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29 pages, 3025 KB  
Article
Trust Triangle: A Reliability-Validity-Generation Framework for Explainable Credit Card Fraud Detection with RAG-Enhanced LLMs Reasoning
by Jin-Ching Shen, Nai-Ching Su and Yi-Bing Lin
AI 2026, 7(3), 114; https://doi.org/10.3390/ai7030114 - 19 Mar 2026
Viewed by 1144
Abstract
We propose Trust Triangle, a Bridging Methodology that establishes evidential reliability through multi-attribution consensus, ensures external validity via statistical hypothesis testing, and enables controlled generation with RAG-anchored LLMs to transform black-box predictions into trustworthy, auditable explanations. This framework is instantiated for credit [...] Read more.
We propose Trust Triangle, a Bridging Methodology that establishes evidential reliability through multi-attribution consensus, ensures external validity via statistical hypothesis testing, and enables controlled generation with RAG-anchored LLMs to transform black-box predictions into trustworthy, auditable explanations. This framework is instantiated for credit card fraud detection by integrating multi-method feature attributions with rigorous statistical validation. The resulting reliability-validity-verified insights are synthesized with high-relevance domain knowledge (relevance score > 0.7) retrieved from a real-world corpus via Retrieval-Augmented Generation (RAG). A structured Chain-of-Thought (CoT) prompt then guides an LLM to produce coherent, audit-ready case reports. Our contributions are threefold: (1) a verifiable framework for quantifying attribution reliability and validity, (2) a demonstrated end-to-end pipeline from robust prediction to semantically grounded explanation, and (3) a generalizable paradigm for Trustworthy ML in high-stakes domains. Experiments on a highly imbalanced dataset (fraud rate: 8.74%) demonstrate robust performance (PR-AUC = 0.7867), successfully identify statistically significant predictive features, and generate audit-ready reports, thereby advancing a rigorous, evidence-based pathway from model output to decision-ready support. Full article
(This article belongs to the Section AI Systems: Theory and Applications)
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9 pages, 454 KB  
Article
Association Between Vertical Bone Defects and Interdental Papilla Loss in Periodontitis: A Cross-Sectional Analysis
by Hristina Maynalovska and Kamen Kotsilkov
Dent. J. 2025, 13(7), 294; https://doi.org/10.3390/dj13070294 - 29 Jun 2025
Cited by 2 | Viewed by 2555
Abstract
Background: The interdental papilla plays a critical role in maintaining both the esthetic and functional integrity of the periodontium. Although the relationship between the papilla presence and the contact point–bone crest distance is well established, the impact of vertical bone defect morphology—common in [...] Read more.
Background: The interdental papilla plays a critical role in maintaining both the esthetic and functional integrity of the periodontium. Although the relationship between the papilla presence and the contact point–bone crest distance is well established, the impact of vertical bone defect morphology—common in periodontitis—remains largely unexplored. Aim: To assess the relationship between the loss of interdental papilla height and three site-specific factors—vertical bone defect morphology, probing depth, and papilla base width—in patients with periodontitis. Materials and Methods: Ten periodontitis patients contributing 28 interdental papillae adjacent to vertical bone defects were included. The recorded parameters included probing depth, papilla base width, and loss of papilla height. Intraoperative measurements of defect depth, mesiodistal width, and buccolingual width were also obtained. Patient-level variables, such as age, sex, oral hygiene, and gingival phenotype, were not controlled or included in the analysis, due to the small number of participants and the study’s focus on defect-level characteristics. Spearman’s rank correlation was used due to non-normal data distribution. Results: A moderate positive association was observed between the probing depth and loss of papilla height (ρ = 0.353), approaching but not reaching statistical significance (p = 0.066). Weak, non-significant associations were found with the remaining parameters (p > 0.05). Conclusions: Although no statistically significant associations were found, observed trends may indicate site-specific influences on the loss of papilla height. These preliminary findings highlight the need for further research with larger, well-characterized cohorts to better understand the factors affecting papilla stability in periodontitis. Full article
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20 pages, 6323 KB  
Article
Identification of the Cinnamyl Alcohol Dehydrogenase Gene Family in Brassica U-Triangle Species and Its Potential Roles in Response to Abiotic Stress and Regulation of Seed Coat Color in Brassica napus L.
by Yiwei Liu, Ziwuyun Weng, Yuanyuan Liu, Mengjiao Tian, Yaping Yang, Nian Pan, Mengzhen Zhang, Huiyan Zhao, Hai Du, Nengwen Yin, Cunmin Qu and Huafang Wan
Plants 2025, 14(8), 1184; https://doi.org/10.3390/plants14081184 - 10 Apr 2025
Cited by 7 | Viewed by 2456
Abstract
Cinnamyl alcohol dehydrogenase (CAD) is essential for lignin precursor synthesis and responses to various abiotic stresses in plants. However, the functions of CAD in Brassica species, especially in Brassica napus, remain poorly characterized. In the present study, we identified a total of [...] Read more.
Cinnamyl alcohol dehydrogenase (CAD) is essential for lignin precursor synthesis and responses to various abiotic stresses in plants. However, the functions of CAD in Brassica species, especially in Brassica napus, remain poorly characterized. In the present study, we identified a total of 90 CAD genes across the Brassica U-triangle species, including B. rapa, B. nigra, B. oleracea, B. juncea, B. napus, and B. carinata. Comprehensive analyses of phylogenetic relationships, sequence identity, conserved motifs, gene structure, chromosomal distribution, collinearity, and cis-acting elements were performed. Based on phylogenetic analysis, these genes were categorized into four groups, designated as groups I to IV. Most of the CAD genes were implicated in mediating responses to abiotic stresses and phytohormones. Notably, members in group III, containing the bona fide CAD genes, were directly involved in lignin synthesis. Furthermore, the expression profiles of BnaCAD genes exhibited differential responses to drought, osmotic, and ABA treatments. The expression levels of the BnaCAD4a, BnaCAD4b, BnaCAD5b, and BnaCAD5d genes were detected and found to be significantly lower in yellow-seeded B. napus compared to the black-seeded ones. This study provides a comprehensive characterization of CAD genes in Brassica U-triangle species and partially validates their functions in B. napus, thereby contributing to a better understanding of their roles. The insights gained are expected to facilitate the breeding of yellow-seeded B. napus cultivars with enhanced stress tolerance and desirable agronomic traits. Full article
(This article belongs to the Special Issue Bioinformatics and Functional Genomics in Modern Plant Science)
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13 pages, 2228 KB  
Opinion
Identifying Key Factors in Papilla Growth Around Implants: Focus on Intraoral Negative Pressure
by Daniele Botticelli, Ivo Agabiti, Rihito Yamada, Nozomi Maniwa, Karol Alí Apaza Alccayhuaman and Yasushi Nakajima
Dent. J. 2025, 13(3), 124; https://doi.org/10.3390/dj13030124 - 13 Mar 2025
Cited by 2 | Viewed by 4548
Abstract
The absence of interdental papillae in dental prosthetics often leads to unsatisfactory esthetic outcomes, such as black triangles and elongated clinical crowns. While previous research has demonstrated that papillae can regenerate in a coronal direction, the underlying mechanisms remain incompletely understood. Several theories [...] Read more.
The absence of interdental papillae in dental prosthetics often leads to unsatisfactory esthetic outcomes, such as black triangles and elongated clinical crowns. While previous research has demonstrated that papillae can regenerate in a coronal direction, the underlying mechanisms remain incompletely understood. Several theories have been proposed to explain this phenomenon, but no clear cause–effect relationship has been established among the various factors involved in spontaneous papilla growth around implants. This study aims to identify and classify the factors influencing this process. Various potential contributors were analyzed, including adjacent elements, buccal–lingual papilla width, contact point position, convergent neck design, crown overcontour, intraoral negative pressure, and others. To systematically organize these factors, a modified Overton Window and a mind map were employed. The factors were categorized as cause-related, essential, or influencing based on the collective opinion of the research group following a comprehensive review of the relevant literature. In the absence of clear evidence supporting a definitive cause–effect relationship, Occam’s Razor (the principle of parsimony) was applied to identify the most plausible cause-related factors. Full article
(This article belongs to the Special Issue Dentistry in the 21st Century: Challenges and Opportunities)
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19 pages, 13218 KB  
Article
Genome-Wide Identification Analysis of the 4-Coumarate: Coa Ligase (4CL) Gene Family in Brassica U’s Triangle Species and Its Potential Role in the Accumulation of Flavonoids in Brassica napus L.
by Mengzhen Zhang, Mengjiao Tian, Ziwuyun Weng, Yaping Yang, Nian Pan, Shulin Shen, Huiyan Zhao, Hai Du, Cunmin Qu and Nengwen Yin
Plants 2025, 14(5), 714; https://doi.org/10.3390/plants14050714 - 26 Feb 2025
Cited by 4 | Viewed by 2503
Abstract
4-Coumarate: CoA ligase (4CL) is a key branch point enzyme at the end of the phenylpropanoid metabolic pathway. It regulates the synthesis of various metabolites and participates in plant growth and development by catalyzing the formation of CoA ester compounds. However, 4CL family [...] Read more.
4-Coumarate: CoA ligase (4CL) is a key branch point enzyme at the end of the phenylpropanoid metabolic pathway. It regulates the synthesis of various metabolites and participates in plant growth and development by catalyzing the formation of CoA ester compounds. However, 4CL family members have not been identified and analyzed among U’s triangle species in Brassica. In this study, 53 4CL genes were identified in Brassica U’s triangle species and divided into 4 groups (group I, II, III and IV) according to phylogenetic relationship. Based on phylogenetics, gene structure, conserved motifs, chromosome localization and collinearity analysis, 4CLs were relatively conserved in the evolution of Brassica U’s triangle species. The promoter region contains a large number of cis-acting elements, implying the functional diversity of 4CLs. Further combining transcriptome data and reverse transcription quantitative PCR (RT-qPCR), we found that Bna4CLs have tissue specificity and can not only respond to exogenous phytohormone changes but also regulate the flavonoid biosynthetic pathway in the yellow- and black-seeded B. napus. Our results complement the lack of research on the 4CL gene family in Brassica, clarify the sequence characteristics and functional diversity of these genes and lay a foundation for further exploration of 4CL genes in response to abiotic stress and regulation of seed coat flavonoid accumulation. Full article
(This article belongs to the Special Issue Bioinformatics and Functional Genomics in Modern Plant Science)
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13 pages, 1847 KB  
Article
The Occurrence and Risk Factors of Black Triangles Between Central Incisors After Orthodontic Treatment
by Ji-Song Jung, Ho-Kyung Lim, You-Sun Lee and Seok-Ki Jung
Diagnostics 2024, 14(23), 2747; https://doi.org/10.3390/diagnostics14232747 - 6 Dec 2024
Cited by 5 | Viewed by 4566
Abstract
Background/Objectives: To assess the incidence of and risk factors for black triangles between the central incisors after orthodontic treatment; Methods: Ninety-seven post-treatment patients (29 men and 68 women; mean age, 22.7 years) were retrospectively divided into two groups based on the presence or [...] Read more.
Background/Objectives: To assess the incidence of and risk factors for black triangles between the central incisors after orthodontic treatment; Methods: Ninety-seven post-treatment patients (29 men and 68 women; mean age, 22.7 years) were retrospectively divided into two groups based on the presence or absence of black triangles, using intraoral photographs. Based on the Jemt Index, the black triangle occurrence group was further classified into mild, moderate, and severe groups. Parameters from periapical radio graphs, lateral cephalograms, and study models were compared between the occurrence and the non-occurrence groups by using independent t-tests. Logistic regression analysis was performed to identify the risk factors for black triangles; Results: The incidence of black triangles between the central incisors was 51% and 64% in the maxilla and in the mandible, respectively. The factors significantly associated with the occurrence of black triangles were age, treatment duration, the lingual inclination of the maxillary incisors in the maxilla, and age in the mandible (p < 0.05); Conclusions: This study showed the diverse risk factors associated with black triangles between central incisors after orthodontic treatment and revealed that the formation of black triangles is relatively common. Considering these risk factors during orthodontic diagnosis and treatment planning can help minimize the occurrence of black triangles. Full article
(This article belongs to the Special Issue Advances in the Diagnosis of Oral and Maxillofacial Disease)
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20 pages, 408 KB  
Article
String Invention, Viable 3-3-1 Model, Dark Matter Black Holes
by Holger B. Nielsen
Entropy 2024, 26(10), 830; https://doi.org/10.3390/e26100830 - 30 Sep 2024
Cited by 3 | Viewed by 1611
Abstract
With our very limited memories, we provide a brief review of Paul Frampton’s memories of the discovery of the Veneziano model, with this indeed being string theory, with Y. Nambu, and, secondly, his 3-3-1 theory. The latter is, indeed, a non-excluded replacement for [...] Read more.
With our very limited memories, we provide a brief review of Paul Frampton’s memories of the discovery of the Veneziano model, with this indeed being string theory, with Y. Nambu, and, secondly, his 3-3-1 theory. The latter is, indeed, a non-excluded replacement for the Standard Model with triangle anomalies being cancelled, as they must in a truly viable theory. It even needs (essentially) three as the family number! Moreover, primordial black holes as dark matter is mentioned. We end with a review of my own very speculative, utterly recent idea that for the purpose of the classical approximation, we could, using the functional integral as our rudimentary assumption taken over from quantum mechanics, obtain the equations of motion without the, in our opinion, very mysterious imaginary unit i, which usually occurs as a factor in the exponent of the functional integrand, which is this i times the action. The functional integral without the mysterious i leads to the prediction of some of the strongest features in cosmology, and also seems to argue for as few black holes as possible and for the cosmological constant being zero. Full article
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18 pages, 1702 KB  
Article
Fertilizer Price Surge in Poland and Beyond: Seeking the Way Forward towards Sustainable Development
by Aleksandra Kowalska, Mateusz Hałka, Anna Budzyńska, Mariusz Kicia and Konrad Terpiłowski
Sustainability 2024, 16(16), 6943; https://doi.org/10.3390/su16166943 - 13 Aug 2024
Cited by 7 | Viewed by 5759
Abstract
The aim of this study is to explore the impact of the main determinants on the rapid increase in fertilizer prices in Poland and to foresee the consequences of this situation regarding sustainable policy developments. We developed linear regression models for N, P, [...] Read more.
The aim of this study is to explore the impact of the main determinants on the rapid increase in fertilizer prices in Poland and to foresee the consequences of this situation regarding sustainable policy developments. We developed linear regression models for N, P, and K fertilizers to show the direction of influence of explaining variables and make a decomposition of the fertilizer price increases. The models illustrate that four major factors were responsible for the fertilizer price increases in Poland in 2020–2022, i.e., wheat, gas, GHGE allowance prices, and domestic production volumes. These factors explained the variation in the price of fertilizers concerned with different strengths. There were also other impacts associated with the ‘black swans’ occurrence (the COVID-19 pandemic and the war in Ukraine). High mineral fertilizer prices provide an opportunity to revise agricultural policy and legislation, taking into account environmental concerns and the latest technological developments. Fertilizer management practices are at the center of a triangle of critical objectives that track the progress toward sustainable agricultural systems, such as (1) an increase in farm incomes, (2) environmental protection, and (3) food and nutrition security. We recommend adjusting the set of explaining variables in the models (i.e., wheat/corn price) to the specificities of the domestic agri-food system. This study provides important guidance for agricultural policymaking, emphasizing the need to integrate sustainable fertilizer management practices to achieve synergies between economic growth, environmental protection, and food security. Such an approach can support the long-term development of agriculture in Poland and contribute to the economic and environmental stability of the agricultural sector. Full article
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20 pages, 48291 KB  
Article
Impact of the Russia–Ukraine Conflict on Global Marine Network Based on Massive Vessel Trajectories
by Lin Cong, Hengcai Zhang, Peixiao Wang, Chen Chu and Jinzi Wang
Remote Sens. 2024, 16(8), 1329; https://doi.org/10.3390/rs16081329 - 10 Apr 2024
Cited by 25 | Viewed by 8528
Abstract
Maritime transportation plays a vital role in global trade, and studying the resilience of the global maritime network is crucial for ensuring its sustainable development. Currently, the ongoing conflict between Russia and Ukraine has garnered significant global attention. However, there is a lack [...] Read more.
Maritime transportation plays a vital role in global trade, and studying the resilience of the global maritime network is crucial for ensuring its sustainable development. Currently, the ongoing conflict between Russia and Ukraine has garnered significant global attention. However, there is a lack of specific research on the impact of the conflict on maritime shipping, particularly the resilience of the global maritime network. This paper proposes a resilience assessment framework under the influence of significant events by combining complex network metrics and network performance indicators from the resilience triangle model. It quantitatively evaluates the resilience changes in the global maritime network before and after the outbreak of the Russia–Ukraine conflict. The experiment utilizes real automatic identification system (AIS) maritime trajectory data to quantify and visualize the changes in global maritime traffic during a 20-day period before and after the conflict, constructing the global maritime network for resilience calculations. The research findings indicate the following changes occurred after the Russia–Ukraine conflict. Firstly, the global maritime industry experienced overall growth, with increased ship transportation between ports. Transportation in certain regions was negatively affected, with a significant decrease in ship activities in the Black Sea and Adriatic Sea areas. The positions of Russia and Ukraine in the world maritime industry noticeably declined. Secondly, the network connectivity, network size, and network density of the global maritime network significantly increased, indicating an enhanced network resilience. According to our quantitative results, from a topological perspective, we observed the following changes: network connectivity increased by 27.2%, network scale increased by 36.6%, network density increased by 32.4%, and network resilience increased by 18.6%. Thirdly, the global maritime network is characterized by a high degree of heterogeneity, and the impact of conflicts on the heterogeneity of the shipping network is not significant. Finally, the network exhibited a slower performance decline under random attacks, while deliberate attacks led to a sharp decline. Due to the adaptive nature of the maritime network, the resilience of the network improves in terms of its topology following the outbreak of conflicts. After conflict incidents, the rate of performance decline during simulated attacks is lower compared to the pre-conflict period. Full article
(This article belongs to the Section Ecological Remote Sensing)
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11 pages, 1465 KB  
Article
Intense Short-Video-Based Social Media Use reduces the P300 Event-Related Potential Component in a Visual Oddball Experiment: A Sign for Reduced Attention
by Peter Walla and Yu Zheng
Life 2024, 14(3), 290; https://doi.org/10.3390/life14030290 - 22 Feb 2024
Cited by 10 | Viewed by 9652
Abstract
The birth and following growth of social media platforms has influenced a lot. In addition to beneficial features, it has long-been noticed that heavy consumption of social media can have negative effects beyond a simple lack of time for other things. Of particular [...] Read more.
The birth and following growth of social media platforms has influenced a lot. In addition to beneficial features, it has long-been noticed that heavy consumption of social media can have negative effects beyond a simple lack of time for other things. Of particular interest is the idea that consuming short videos lasting only fractions of a minute and watched one after another can lead to deficits in concentration and attention. Completing the existing literature that already reports evidence for attention deficits related to heavy social media use, the present study aims to contribute to this acute topic by adding neurophysiological data to it. In particular, this study made use of a well-known experimental paradigm, which is able to detect attention-related changes on a neurophysiological level. The so-called oddball paradigm was applied and the hypothesis that heavy social media users mainly consuming short videos show a reduced P300 event-related potential (ERP) component was tested, which has been found to reflect attention-related brain functions. For this, we invited twenty-nine participants and designed a visual oddball experiment including a white circle on black background as the low-frequency target stimulus and a white triangle on black background as the high-frequency non-target stimulus. On the basis of their self-reported short-video-based social media usage habits, all participants were grouped into heavy (more than 4 h daily usage) and regular (below 3 h daily usage) users, and finally data from 14 heavy and 15 regular users were further analyzed. It was found that only regular users show a clear P300 ERP component, while this particular brain potential amplitude reflecting attentional processes was significantly reduced in heavy users. This result provides empirical brain imaging evidence that heavy short-video-based social media use indeed affects attentional brain processes in a negative way. Full article
(This article belongs to the Section Medical Research)
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16 pages, 404 KB  
Article
Orthodontic Risk Perspectives among Orthodontists during Treatment: A Descriptive Pilot Study in Greece and Slovakia
by Franzeska Karkazi, Maria Antoniadou, Katarína Demeterová, Dimitrios Konstantonis, Vasileios Margaritis and Juraj Lysy
Healthcare 2024, 12(4), 492; https://doi.org/10.3390/healthcare12040492 - 18 Feb 2024
Cited by 3 | Viewed by 4565
Abstract
This study explores orthodontists’ perspectives on risks associated with orthodontic treatment, as described by Greek and Slovak orthodontists. Informed by the foundational importance of effective communication of risk perspectives in health sciences, particularly in facilitating valid consent and shared decision-making, this research addresses [...] Read more.
This study explores orthodontists’ perspectives on risks associated with orthodontic treatment, as described by Greek and Slovak orthodontists. Informed by the foundational importance of effective communication of risk perspectives in health sciences, particularly in facilitating valid consent and shared decision-making, this research addresses gaps identified in the literature concerning the consistent communication of potential treatment risks based on demographic and cultural characteristics. This study identifies 15 potential critical risks during orthodontic treatment. These risks include root resorption; temporary undesired changes to the occlusion; sleep difficulties; not achieving an ideal result; development of black triangles between teeth; taking additional X-rays; speech difficulties; using a protective splint during sports; duration of treatment; number of visits; transmission of infectious diseases; and swallowing orthodontic appliances. A questionnaire, distributed electronically to orthodontists in Greece (N1 = 570) and Slovakia (N2 = 210) from September 2022 to December 2022, aimed to assess risk communication practices, taking into consideration socio-demographic factors, such as country, gender, age, and academic-degree-related variations. A total of 168 valid questionnaires (91 from Slovakia and 77 from Greece) were obtained, indicating significant disparities in the risks emphasized and preferred forms of consent. The Greek orthodontists focused more on the risks involved, such as relapse, root resorption, temporal occlusal changes, and failure of desired movement, while the Slovak practitioners tended to be more interested in sleeping difficulties, temporal occlusal changes, and not achieving an ideal result. They also obtained written or digital consent from patients or their parents/guardians more frequently than the Greek team. Male orthodontists discussed specific risks more frequently, including relapse and extractions, whereas females preferred written or digital consent. PhD-trained orthodontists prioritized certain risks, indicating the need for tailored approaches. This study underscores the dynamic nature of risk assessment in orthodontic practice, emphasizing its ethical and strategic dimensions. The findings advocate for tailored risk communication strategies that recognize individual, contextual, and cultural factors, and the need for an orthodontic informed consent protocol for a tailored communication approach for patients to elevate the standard of care in European orthodontics. The reliance on digital tools reflects contemporary trends in enhancing patient understanding, thereby supporting ongoing innovation in orthodontic practices. Full article
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14 pages, 472 KB  
Article
Active Pharmacovigilance Study: A Follow-Up Model of Oral Anti-Cancer Drugs under Additional Monitoring
by Sofia Pinto Carvalho da Silva, Mafalda Jesus, Fátima Roque, Maria Teresa Herdeiro, Rita Costa e Sousa, Ana Paula Duarte and Manuel Morgado
Curr. Oncol. 2023, 30(4), 4139-4152; https://doi.org/10.3390/curroncol30040315 - 11 Apr 2023
Cited by 4 | Viewed by 4898
Abstract
Adverse drug reactions (ADRs) are responsible for almost 5% of hospital admissions, making it necessary to implement different pharmacovigilance strategies. The additional monitoring (AM) concept has been highlighted and intended to increase the number of suspected ADRs reported, namely in medicines with limited [...] Read more.
Adverse drug reactions (ADRs) are responsible for almost 5% of hospital admissions, making it necessary to implement different pharmacovigilance strategies. The additional monitoring (AM) concept has been highlighted and intended to increase the number of suspected ADRs reported, namely in medicines with limited safety data. A prospective, descriptive study of active pharmacovigilance (AP) was conducted between 2019 and 2021 in the Local Health Unit of Matosinhos (LHUM) (Porto, Portugal). A model of AP for medicines under AM, namely oral antineoplastic agents, was designed. Follow-up consultations were performed, and adverse events (AEs) data were collected. The overall response to the treatment was evaluated through the Response Evaluation Criteria in Solid Tumors (RECIST) 1.1 criteria. A total of 52 patients were included in the study, and 14 antineoplastic drugs under AM were analyzed. Of the total number of patients included, only 29 developed at least one type of toxicity. Hematological disorders were the most reported suspected ADR. However, only four patients interrupted their treatment due to toxicity. After 12 months of treatment, most patients had disease progression, which was the main reason for therapy discontinuation. This AP model played an important role in the early detection of AEs and, consequently, contributed to better management of them. Increasing the number of suspected ADR reports is crucial for drugs with limited safety data. Full article
(This article belongs to the Section Medical Oncology)
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17 pages, 4325 KB  
Article
Bovine HOXA11 Gene Identified from RNA-Seq: mRNA Profile Analysis and Genetic Variation Detection Using ME Method and Their Associations with Carcass Traits
by Yangming Huang, Kejing Zhang, Yafang Li, Sihuan Zhang, Zhanerke Akhatayeva, Fugui Jiang, Enliang Song and Xianyong Lan
Cells 2023, 12(4), 539; https://doi.org/10.3390/cells12040539 - 8 Feb 2023
Viewed by 2721
Abstract
The Homeobox A11 (HOXA11) gene regulates limb skeletal development and muscle growth, thus, it was selected as a candidate gene for bovine carcass traits. In this study, we analyzed the mRNA expression level of HOXA11 in various tissues and cells, and [...] Read more.
The Homeobox A11 (HOXA11) gene regulates limb skeletal development and muscle growth, thus, it was selected as a candidate gene for bovine carcass traits. In this study, we analyzed the mRNA expression level of HOXA11 in various tissues and cells, and determined the genetic variations in the HOXA11 gene, which might be used as molecular markers for cattle breeding. The mRNA expression profiles of HOXA11 in bovine different tissues showed that HOXA11 was highly expressed in both fat and muscle. The gene expression trend of HOXA11 in myoblasts and adipocytes indicated that HOXA11 might be involved in the differentiation of bovine myoblasts and adipocytes. The data in the Ensembl database showed that there are two putative insertion/deletion (InDel) polymorphisms in the bovine HOXA11 gene. The insertion site (rs515880802) was located in the upstream region (NC_037331.1: g. 68853364-68853365) and named as P1-Ins-4-bp, and the deletion site (rs517582703) was located in the intronic region (NC_037331.1: g. 68859510-68859517) and named as P2-Del-8-bp. These polymorphisms within the HOXA11 gene were identified and genotyped by PCR amplification, agarose gel electrophoresis and DNA sequencing in the 640 Shandong Black Cattle Genetic Resource (SDBCGR) population. Moreover, the mutation frequency was very low after detection, so the mathematical expectation (ME) method was used for detection. Statistical analysis demonstrated that P1-Ins-4-bp was significantly correlated with the beef shoulder (p = 0.012) and tongue root (p = 0.004). Meanwhile, P2-Del-8-bp displayed a significant correlation with the back tendon (p = 0.008), money tendon (p = 2.84 × 10-4), thick flank (p = 0.034), beef shin (p = 9.09 × 10-7), triangle thick flank (p = 0.04), triangle flank (p = 1.00 × 10-6), rump (p = 0.018) and small tenderloin (p = 0.043) in the female SDBCGR population. In summary, these outcomes may provide a new perspective for accelerating the molecular breeding of cattle through marker-assisted selection (MAS) strategies. Full article
(This article belongs to the Section Cell and Gene Therapy)
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9 pages, 683 KB  
Article
Comparison of Root Parallelism in Extraction Cases Treated with Clear Aligners vs. Fixed Appliances
by Tianjin Tao, Hengyan Liang, Xinyu Yan, Qi Fan, Qingsong Jiang, Fan Jian, Hu Long and Wenli Lai
Appl. Sci. 2022, 12(22), 11756; https://doi.org/10.3390/app122211756 - 18 Nov 2022
Cited by 19 | Viewed by 7782
Abstract
In the process of orthodontic treatment, root parallelism is related to the relapse of extraction spaces, black triangles, and periodontal health. However, there are few studies on root parallelism in extraction cases with different types of appliances. The objective was to compare the [...] Read more.
In the process of orthodontic treatment, root parallelism is related to the relapse of extraction spaces, black triangles, and periodontal health. However, there are few studies on root parallelism in extraction cases with different types of appliances. The objective was to compare the root parallelism in extraction cases treated with clear aligners vs. those treated with fixed appliances by measuring the differences per extraction site and to access the root-movement control capacity of both orthodontic appliances. A retrospective study was conducted on cases in which the first premolars were extracted, treated by clear aligner appliance (“Invisalign” system, 28 patients) or fixed appliance (30 patients). The angulations of the tooth axis (canines, the second premolars, the first molars, and the second molars) were measured to analyze and compare the difference in root parallelism between the two orthodontic appliances. The percentage of root parallelism between the canine and second premolar in both groups had no significant difference. However, judging from the average angle difference value, the fixed appliance might have a greater range in root angulation adjustment than the aligner. In the angulation categories, the aligner mainly showed root apical divergence, while the fixed appliance mainly showed root apical convergence. The dental crown of the molars was mainly non-tipping in both groups, but it could be observed that the dental crown of the maxillary molars had a tendency toward mesial inclination. In conclusion, the same root parallelism and root inclination were obtained in tooth extraction cases whether treated by clear aligners or fixed appliances. This study provides clinicians with more information on the performance of clear aligners and fixed appliances. Full article
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9 pages, 2920 KB  
Article
Interdental Papillary Reconstruction by Microtunnelling Technique Using Autologous Biomatrices—A Randomised Controlled Clinical Trial
by Sindhura Gadi, Sangeetha Subramanian, P. S. G. Prakash, Devapriya Appukuttan, Abirami Thanigaimalai, Maha A. Bahammam, Khalid J. Alzahrani, Khalaf F. Alsharif, Ibrahim F. Halawani, Mrim M. Alnfiai, Thodur Madapusi Balaji and Shankargouda Patil
Medicina 2022, 58(10), 1326; https://doi.org/10.3390/medicina58101326 - 22 Sep 2022
Cited by 10 | Viewed by 6737
Abstract
Background and objectives: The study aimed to evaluate and compare the amount of papillary gain and black triangle height reduction after intervention with a microtunnelling technique with either Connective tissue graft (CTG) or Platelet-rich fibrin (PRF) as a biomatrix at 6 months [...] Read more.
Background and objectives: The study aimed to evaluate and compare the amount of papillary gain and black triangle height reduction after intervention with a microtunnelling technique with either Connective tissue graft (CTG) or Platelet-rich fibrin (PRF) as a biomatrix at 6 months using a microsurgical approach. Materials and Methods: Twenty-six patients with interdental papillary loss were included in the study. The patients were selected randomly for the study groups with thirteen patients in each group: a control group where CTG was utilised as a matrix, and a test group where PRF was utilised as a matrix, for interdental papillary reconstruction. A microtunnelling technique was performed for both the study groups under a surgical microscope. The primary parameters assessed were interdental Papillary height (PH) and Black triangle height (BTH) at baseline, with secondary parameters Visual analogue score by dentist (VAS-D) and patient (VAS-P) assessed at 6 months. Results: Both the control and test groups showed a significant reduction in BTH within their respective group at six months (p < 0.05). The gain in papillary height significantly improved only in the CTG group at 6 months. However, significant differences could not be demonstrated for any of the variables such as BTH (p value = 0.582) and PH (p-value = 0.892) between the study groups at 6 months. Conclusions: IDP reconstruction utilising a microtunnelling approach with CTG or PRF was successful without any significant differences between the groups for the parameters assessed at 6 months. Full article
(This article belongs to the Collection New Concepts for Dental Treatments and Evaluations)
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