Search Results (33)

Medicine food homology (MFH) plants are rich in nutrients and bioactive specialized metabolites, and their endophytic fungi mediate key biotransformation of host secondary metabolites. Licorice, a representative MFH herb, accumulates glycyrrhizin (GL) as its dominant bioactive triterpenoid saponin. Its hydrolysates glycyrrhetinic acid (GA) and glycyrrhetinic acid 3-O-mono-β-D-glucuronide (GAMG) show stronger bioactivity and bioavailability than GL. However, the enzymatic mechanisms of licorice-derived endophytic fungi-mediated GL biotransformation remain unclear. Here, nine licorice endophytic fungi were screened for significant GL-inducible β-glucuronidase activity. Four functional GH2 β-glucuronidase were obtained by prokaryotic and eukaryotic expression systems, and confirmed to catalyze glycyrrhizin biotransformation via two distinct hydrolytic pathways. Inoculation of these four strains into licorice markedly enhanced host glycyrrhizin accumulation. This study provides novel enzymatic resources for the efficient bioproduction of high-value glycyrrhizin derivatives, and proposes a green strategy to improve glycyrrhizin content in licorice, deepening the understanding of endophyte–host metabolic crosstalk in medicinal herbs. Full article

Probiotics are known to improve gut microbiota balance, enhance food digestion, and support overall health. Among these, Bacillus species are particularly promising due to their safety, spore-forming ability, environmental resilience, and diverse enzymatic activities. However, most Bacillus probiotics used in industry are of terrestrial origin, leaving marine-derived strains largely unexplored. Utilising the untapped potential of marine microbial biomass, this study presents a multi-stage methodology for identifying and evaluating marine-derived Bacillus strains with probiotic potential. A structured screening pipeline was applied to 67 microbial isolates from the Great Barrier Reef sponges. Initial selection focused on essential probiotic characteristics, including growth, stability, safety, and survival under gastrointestinal conditions. Strains meeting these criteria were then assessed for desirable properties, including digestive enzyme production and pathogen inhibition. Using this workflow, three marine-derived Bacillus strains were identified as potential probiotics, one of which demonstrated strong antimicrobial activity against Salmonella enterica at 5 and 10 mg/mL (p < 0.01). These findings demonstrate the capability of marine-associated Bacillus as novel bioproducts with functional antimicrobial properties. Full article

Macroalgal species are widely distributed throughout the world’s oceans and are well recognised for their biotechnological, ecological, and pharmacological potentials, containing a wide range of diverse bioactive compounds. In many coastal habitats worldwide, excessive accumulations of algal biomass (including rapidly growing blooms and drift accumulations resulting from dislodgement from benthic habitats) are commonplace and can pose environmental and economic challenges. In this study, we report occurrences of algal blooms and drift accumulations during 2024 and 2025 involving three major macroalgal clades, Chlorophyta, Phaeophyceae, and Rhodophyta, from two distinct marine regions: the North Atlantic Ocean and the South Pacific Ocean. Species identified included Grateloupia turuturu, Polyides rotundus, Ascophyllum nodosum, Ulva spp., Sargassum spp. and Fucus spp., among others. The indicated species are known for their diverse pharmacological properties, including antimicrobial, antioxidant, and anti-inflammatory effects. Specialised bioinformatic tools were employed to assess the potential of identified macroalgae as a source of antimicrobial peptides (AMPs). For selected macroalgal species, in silico screening of publicly available databases was performed to identify previously reported and characterised AMPs associated with these species. This in silico approach presents a promising strategy for discovering novel antimicrobial agents with potential activity, especially against drug-resistant bacteria. Finally, applying proteomics methodologies for in silico evaluation of the selected algal species advances modern technologies for the sustainable use of natural resources. Full article

Understanding the molecular basis of heat tolerance in microalgae is crucial for developing resilient strains for industrial biotechnology. This study identified two desert Chlorella strains, XDA024 (thermotolerant) and XDA121 (heat-sensitive), through short-term thermal screening. The thermotolerant strain XDA024 survived exposure to 50 °C for 3 h, whereas XDA121 succumbed within 1 h at 40 °C. Physiological analyses revealed that the superior heat resistance of XDA024 was associated with enhanced activities of key antioxidant enzymes, including superoxide dismutase, catalase, and peroxidase, which effectively mitigated oxidative damage, alongside an elevated proline content contributing to osmoregulation. Transcriptomic profiling under acute heat stress (45 °C, 3 h) revealed that the unique thermotolerance of XDA024 was underpinned by the upregulation of genes related to photosystem stability and lipid synthesis, processes supported by activated calcium signaling and antioxidant pathways. In contrast, XDA121 exhibited significant downregulation of photosynthesis-related genes and promoted lipid degradation, resulting in membrane instability. Exogenous application of phosphatidylethanolamine (PE) and monoethanolamine (MEA) markedly increased the survival rate of XDA121 by more than threefold, primarily by alleviating membrane damage through enhanced membrane integrity and modulated antioxidant enzyme activities. These findings indicate that thermotolerance in desert Chlorella (Chlorophyta) is governed by the integrated coordination of antioxidant defense mechanisms, lipid metabolism, and photosystem protection. This research provides crucial insights and practical strategies for engineering heat-resistant microalgal strains for sustainable biofuel and bioproduct production. Full article

N-Acetylneuraminic acid (Neu5Ac), the predominant form of sialic acids (Sias), is extensively utilized in the food, pharmaceutical, and cosmetic industries. Microbial fermentation serves as a critical production method for its economical, eco-friendly, and scalable production. Escherichia coli and Bacillus subtilis, as primary industrial workhorses for Neu5Ac production, have been extensively investigated owing to their well-characterized genetic frameworks and mature molecular toolkits. Nevertheless, the intricate regulatory networks inherent to microbial systems present formidable obstacles to the high-efficiency biosynthesis of Neu5Ac. This review delineates the genetic and molecular mechanisms underlying Neu5Ac biosynthesis in both E. coli and B. subtilis. Furthermore, the rational and irrational strategies for constructing Neu5Ac microbial cell factories are systematically summarized, including the application of rational metabolic engineering to relieve feedback regulation, reconfigure metabolic networks, implement dynamic regulation, and optimize carbon sources; as well as the use of irrational strategies including directed evolution of key enzymes and high-throughput screening based on biosensors. Finally, this review addresses current challenges in Neu5Ac bioproduction and proposes integrative solutions combining machine learning with systems metabolic engineering to advance the construction of high-titer Neu5Ac microbial cell factory and the refinement of advanced fermentation technologies. Full article

Cyanobacteria are a prolific source of bioactive metabolites with expanding applications in sustainable agriculture and biotechnology. This work explores, for the first time in thermotolerant Colombian isolates, the impact of light spectrum, photoperiod, and irradiance on the co-production of exopolysaccharides (EPS) and indole-3-acetic acid (IAA). Six strains from hot-spring environments were screened under varying blue:red (B:R) LED ratios and full-spectrum illumination. Hapalosiphon sp. UFPS_002 outperformed all others, reaching ~290 mg L⁻¹ EPS and 28 µg mL⁻¹ IAA in the initial screen. Response-surface methodology was then used to optimize light intensity and photoperiod. EPS peaked at 281.4 mg L⁻¹ under a B:R ratio of 1:5 LED, 85 µmol m⁻² s⁻¹, and a 14.5 h light cycle, whereas IAA was maximized at 34.4 µg mL⁻¹ under cool-white LEDs at a similar irradiance. The quadratic models exhibited excellent predictive power (R² > 0.98) and a non-significant lack of fit, confirming the light regime as the dominant driver of metabolite yield. These results demonstrate that precise photonic tuning can selectively steer carbon flux toward either EPS or IAA, providing an energy-efficient strategy to upscale thermotolerant cyanobacteria for climate-resilient biofertilizers, bioplastics precursors, and other high-value bioproducts. Full article

This study explores the valorization of agro-industrial by-products—riceberry broken rice (RBR) and soybean meal (SBM)—as cost-effective substrates for enhancing exopolysaccharide (EPS) production by Bacillus tequilensis PS21. Eight Bacillus strains were screened, and B. tequilensis PS21 demonstrated the highest EPS yield (2.54 g/100 mL DW). The EPS displayed a strong antioxidant capacity with 65.5% DPPH and 80.5% hydroxyl radical scavenging, and a FRAP value of 6.51 mg Fe²⁺/g DW. Antimicrobial testing showed inhibition zones up to 10.07 mm against Streptococcus agalactiae and 7.83 mm against Staphylococcus aureus. Optimization using central composite design (CCD) and the response surface methodology (RSM) revealed the best production at 5% (w/v) RBR, 3% (w/v) SBM, pH 6.66, and 39.51 °C, yielding 39.82 g/L EPS. This EPS is a moderate-molecular-weight (11,282 Da) homopolysaccharide with glucose monomers. X-ray diffraction (XRD) showed an amorphous pattern, favorable for solubility in biological applications. Thermogravimetric analysis (TGA) demonstrated thermal stability up to ~250 °C, supporting its suitability for high-temperature processing. EPS also exhibited anticancer activity with IC₅₀ values of 226.60 µg/mL (MCF-7) and 224.30 µg/mL (HeLa) at 72 h, reduced colony formation, inhibited cell migration, and demonstrated anti-tyrosinase, anti-collagenase, and anti-elastase effects. This study demonstrates the successful valorization of agro-industrial by-products—RBR and SBM—for the high-yield production of multifunctional EPS with potent antioxidant, antimicrobial, and anticancer properties. The findings highlight the sustainable potential of these low-cost substrates in supporting the development of green and value-added bioproducts, with promising utilizations across the food, pharmaceutical, and cosmetic sectors. Full article

In the realm of sustainable and eco-friendly agriculture, current scientific research emphasizes the development of plant-based bioproducts to mitigate the agricultural footprint resulting from excessive fertilizer and pesticide use. This study investigates the cladodes of Opuntia ficus-indica to screen for bioactive compounds and assess their efficacy against fungal pathogens isolated from infected tomato fruits. Quantitative analysis of the methanolic extract revealed substantial concentrations of bioactive compounds: total polyphenols (86.6 mg GAEs/100 g FW), flavonoids (13.4 mg QEs/100 g FW), condensed tannins (8.9 mg TAEs/100 g FW), and carotenoids (0.9 mg β-CEs/100 g FW). Notably, the DPPH assay indicated that the cladode extract exhibited significant antioxidant potential at a concentration of 0.6 mg/mL. Seven fungal pathogens were isolated from infected tomato fruits and identified as belonging to the following genera: Rhizoctonia (EC2), Fusarium (EC1 and EC3), Alternaria (EC4), Mucor (EC5), Aspergillus (EC6), and Penicillium (EC7). At a concentration of 0.02% of the cladode hydroethanolic extract, the antifungal activity results demonstrated mycelial growth inhibition for Alternaria sp. (70.91%), Rhizoctonia solani EC2 (58.49%), Fusarium oxysporum EC3 (57.63%), and Fusarium solani EC1 (53.13%). Conversely, lower inhibitory activities were observed for Mucor sp. EC5 (31.08%), Aspergillus sp. EC6 (35.14%), and Penicillium sp. EC7 (28.38%). At a concentration of 0.04%, all cladode hydroethanolic extracts inhibited mycelial growth by more than 50%. Furthermore, the highest spore inhibition was attained with the 0.04% cladode hydroethanolic extract (exceeding 50%). Inhibition percentages of 83.02%, 85.96%, 87.76%, and 90.20% were recorded for Fusarium oxysporum EC3, Fusarium solani EC1, Rhizoctonia solani EC2, and Alternaria sp. EC4, respectively. Collectively, these findings suggest that Opuntia ficus-indica extract holds significant promise for application as a biopesticide against fungal pathogens affecting tomato fruits. Full article

Methanotrophs hold significant potential in global methane mitigation and resource recovery. However, the limited rate of cell proliferation remains a significant constraint for large-scale applications. Therefore, screening efficient methanotrophic strains that are suitable for industrial applications to mitigate methane and exploring potential methane resource utilization pathways are of great importance for sustainable development. Gradient dilution and the streak plate method were employed to isolate methanotrophic strains from a previously domesticated methane-oxidizing microbial consortium. We isolated a highly efficient strain, M6, which exhibited a 230% increase in growth rate compared to the laboratory model strain Methylocystis bryophila (M. bryophila). Taxonomic analysis revealed that strain M6 is classified as Methylocystis parvus. Genomic data indicated a diverse range of metabolic functions. In addition to utilizing methane, strain M6 can also utilize citrate to generate energy and intermediate products, addressing issues related to insufficient methane supply or low methane mass transfer efficiency. Metabolic adaptability ensures the stability of its application. The optimal cultivation conditions for strain M6 were determined, characterized by mild and easily implementable parameters. Based on the analysis of the genome and metabolic pathways, strain M6 exhibits potential for the synthesis of bioproducts, such as proteins, lipids, and polyhydroxyalkanoates (PHAs), with the fermentation process not requiring cost-intensive carbon sources, making it both economical and sustainable. Full article

Transcription factor-based biosensors (TFBs) are powerful tools in microbial biosensor applications, enabling dynamic control of metabolic pathways, real-time monitoring of intracellular metabolites, and high-throughput screening (HTS) for strain engineering. These systems use transcription factors (TFs) to convert metabolite concentrations into quantifiable outputs, enabling precise regulation of metabolic fluxes and biosynthetic efficiency in microbial cell factories. Recent advancements in TFB, including improved sensitivity, specificity, and dynamic range, have broadened their applications in synthetic biology and industrial biotechnology. Computational tools such as Cello have further revolutionized TFB design, enabling in silico optimization and construction of complex genetic circuits for integrating multiple signals and achieving precise gene regulation. This review explores innovations in TFB systems for microbial biosensors, their role in metabolic engineering and adaptive evolution, and their future integration with artificial intelligence and advanced screening technologies to overcome critical challenges in synthetic biology and industrial bioproduction. Full article

The rapid growth of the human population has significantly increased the demand for food, leading to the intensification of agricultural practices that negatively impact the environment. Climate change poses a significant threat to global food production, as it can disrupt crop yields and modify the lifecycle stages of phytopathogens and pests. To address these challenges, the use of microbial inoculants, which are bioproducts containing beneficial microorganisms known as plant growth promotion microorganisms (PGPMs), has emerged as an innovative approach in sustainable agriculture. This review covers the isolation and identification of beneficial strains, the screening and selection process, the optimization of production techniques, and the importance of quality control and field testing. It also discusses the key points for the development and formulation of high-quality microbial inoculants, as well as highlights their advancements, current challenges, and future directions for research and application. Full article

The management of the organic fraction of municipal solid waste (OFMSW), also called urban biowaste, and urban wastewater sludge (UWWS) represents a challenge for cities and regions, which want to adopt innovative urban bioeconomy approaches for their treatment and production of high-added-value products beyond the traditional anaerobic digestion (AD) and compost. This adoption is often restricted by the availability and maturity of technologies. The research object of this manuscript, based on the findings of EU Horizon 2020 project HOOP, is the identification of state-of-the-art circular technologies for material valorisation of OFMSW and UWWS, following a novel screening methodology based on the scale of implementation (tested at least at pilot scale). The screening resulted in 25 technologies, which have been compared and discussed under a multidisciplinary assessment approach, showing their enabling factors and challenges, their current or potential commercial status and their compatibility with the traditional technologies for urban biowaste treatment (composting and AD). The bioproducts cover market sectors such as agriculture, chemistry, nutrition, bioplastics, materials or cosmetics. Therefore, the results of this review help project promoters at city/region level to select innovative technologies for the conversion of OFMWS and UWWS into high value products. Full article

Melanin is a high value bioproduct generated through the fermentation of Aureobasidium pullulans, playing a crucial role in various fields, including food, medicine, environmental protection, and materials science. However, its high production costs and low synthetic yields significantly limit its applications. Therefore, it is essential to identify high-yield strains, reduce production costs, and optimize fermentation strategies. In this study, a high melanin-yielding Aureobasidium pullulans 53LC7 was screened and identified, and the fermentation process was optimized based on melanin yield, color value, and pullulan yield. The results indicated that the melanin yield peaked at an initial pH of 6.0, temperature of 27 °C, fermentation time of 6.5 d, and inoculation quantity of 2.5%, achieving a melanin yield of 16.33 g/L. Subsequently, huangjiu lees, a byproduct of huangjiu production, was incorporated into the fermentation medium, resulting in a melanin yield of 5.91 g/L. This suggests that the Aureobasidium pullulans was not effectively utilizing huangjiu lees. To address this, we employed an adaptive evolution strategy, which increased the melanin yield to 8.72 g/L. The enhanced production was correlated with the expression of key genes, including FKS, PKS, and Cmr1. Finally, cellulase was utilized to convert the crude fibers in huangjiu lees, which were difficult to utilize, into usable substrates, while pullulanase was employed to minimize byproduct formation in the fermentation system, resulting in a melanin yield of 19.07 g/L. This study not only provides promising strains for further research but also offers valuable insights for resource production technologies. Full article

Living in diverse environmentally harsh conditions, the plant exhibits a unique survival mechanism. As a result, the endophytes residing within the plant produce specific compounds that promote the plant’s growth and defend it against pathogens. Plants and algae symbiotically harbor endophytes, i.e., microbes and microorganisms living within them. The objective of this study is to isolate endophytic fungi, specifically strains of Aspergillus terreus, from the leaves of the salt-tolerant plant Tetraena qatarensis and to explore the salt tolerance, antagonistic activity, and growth promotion properties. Strain C A. terreus (ON117337.1) was screened for salt tolerance and antagonistic effects. Regarding salt tolerance, the isolate demonstrated the ability to thrive in a concentration of up to 10% NaCl. A. terreus showed inhibitory activity against four fungal phytopathogens, namely Fusarium oxysporum, Alternaria alternata, Colletotrichum gloeosporioides, and Botrytis cinerea. The GC-MS investigation of the fungal (strain C Aspergillus terreus) extract showed the presence of about 66 compounds (secondary metabolites). Secondary metabolites (SMs) are produced, like Hexadecanoic acid, which aids in controlling phytopathogens. Also produced is lovastatin, which is used to treat hypercholesterolemia. Strain C, which showed salinity tolerance and the highest inhibitory activity, was further analyzed for its effect on tomato seed germination under pathogen stress from Fusarium oxysporum. The greenhouse experiment indicated that the fungi increased the length of tomato seedlings and the plant biomass. Therefore, the selected endophytes derived from Tetraena qatarensis were scrutinized for their potential as biocontrol agents, aiming to thwart fungal pathogens and stimulate plant growth. The in vitro and in vivo assessments of strain C (Aspergillus terreus) against Fusarium oxysporum in this investigation indicate the promising role of endophytes as effective biological control agents. Investigating novel bio-products offers a sustainable approach to agriculture, gradually reducing dependence on chemical fungicides. Full article

Carotenoids are valuable pigments naturally occurring in all photosynthetic plants and microalgae as well as in selected fungi, bacteria, and archaea. Green microalgae developed a complex carotenoid profile suitable for efficient light harvesting and light protection and harbor great capacity for carotenoid production through the substantial power of the endogenous 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Previous works established successful genome editing and induced significant changes in the cellular carotenoid content in Chlamydomonas reinhardtii. This study employs a tailored carotenoid pathway for engineered bioproduction of the valuable ketocarotenoid astaxanthin. Functional knockout of lycopene ε-cyclase (LCYE) and non-homologous end joining (NHEJ)-based integration of donor DNA at the target site inhibit the accumulation of α-carotene and consequently lutein and loroxanthin, abundant carotenoids in C. reinhardtii without changes in cellular fitness. PCR-based screening indicated that 4 of 96 regenerated candidate lines carried (partial) integrations of donor DNA and increased ß-carotene as well as derived carotenoid contents. Iterative overexpression of CrBKT, PacrtB, and CrCHYB resulted in a 2.3-fold increase in astaxanthin accumulation in mutant ΔLCYE#3 (1.8 mg/L) compared to the parental strain UVM4, which demonstrates the potential of genome editing for the design of a green cell factory for astaxanthin bioproduction. Full article