Search Results (44)

Brucella intermedia, a gram-negative, non-lactose-fermenting, aerobic, rod-shaped bacterium, is found in environmental sources (e.g., soil and water). In 2020, Ochrobactrum was reclassified as Brucella. We conducted a genomic analysis of B. intermedia from hospital wastewater samples in western Ghana. A hybrid genome assembly was constructed integrating short-read data from DNA Nanoball sequencing with long-read sequences generated by Oxford Nanopore MinION technology. Identification and antimicrobial susceptibility profiles were determined using MicroScan autoSCAN-4 based on Clinical and Laboratory Standard Institute documents. ResFinder and CARD Resistance Gene Identifier (RGI) were used to identify antimicrobial resistance (AMR) genes, and BLAST and VFDB datasets were used to identify virulence factor genes. The complete genome had two chromosomes, no plasmid, and a high average nucleotide identity value (98.05%) with B. intermedia. Resistance to trimethoprim-sulfamethoxazole was revealed, the first report in this species. CARD RGI revealed the presence of AMR genes, including ANT(9)-Ic and adeF. Local BLAST analysis revealed Cgs, a B. melitensis virulence factor. B. intermedia is an opportunistic human pathogen clinically isolated several times, suggesting the importance of accurately identifying multidrug resistance. B. intermedia may possess virulence factors similar to those of B. melitensis. Further study is needed to fully elucidate its pathogenesis. Full article

Currently, there are many infrastructures for which these design service lives are expired. These lifespans have been extended through retrofitting and strengthening. Usually, the existing reinforced concrete (RC) structures are strengthened by applying steel plate bonding and concrete enlargement methods. However, since fiber-reinforced polymer (FRP) composite materials have properties that are better than those of steel and concrete materials, i.e., being light weight, with anticorrosive material, a high ratio of strength to weight, and better workability, FRP sheet bonding methods for RC members have been developed, and practical applications have been gradually increased worldwide, statically. The methods may also have some potential to strengthen the members under impact and blast loading. In this paper, to rationally improve the impact resistance of RC beams under flexure, beams were strengthened by bonding an FRP sheet to the bottom tension side. Then, low-velocity impact loading tests (hereafter referred to as impact loading tests) using a 300 kg steel weight were carried out on the beams strengthened with carbon FRP (CFRP) sheets of different areal masses to investigate the failure mode at the ultimate state of the beams, in which the areal mass is physically similar to the amount of the sheet reinforcing RC beams and hereafter referred to as the sheet volume. Two sheet volumes (one is an areal mass of 300 g/m² having a 0.17 mm thickness and the other is of 600 g/m² having a 0.33 mm thickness) were compared, and two static failure modes, concrete crushing-intermediate crack (IC) debonding and premature IC debonding, were observed. The following results were obtained from this study: taking a static calculated moment ratio M_y/M_u of the rebar yield-moment M_y to the ultimate moment M_u for each beam, in the case of the beams having an M_y/M_u (=0.67) larger than 0.65 that went through static failure in the concrete crushing-IC debonding mode, the beams failed in sheet rupturing mode subjected to an impact load. When the sheet volume was comparatively large and a static calculated moment ratio M_y/M_u (=0.6) was less than 0.65, the beams collapsed in the premature IC debonding mode under not only static but also impact loading, and the impact resistance of the beams was enhanced with an increasing sheet volume; this increase was greater in the impact loading case than in the static loading case. Full article

Identifying major blast resistance genes in Oryza sativa L. genotypes is key to enhancing and maintaining the resistance. Observing rice varieties with durable resistance to blast has become a potential target in rice breeding programs. In this study, an evaluation was conducted during 2020 and 2021 on ten Egyptian and introduced varieties. First, a field experiment was conducted in a randomized complete block design with three replications, and it was found that the Egyptian cultivar Sakha 101 had the highest crop grain yields (53.27 g). The Spanish varieties Hispagrán and Puebla were the earliest (110 and 108 days, respectively) as well as the highest in 1000-grain yield, giving them priority as donors for these traits; however, they had the lowest mean values in the number of panicles. Second, these cultivars were subjected to eighteen isolates from five strains of Pyricularia oryzae (IH, IC, ID, IE, and II). The Egyptian varieties Giza 177, Giza 179, Sakha 106, Giza 182, GZ1368-5-5-4, and GZ6296 were 100% resistant, while Hispagrán’s resistance was 16.6%, followed by Sakha 101 with 27.8%. To gain insight into the ten varieties, we used STS, SCAR, and CAPS markers to detect and mine alleles for major blast broad-spectrum resistance genes Pi2, Pi9, and Pita2. In the context of considering gene pyramiding as an effective strategy for achieving broad durable spectrum resistance to blast, molecular profiling was also conducted on eighteen F2 single plants obtained from the hybridization of Giza 177 (resistant) × Puebla (susceptible) varieties. Also, eighteen F2 single plants were obtained from Giza 177 × Hispagrán (highly susceptible) varieties. Conducting a molecular scan with STS dominant marker YL153/YL154 was performed on ten cultivars to detect the presence of the Pita2 gene, which conferred a unique band in Puebla. By doing a scan of the 18 second-generation plants derived from Giza 177 × Puebla, 11 individual plants of the 18 plants obtained a band, which was transferred from Puebla. F2 plants obtained from Giza 177 × Puebla amplified with CAPS marker RG64-431/RG64-432 had higher numbers of Pi2 alleles, while F2 plants of Giza 177 × Hispagrán cross-amplified with SCAR marker linked to Pi9 exceeded their parents more. Our results have revealed that molecular markers played an essential role in determining the direction of evolution for blast resistance traits. Full article

Given the limited comprehensive data on the bone marrow (BM) immune environment in acute myeloid leukemia (AML), we analyzed the distribution and phenotype of T cell subsets, including γδ T cells, and their immune checkpoint (IC) ligands on blasts. We performed multiparametric flow cytometry with BM samples taken from 89 AML patients at the time of diagnosis, remission, and relapse/refractory status after chemotherapy and 13 healthy controls (HCs) to identify immune-related risk factors. Compared to the HCs, the T cells of the AML patients exhibited exhausted features including higher TIGIT levels and similar levels of PD-1 and TIM-3. The γδ T cells were exhausted by the upregulation of TIGIT and/or TIM-3 and downregulation of NKG2D and NKp30, with different patterns in the Vδ1 and Vδ2 subtypes. A successful chemotherapeutic response partially restored the exhausted phenotypes of the T cell subsets. The simultaneous analysis of IC receptors on the T cell subsets and their ligands on blasts showed the prognostic value of a specific IC receptor–ligand pair and the feasibility of risk stratification based on their diverse patterns. Our findings clarified the BM T cell landscape in AML, unveiling the prognostic value of γδ T cells in both diagnosis and remission predictions. Full article

Dry ice blasting is a technology that has been widely studied and applied in different industrial sectors as an alternative to the use of solvent, water, or abrasive spraying methods. It is a CO₂ spraying system capable of balancing efficiency and sustainability with a wide variety of equipment available on the market. This study analyses and compares cryo-cleaning equipment manufactured by pioneering companies in the cryogenic industry. Based on data sheets, safety data sheets, and contact with manufacturers, a quantitative comparative study has been carried out. The aim of this study is to identify those with the best performance, efficiency, and adaptability to operational and environmental requirements. The results reflect the strengths and weaknesses of the equipment in terms of occupational safety and operability. These have been discussed and evaluated, recognising improvements of this technology, which is capable of removing surface layers of different natures without altering the underlying substrate. Full article

Unauthorised graffiti is a challenge in urban environments, affecting railway structures, stations, tracks, and vehicles. Inefficient cleaning methods increase the costs and downtime of railcars, limiting passenger transport. In turn, they are harmful to the operator’s health and the environment, due to the VOCs they release. This study focuses on the feasibility of dry-ice blasting, replacing carbon dioxide with ambient air as an innovative and sustainable solution to remove graffiti from rail vehicles. Experimental tests have been carried out with 13 different aerosols, controlling the temperature (<−80 °C), pressure (up to 3 bar), projection distance (0.5 cm) and exposure times (30″/1′/2′/4′/6′/8′/++). The results showed that ultra-freezing with ambient air preserved the integrity of the support materials and altered the topography, colourimetry and adhesion of the aerosols tested, achieving the total removal of one of the paints. Preliminary results suggest that ultra-freezing with ambient air could be a viable and sustainable solution for graffiti removal on railway structures, transferable to other urban environments. Full article

The aim of the present study was to determine the ACE inhibitory activity of aqueous extracts of olive pomace and to understand whether they represent a good source of bioactive LMW peptides for nutritional and pharmacological applications. We produced a water extract from olive pomace (var. Picual) and obtained its low molecular weight (LMW) fraction (<3 kDa). The calculated yield of extraction was 100.2 ± 7.9 mg of LMW peptides per 100 g of olive pomace. The olive pomace LMW fraction possessed strong ACE inhibitory activity (IC₅₀ = 3.57 ± 0.22 µg prot/mL). The LMW fraction (<3 kDa) was analysed by nanoscale liquid chromatography-Orbitrap coupled with tandem mass spectrometry and de novo sequencing. Thirty new peptides, containing between 7–17 amino acids and molecular masses ranging 778–1354 Da, were identified by the Peaks database algorithm using the available Olea europaea (cv. Farga) genome database. Ten new peptides were also identified by Peaks de novo sequencing. The protein sources of twelve peptides detected in the database by Peaks DB were identified by BLAST search. The ACE inhibitory activity of the identified peptides was predicted by BIOPEP software. We conclude that olive pomace possesses ACE inhibitory activity and contains low molecular weight peptides with (predicted) biological activity. Olive pomace may represent a good source of peptides for nutritional and pharmaceutical applications. In our study, it has been shown that olive pomace possesses ACE inhibitory activity and contains low molecular weight peptides with (predicted) biological activity. Olive pomace may represent a good source of peptides for nutritional and pharmaceutical applications. More research is needed in order to identify the in vivo effects of olive pomace bioactive peptides. Full article

Vibrio vulnificus is an opportunistic pathogen in humans and exhibits pathogenic behavior in several aquaculture fish species. To date, in Brazil, there are no reports of V. vulnificus outbreaks in farmed fish. However, in 2019, sorubim (Pseudoplatystoma sp.) in the grow-out phase with clinical signs and cumulative mortality of 40% was registered. We aimed to identify and characterize the etiological agents of this outbreak. Seven moribund fish were sampled for bacteriological studies, and isolates were obtained from the brain and kidneys. Bacterial identification using matrix-assisted laser desorption ionization mass spectrometry (MALDI-TOF/MS) revealed V. vulnificus. One isolate, RP4, was used for identification via dnaJ and 16S rRNA gene sequencing and antimicrobial susceptibility evaluation. Sorubim juveniles were experimentally challenged with RP4 isolate via intracelomic injection (IC, 10⁷ colony-forming units [CFU] fish⁻¹) and immersion bath (IB, 10⁶ CFU mL⁻¹ for 30 min). Identities to V. vulnificus of dnaJ and 16S rRNA genes by BLAST analysis were higher than 92% and 98%, respectively. Susceptibility to oxytetracycline, florfenicol, and other antimicrobial molecules was also observed. In the IC-challenged group, the mortality rate was 100% with V. vulnificus recovered from fish organs (brain, liver, spleen, and kidney). Additionally, splenic endothelium alterations were observed in the IC group. On the contrary, the control and IB groups did not develop any clinical signs, mortality, or bacterial recovery after 7 days of challenge. To the best of our knowledge, this is the first report of pathogenic V. vulnificus in farmed Pseudoplatystoma sp. Full article

The implications of different liquid nitrogen freezing (LNF) temperatures (−35 °C, −65 °C, −95 °C, and −125 °C) on the ice crystal and muscle quality of white shrimp (Litopenaeus vannamei) were investigated in this essay. The results showed that better muscle quality was maintained after LNF treatment compared to that after air blast freezing (AF) treatment. As the freezing temperature of liquid nitrogen decrease, the freezing speed accelerated, with the freezing speed of LNF at −125 °C being the fastest. However, an excessively fast freezing speed was not conducive to maintaining the quality of shrimp. Among all the freezing treatments, LNF at −95 °C led to the lowest thawing losses and cooking losses, and the highest L* values, indicating that LNF at −95 °C could keep the water holding capacity of frozen shrimp better than that with other freezing methods. At the same time, LNF at −95 °C resulted in higher water holding capacity, and hardness values for shrimps than those with other frozen treatments (p < 0.05). In addition, the results of the water distribution of shrimps showed that treatment with a −95 °C LNF reduced the migration rate of bound and free water. Meanwhile, the microstructural pores of shrimps in the −95 °C LNF group were smaller, indicating that the ice crystals generated during −95 °C LNF were relatively smaller than those generated via other frozen treatments. In conclusion, an appropriate LNF temperature (−95 °C) was beneficial for improving the quality of frozen shrimp, and avoiding freezing breakage. Full article

The edible parts of artichokes (Cynara scolymus L.) are usually preserved in brine due to the short harvest season; however, this is less preferred by both retail sales and the catering sector since the high amount of salt is harmful to health. Freezing is an alternative method in terms of providing longer shelf life. The final quality of frozen foods can vary with the rate of freezing and the structure, size and distribution of ice crystals formed during the freezing process. The formed ice crystals directly affect the cellular structure and thus resilience of the overall tissue. The aim of this study was to compare the effects of three different freezing methods, i.e., static, air-blast and individual quick freezing (IQF), on the quality characteristics of globe artichokes. In this context, globe artichokes were frozen until reaching a center temperature of −20 °C, then thawed at 4 °C to analyze the amount of ascorbic acid, total phenolic content, antioxidant capacity (with DPPH and ABTS method), color difference value, texture and microstructure. The findings showed that a moderate quick-freezing method or air-blast resulted in the most-conserved DPPH antioxidant capacity result. While the total phenolic content and hardness values were the lowest in static frozen samples, the ascorbic acid was found to be highest in this method. No significant difference was evidenced in the color difference values of the samples (ΔE = 7.9–8.4). When the microstructures were examined, larger ice crystals were formed in the static frozen artichoke samples, followed by the air-blast and IQF processes. It can be concluded that smaller and homogeneously dispersed ice crystals in the artichoke samples frozen by IQF could better preserve the cellular structure. Full article

This study determined how replacing sodium nitrate-based antifreeze admixture (AF) with belite-calcium sulfoaluminate (belite-CSA) cement affects the early age properties of ecological concretes based on ordinary Portland cement (OPC) and ground granulated blast-furnace slag (GGBFS). Concrete specimens were cured at −15 °C and treated in various ways before testing, i.e., no treatment, stored at 20 °C for 12 and 24 h. Generally, the addition of belite-CSA cement shortened the setting time due to the rapid formation of ettringite. The incorporation of 25 wt% of antifreeze admixture (AF) to the OPC-GGBFS concrete cured at −15 °C partially inhibited ice formation and enabled the continuation of hydration processes. This trend was observed for all samples, independent of the applied AF after freezing curing. On the contrary, the addition of 20 wt% of CSA failed to inhibit the ice formation and increased the risk of frost damage for concretes despite the treatment after freezing. These concrete specimens had lower hydration, lower strength, and a more porous binder matrix. The microstructure of the binder matrix was significantly affected by the amount of CSA and extreme negative curing, followed by no notable recovery post-curing at room temperature. Therefore, pre-curing at room temperature for at least 6 h has the potential to avoid frost damage. Concrete containing 25 wt% AF combined with 12 h and 24 h of curing at 20 °C after removal from freezing and prior to testing could enhance the compressive strengths of all concretes. The renewed hydration was indicated as the main influencing factor. Full article

To discover novel antimalarial and anticancer compounds, we carried out a genome analysis, bioassay, metabolite profiling, and molecular docking of marine sediment actinobacteria strain GMY01. The whole-genome sequence analysis revealed that Streptomyces sp. GMY01 (7.9 Mbp) is most similar to Streptomyces sennicomposti strain RCPT1-4^T with an average nucleotide identity (ANI) and ANI based on BLAST+ (ANIb) values of 98.09 and 97.33% (>95%). An in vitro bioassay of the GMY01 bioactive on Plasmodium falciparum FCR3, cervical carcinoma of HeLa cell and lung carcinoma of HTB cells exhibited moderate activity (IC₅₀ value of 46.06; 27.31 and 33.75 µg/mL) with low toxicity on Vero cells as a normal cell (IC₅₀ value of 823.3 µg/mL). Metabolite profiling by LC-MS/MS analysis revealed that the active fraction of GMY01 contained carbohydrate-based compounds, C17H29NO14 (471.15880 Da) as a major compound (97.50%) and mannotriose (C18H32O16; 504.16903 Da, 1.96%) as a minor compound. Molecular docking analysis showed that mannotriose has a binding affinity on glutathione reductase (GR) and glutathione-S-transferase (GST) of P. falciparum and on autophagy proteins (mTORC1 and mTORC2) of cancer cells. Streptomyces sennicomposti GMY01 is a potential bacterium producing carbohydrate-based bioactive compounds with anti-plasmodial and anticancer activities and with low toxicity to normal cells. Full article

This study aimed to test the hypothesis of the year-round presence of toxigenic Microcystis and cyanotoxins in the water and ice of the shallow eutrophic Lake Ytyk-Kyuyol located in the continuous permafrost zone. Three independent approaches—mass-spectrometry, molecular methods and light microscopy—were applied in the study. The cyanobacterial biomass ranged from 1.0 × 10⁻⁴ to 4.8 mg L⁻¹. Microcystis flos-aquae and M. aeruginosa were the dominant morphospecies in plankton throughout the observation. In environmental DNA, the presence of M. aeruginosa was supported and mcy gene regions responsible for microcystin biosynthesis were detected through a BLAST (Basic Local Alignment Search Tool) search and phylogenetic estimation based on newly obtained 16S rRNA, 16S–23S ITS rRNA, mcyA and mcyE nucleotide sequences. The intracellular microcystin concentration ranged from <0.1 to 803 ng L⁻¹, and the microcystin quota in the Microcystis biomass was extremely low. For the first time, it was shown that Microcystis cells containing mcy genes and microcystins presented permanently in the water column, both during the ice-free period and under ice, as well as inside thick ice covers within 7 months of severe winter. We hypothesized that minor pelagic and ice populations of Microcystis could participate in increasing cell density in the spring. However, further studies are needed to confirm the viability of the overwintering Microcystis colonies in the water and inside the ice of Lake Ytyk-Kyuyol. Full article

The prognosis of acute myeloid leukemia (AML) remains unsatisfactory. Among the reasons for the poor response to therapy and high incidence of relapse, there is tumor cell immune escape, as AML blasts can negatively influence various components of the immune system, mostly weakening T-cells. Since leukemic cells can dysregulate immune checkpoints (ICs), receptor-based signal transductors that lead to the negative regulation of T-cells and, eventually, to immune surveillance escape, the inhibition of ICs is a promising therapeutic strategy and has led to the development of so-called immune checkpoint inhibitors (ICIs). ICIs, in combination with conventional chemotherapy, hypomethylating agents or targeted therapies, are being increasingly tested in cases of AML, but the results reported are often conflicting. Here, we review the main issues concerning the immune system in AML, the main pathways leading to immune escape and the results obtained from clinical trials of ICIs, alone or in combination, in newly diagnosed or relapsed/refractory AML. Full article

The interfacial adhesion, friction, and resulting tool-part interaction during composites manufacturing contribute to the formation of residual stresses and process-induced deformations (PIDs). Tool-part interaction and PIDs are highly sensitive to processing variabilities, one of which is the aging of the release coating and the surface condition of production tools. Unfortunately, due to a lack of available tool inspection methods, manufacturers often attempt to mitigate the aging of release coating based on know-how, leading to cost-deficient tool preparation schedules, lower end-part quality, and in some cases, higher levels of PIDs. This paper presents an in-situ inspection method to evaluate the physicochemical properties of release coating and the surface condition of large production tools by utilizing global mapping, sparse sensing, and machine learning (ML). ML methods are used in conjunction with multiple automated measurement techniques to quickly identify the condition of release coating or contamination on production tool surfaces in manufacturing environments. Results in this paper demonstrate that during autoclave processing, aerospace-grade release coatings undergo significant chemical changes, but may remain highly abhesive for more than twenty autoclave processing cycles. Using the proposed novel inspection technology, dry ice blasting (DIB) is also demonstrated to be an effective method for non-abrasively removing cured resin contamination and release coating from a tool surface. Overall, this paper demonstrates how the proposed inspection method can be integrated into a manufacturing process for automatic surface inspection of large tools to improve production efficiency and potentially mitigate PIDs in composites manufacturing. Full article