophyte and lichen species were collected from acidic soils of tea plantations and adjacent forest stands in the Caspian region of northern Iran and analyzed. Nearly all bryophyte specimens exhibited Al concentrations above the critical accumulation threshold (1000 µg g⁻¹ DW), with some reaching values exceeding 28,000 µg g⁻¹ DW, confirming their strong accumulation capacity. After Al, iron was the most abundantly accumulated metal (1430–22,800 µg g⁻¹ DW), followed by manganese (100–3100 µg g⁻¹ DW). The sampled lichen species accumulated Al at concentrations between 1063 and 9154 µg g⁻¹ DW, while Al levels in the aerial parts of pteridophytes rarely exceeded the critical threshold; when they did, accumulation occurred predominantly in old and fertile fronds rather than sterile ones. Three field-collected bryophyte species—Barbula unguiculata, Palamocladium euchloron, and Hypnum cupressiforme—were acclimated to laboratory conditions and treated with two Al levels (without or with 150 µM Al, pH 4.0) for 12 weeks. The leafy shoots were analyzed for their antioxidant response, osmolyte accumulation, phenolic metabolism, callose deposition, and carboxylic-acid profile. Histochemical analyses revealed predominant localization of Al in cell walls, associated with enrichment of pectin and uronic acids. These responses were most pronounced in H. cupressiforme, followed by P. euchloron, and least evident in B. unguiculata. Elevated levels of intracellular detoxification compounds—phenolics, flavonoids, and carboxylic acids (tartaric, oxalic, malic, and citric acids)—were detected, again with species-specific differences. Overall, the results reveal that bryophytes employ multiple physiological strategies to tolerate Al toxicity, with substantial interspecific variation. These findings emphasize their ecological significance and provide a foundation for future research on the physiological and evolutionary mechanisms underlying Al tolerance and accumulation in early land plants. Full article

With the expansion of modern protected agriculture, the amount of post-harvest tomato biomass has increased sharply. Conventional unmanaged disposal practices disrupt carbon flows and cause substantial environmental emissions. Tomato plant residues (TPRs), which are rich in lignocellulose and selected high-value secondary metabolites, have considerable potential as feedstocks for green industrial materials. However, their complex biophysical properties, high physiological moisture content, and recalcitrant cell-wall barriers hinder large-scale processing. This review systematically examines the mechanisms and process architectures for converting TPRs into macromolecular products. First, it analyzes cross-scale anatomical heterogeneity and dynamic rheological properties of TPRs, defining their physicochemical boundaries as industrial precursors. Second, it summarizes the development of physical field-coupled equipment, ranging from anti-tangling harvest-shredding to die-roller densification. Furthermore, it examines the core mechanisms of multi-field-coupled pretreatment technologies, including steam explosion, deep eutectic solvents (DES), and mechanochemistry, in deconstructing vascular skeletons and reducing multiphase mass-transfer resistance. Finally, this review discusses reconstruction pathways for TPR-derived components in advanced polymer materials, including biodegradable nanocellulose films, bio-based composites, aerogels, and lignin-based polyurethane networks. Overall, it links microscopic reaction kinetics with macroscopic equipment engineering, proposes a closed-loop material conversion system from in-field volume reduction to cascaded biorefinery, and provides an engineering framework for future multi-machine intelligent collaboration and continuous production across the industrial chain. Full article