Search Results (843)

Methyl methacrylate (MMA)-based materials are widely used in temporary and permanent prosthetic dentistry; the prolonged presence of these materials in the oral cavity and potential residual monomer release can affect local biological responses. This study aimed to evaluate the biocompatibility and toxicity profiles of MMA, the monomeric unit of polymethyl methacrylate (PMMA), a key component of dental materials used in temporary prosthetic restorations. Molecular docking simulations were performed using CB-Dock2 and Autodock vina, while protein–protein interaction (PPI) analysis was performed using STRING and Cytoscape. In addition, Swiss ADME Target Prediction, toxicity prediction, and enrichment analyses were used to characterize the biological significance of selected targets in more detail. Molecular docking studies revealed promising interactions of MMA with valuable biomolecular targets relevant to biocompatibility. The toxicity profile revealed aspects of MMA that could be improved. Pharmacophore modeling, highlighting the importance of carbonyl and hydroxyl groups as pharmacophoric properties, revealed compounds with suitable biocompatibility profiles. Consequently, it emphasizes the interactions of MMA with biomolecules and safety considerations. It can guide the design and optimization of biocompatible materials as an exploratory avenue for future developments in dental biomaterials. Full article

Cancer cells, like yeast, use fermentation despite the presence of oxygen, a phenomenon called aerobic glycolysis. The advantage is that it maintains many C-C bonds of glucose, allowing highly proliferating cells to produce the biomolecules that are necessary for cytokinesis. However, aerobic glycolysis is less energy-efficient than respiration, and it must operate at high frequency and produces large amounts of lactate, which modifies and stimulates DNA repair enzymes via lysine lactylation. This makes cancer cells resistant to radiotherapy, which requires a combination with chemotherapy using drugs that inhibit DNA repair. However, this converts healthy cells to cancer cells, indicating that research is still required regarding the relationship between glycolysis and cancer. Using yeast as a model, we discovered that the glycolytic enzymes TPI and GAPDH (Tpi1p and Tdh1-3p in yeast) interact with the DNA damage-dependent Checkpoint Rad9p (53BP1/BRCA1/MDC1 in humans). We propose that Tpi1p and Tdh1-3p override Rad9p, allowing cells with damaged DNA to proliferate. We isolated tpi and gapdh mutant strains that are deficient in DNA repair. While the tpi mutant strain has lower enzymatic activity, the gapdh mutant strains have normal enzymatic activity, confirming previous reports that GAPDH moonlights in the DNA damage response. Full article

Phytochemical-assisted green synthesis of silver nanoparticles offers a sustainable alternative to conventional fabrication routes by utilising plant-derived metabolites as multifunctional reducing, capping, and stabilising agents. Polyphenols, flavonoids, tannins, alkaloids, and related biomolecules mediate the reduction of Ag⁺ to Ag⁰ under mild conditions while controlling nucleation, growth, and surface stabilisation, thereby dictating nanoparticle size, morphology, and colloidal stability. This review establishes clear links between phytochemical composition and the mechanistic pathways governing nanoparticle formation and biofunctional performance. Variations in extract chemistry influence electron transfer dynamics, surface functionalisation, and physicochemical properties, ultimately modulating biological activity. Enhanced antimicrobial and antioxidant effects arise from synergistic interactions between the silver core and phytochemical capping layers, promoting membrane disruption, reactive oxygen species generation, and biomolecular interference. Despite promising applications in antimicrobial coatings, food preservation, agriculture, and anticancer systems, key challenges remain, including compositional variability, limited mechanistic standardisation, and insufficient toxicological evaluation. Nonetheless, phytochemical-assisted synthesis provides a tunable and sustainable platform for AgNP production, aligning nanomaterial design with green chemistry principles while enabling multifunctional bioactivity. By integrating phytochemical composition, mechanistic synthesis pathways, and structure–activity relationships across diverse applications, this review provides a critical framework for the rational design, standardisation, and scalable development of next-generation phytochemical-mediated AgNP systems. Full article

This study reports the green synthesis of silver nanoparticles (AgNPs) using Salvia tomentosa L. leaf extract, and evaluates their physicochemical characteristics and biointerfacial performance, including DNA interaction, antibacterial activity, and antioxidant capacity. AgNP formation was confirmed by UV-Vis spectroscopy through a surface plasmon resonance band at 472 nm. SEM imaging showed predominantly spherical particles with sizes of 30–80 nm and a zeta potential of −17.3 mV, and EDX verified the elemental presence of silver. FTIR spectra indicated that plant-derived biomolecules, particularly phenolics, contributed to the reduction and capping/stabilization of AgNPs. XRD analysis confirmed a crystalline face-centered cubic structure. The AgNPs exhibited moderate, spontaneous binding to DNA (Kb ≈ 1.07 × 10⁴ M⁻¹), characterized by pronounced hyperchromism without evidence of intercalation. Competitive fluorescence assays supported a predominantly non-intercalative, surface-associated interaction with minor groove perturbation, while agarose gel electrophoresis indicated preserved plasmid integrity and no extensive strand cleavage. Collectively, these results suggest reversible and structurally non-destructive AgNP–DNA complexation, indicating their potential for nucleic acid-related nano-biointerface studies, while further investigations are required to evaluate their suitability for biomedical applications. The biosynthesized AgNPs showed enhanced antibacterial activity against Gram-positive (Bacillus cereus) and Gram-negative (Pantoea agglomerans) bacteria compared with the leaf extract, whereas AgNO₃ produced the strongest immediate effect, consistent with rapid Ag⁺ release. Antioxidant activity assessed by DPPH and ABTS assays showed strong radical-scavenging activity for the extract, in line with its high total phenolic content (206.2 mg GAE/g). Although AgNPs displayed lower phenolic content (164.2 mg GAE/g) and reduced antioxidant activity than the extract, they retained moderate scavenging capacity, indicating effective surface functionalization by phytochemicals. Overall, S. tomentosa leaf extract-capped AgNPs combine defined physicochemical features with non-destructive DNA association and antibacterial efficacy, underscoring their promise as phytochemical-functionalized nano-biointerfaces for antimicrobial and related biointerface applications. Full article

Adeno-associated viruses (AAVs) have emerged as promising vectors for gene therapy due to their non-pathogenic nature and ability to transduce various cell types efficiently. In recent years, there has been an increasing effort to optimize the production and purification of AAV to support clinical applications; however, challenges exist in affinity ligand design, synthesis, and characterization. Understanding the binding interactions of these viruses with functional molecules is pivotal for the development of affinity-based separation methods of AAVs. Classical methods to measure thermodynamic parameters such as Isothermal Titration Calorimetry (ITC) are challenging to employ in these scenarios, as the concentrations of the viral titers are significantly lower than those used in binding experiments with small biomolecules. Here, we present design principles that enable ITC-based determination of binding interactions between AAV2 and heparin. We observe increasing binding affinity with increasing molecular weight of heparin. We also elucidate the binding stoichiometry between AAV2 and heparins of varying molecular weights. Additionally, we report on the impact of buffer conditions and pH values on AAV2–heparin binding properties. Lastly, we also present the binding affinities and thermodynamic properties of interactions between the two species with heparin immobilized onto surfaces, namely, silica nanoparticles, as surface immobilization of the ligand is a common pathway for affinity-based separations. Overall, our results may provide key information for optimization of AAV-ligand binding protocols that are an essential step toward optimizing AAV capture and immobilization methods. Full article

Chitosan-based interpenetrating networks (IPNs) have become highly attractive as advanced super-adsorbent materials due to their ability to combine a high density of functional adsorption sites with enhanced structural stability under physiological conditions. While chitosan offers intrinsic advantages such as biocompatibility, biodegradability, and chemical functionality, its adsorption efficiency, mechanical strength, and long-term stability may offer limited performance in complex biomedical environments. The formation of interpenetrating networks provides an effective strategy to overcome these limitations by interlacing chitosan with other polymer networks, resulting in a synergistic enhancement of physicochemical and adsorption properties. The formation of chitosan-based IPNs offers tunable control of network structure, porosity, swelling behaviour, and adsorption kinetics, which in turn results in enhanced retention and controlled interaction of drugs, biomolecules, toxins, and other therapeutic agents. Variations in polymer composition, crosslinking density, and network interactions further facilitate the controlled tailoring of adsorption properties for targeted biomedical applications. This review presents a comprehensive and critical assessment of recent progress in the fabrication, functionalization, and structure–property relationships of chitosan-based IPNs, with a main emphasis on their super-adsorbent behaviour. Furthermore, this review highlights key biomedical applications of IPNs, including controlled drug delivery, wound healing systems, tissue engineering scaffolds, detoxification platforms, and biosensing devices. Current issues in scalability, stability, and clinical translation are discussed, as well as future perspectives that highlight the potential of chitosan-based IPNs as high-performance, sustainable super-adsorbent materials for advanced biomedical technologies. Full article

Silver nanoparticles (AgNPs) have attracted substantial scientific interest in biomedical research owing to their unique physicochemical characteristics, broad-spectrum antimicrobial activity, plasmonic properties, and therapeutic versatility. Although conventional physicochemical synthesis methods enable controlled NPs fabrication, their dependence on hazardous reagents, elevated energy input, and environmentally detrimental processing conditions has stimulated the development of sustainable biogenic alternatives. Biological synthesis utilizing plants, microorganisms, fungi, algae, and purified biomolecules has emerged as an eco-friendly and bio-compatible strategy for AgNP fabrication, enabling simultaneous reduction, stabilization, and intrinsic biofunctionalization of NPs. However, traditional biogenic synthesis remains constrained by limited mechanistic understanding, poor batch reproducibility, inadequate control over physicochemical properties, and challenges in large-scale manufacturing. Recent advances in bioengineering have transformed this field through the integration of metabolic engineering, synthetic biology, microfluidic-assisted synthesis, artificial intelligence-guided process optimization, and continuous-flow biomanufacturing, collectively enabling precision fabrication of biogenic AgNPs with enhanced uniformity, scalability, and functional tunability. Furthermore, strategic surface engineering and functionalization have expanded the applicability of biogenic AgNPs across targeted anticancer therapy, antimicrobial intervention, wound healing, regenerative medicine, drug delivery, and theranostic imaging. Despite these advancements, critical challenges remain regarding nano–bio interactions, toxicological safety, regulatory compliance, and translational scalability. Unlike conventional reviews focused primarily on green synthesis approaches, this review critically highlights emerging bioengineering paradigms that enable programmable, scalable, and precision-controlled biogenic AgNP fabrication. This review comprehensively examines next-generation paradigms and strategies for AgNPs biosynthesis, elucidates the molecular mechanisms governing their formation, highlights emerging functionalization and biomedical application paradigms, and discusses current translational barriers. Forming biogenic composites of AgNPs and heteroatom doped carbon nanodots needs intense research in near future. Full article

The distinct electronic and optical properties of gold nanoparticles (NPs) have made them innovative assets for biomolecular sensing. This review outlines the various gold nanoparticle-based biosensing techniques centred on biomolecule detection and signal relay. We discussed the physical, chemical (Turkevich, Brust, seed-mediated growth, and digestive ripening) and biological syntheses involving bacteria, fungi, and plant extracts. Also discussed were the various ways these techniques affect the shape and functionality of the nanoparticles. Detection techniques are typically classified as the following: colourimetric, fluorescence-based, electrochemical, and surface plasmon resonance (SPR). Colourimetric assays enable visual detection of proteins and oligonucleotides by monitoring gold NP aggregation, while molecular beacons enable precise fluorescent-based detection. Quantitative detection of small molecules and gold NPs can be performed using electrochemical sensing, and biomolecular interactions can be analysed in real time using SPR. With the review focusing on the integration of gold NPs with microfluidics and wearable sensors, this synthesis aims to support the design of more practical, real-world applications of the described techniques. Full article

Boron (B) is increasingly recognized as more than a trace dietary element, emerging as a context-dependent organizer of molecular interactions at the host–microbiome interface. B exhibits reversible covalent chemistry driven by Lewis’ acidity and selective affinity for cis-diol-rich biomolecules, enabling dynamic complexation with polyols, glycans, and phenolic ligands that dominate the intestinal mucus environment and shape microbial ecology. We synthesize evidence supporting an architecture-based framework in which B modulates biological function by conditioning the physicochemical context of microbial communication rather than acting as a single-pathway effector. Central to this model is spatial bioavailability, distinguishing plasma-accessible boron from microbiota-accessible boron (MAB), species that persist in the lumen and mucus layer long enough to influence interface-level processes. We propose that insufficient or altered MAB availability may contribute to dysbiosis (DYS) by destabilizing quorum-associated coordination, signal persistence, and mucosal microstructure, thereby promoting barrier dysfunction and inflammaging. Particular attention is given to B-mediated symbiotaxis, a hypothesis-driven concept describing how B-containing molecular assemblies may bias microbial communities toward cooperative, barrier-supportive configurations and reduce ecological volatility. We identify key knowledge gaps and experimental priorities (speciation-aware measurements, signal-centric readouts) necessary to determine when, where, and how B-mediated molecular architecture may counteract DYS and support healthspan. Full article

Biosensors have emerged as a rapidly evolving area of research, offering transformative potential across biomedical diagnostics, environmental monitoring, and pharmaceutical applications. Among the diverse range of biosensing technologies, graphene-based surface plasmonic resonance (SPR) biosensors have attracted particular interest due to their exceptional sensitivity, scalability for mass production, and cost-effective fabrication processes. This study explores the operational principles and current design methodologies of graphene-based SPR biosensors, with a special emphasis on the role of electrolyte gating and its impact on sensor performance. Furthermore, the influence of graphene’s quantum capacitance is investigated as a critical parameter for improving the accuracy and reliability of performance predictions in the proposed sensor configuration. Computational analysis of sensitivity and key performance metrics was conducted. Notably, key performance metrics of the sensor improved upon incorporating quantum capacitance effects into the simulation framework. At a β₂-microglobulin concentration of 0.00118 g/L, the sensitivity increased to 174 GHz·g/L, the figure of merit reached 0.55 L/g, the quality factor was 0.01, the signal-to-noise ratio (SNR) rose to 0.008, and the detection accuracy (DA) reached 0.08 L/THz, demonstrating the significant impact of quantum capacitance on the sensor’s performance. These findings highlight the potential of quantum-electrostatic considerations to enhance the precision and efficacy of graphene-based SPR biosensors, paving the way for the development of next-generation biosensing platforms with improved analytical capabilities. Unlike conventional graphene SPR biosensors, which primarily detect refractive index changes near the graphene surface, our model explicitly considers the electrostatic effect of biomolecules on graphene’s Fermi energy. By modelling β2-microglobulin as a charged species, we compute the resulting electric double layer and incorporate quantum capacitance in series. This amplifies the charge-induced modulation of graphene’s optical conductivity, and, combined with a graphene perfect absorber design, leads to enhanced plasmonic resonance shifts. Consequently, our approach achieves higher sensitivity and more precise detection of biomolecular interactions compared to traditional simulations. Full article

In response to the plastic pollution crisis, bioplastics emerged as a sustainable alternative. However, low degradation rate and abiotic decomposition generate micro- and nanoplastics. These particles enter the food chain, establishing oral intake as a key route of human exposure. This review gathered studies on the biotransformation of bioplastics in the gastrointestinal tract and on their toxicity in human cells and murine models. Most studies focused on polylactic acid particles due to widespread use in food packaging. Under simulated gastrointestinal conditions in vitro, particles were modulated, resulting in cavity and pore formation, fragmentation, lipase competition, protein corona formation, and alterations in the gut microbiota (including Selenomonadaceae, Bifidobacterium, and Prevotellaceae). Also, particle breakdown increases surface area, enhancing interactions with biomolecules and causing higher in vitro and in vivo toxicity. Indeed, pro-inflammatory cytokine secretion, oxidative stress induction, and redox imbalance were found in both models. In mice, alterations in gut microbiota involving Bacillales indirectly mediated hepatotoxicity, leading to uric acid and triglyceride accumulation. Furthermore, microbiota adaptation over time was suggested with an increase in microorganisms and the potential conversion of L-lactic into harmful D-lactic acid. Despite limited studies, this review highlighted that ingested bioplastic-derived micro- and nanoplastics can lead to toxic effects. Full article

Background: D-amino acids are increasingly recognized as bioactive molecules with diverse physiological and pathological roles in humans, particularly in the gut, kidneys, and nervous system. Advances in analytical techniques have revealed their widespread presence in biological fluids, including plasma, urine, cerebrospinal fluid, amniotic fluid, and saliva, challenging the long-standing assumption that D-amino acids are absent or biologically insignificant in mammals. Scope: This review systematically summarizes the current knowledge on D-amino acid sources, distribution, metabolic regulation, and biological functions, with emphasis on their roles in human physiology and disease. Key findings: Accumulating evidence indicates that major D-amino acids, including D-serine, D-aspartate, and D-alanine, are derived from multiple sources such as diet, intestinal microbiota, and endogenous racemization processes. Rather than being passive metabolic byproducts, D-amino acids are now understood to participate in host–microbe interactions, neurotransmission, and renal physiology. Importantly, a consistent trend across studies is their dual and concentration-dependent nature, exhibiting beneficial effects under physiological conditions but potential cytotoxic effects at elevated levels. Conclusions and perspectives: Overall, D-amino acids represent multifunctional biomolecules with tightly regulated physiological roles and context-dependent pathological implications. However, major gaps remain in understanding their quantitative dynamics, tissue-specific regulation, and microbiota-dependent metabolism. Future studies addressing these mechanisms will be essential for establishing their clinical utility as biomarkers and for developing D-amino acid-based therapeutic and nutritional strategies. Full article

This study uses a bismuth ferrite (BiFeO₃) and MXene (Ti₃C₂Tx) to design a surface plasmon resonance (SPR) biosensor for the sensitivity enhancement at a 633 nm wavelength. Here, MXene serves as a biorecognition element (BRE) layer to ensure stable and reliable biomolecule adsorption. The MXene is a family of two-dimensional (2D) materials with metallic-like conductivity, a large surface area that can attach biomolecules, and improve biocompatibility. The addition of a conductive 2D MXene layer and a high-index BiFeO₃ dielectric layer greatly improves light–matter interaction and evanescent field penetration at the sensing interface. Strong plasmonic coupling is indicated by the reflectance analysis, which shows a distinct and consistent shift in the resonance angle as analyte RI increases. This study examined the sensitivity at optimized Ag and BiFeO₃ layer thickness. At an Ag of 39 nm and BiFeO₃ of 3 nm thickness, the maximal sensitivity of 340.68°/RIU with a remarkable figure of merit (FoM) of 47.38/RIU is obtained. The overall detection accuracy (DA) and FoM are significantly improved by the large sensitivity enhancement, despite a slight increase in full width at half maximum (FWHM). Furthermore, the penetration depth (PD) of 198.50 nm (at RI:1.330) and 199.52 nm (at RI:1.335) is attained with the proposed structure. Due to its high sensitivity, reusability, and reproducibility, the SPR biosensor has the potential to be used in biochemical, environmental, and medical detection. Full article

Nanophotonics, an interdisciplinary field merging nanotechnology and photonics, has enabled transformative advancements across diverse sectors, including green energy, biomedicine, and optical computing. This review comprehensively examines recent progress in nanophotonic principles and applications, highlighting key innovations in material design, device engineering, and system integration. In renewable energy, nanophotonics allows the use of light-trapping nanostructures and spectral control in perovskite solar cells, concentrating solar power systems, and thermophotovoltaics. This has significantly enhanced solar conversion efficiencies, approaching theoretical limits. In biosensing, nanophotonic platforms achieve unprecedented sensitivity in detecting biomolecules, pathogens, and pollutants, enabling real-time diagnostics and environmental monitoring. Medical applications leverage tailored light–matter interactions for precision photothermal therapy, image-guided surgery, and early disease detection. Furthermore, nanophotonics underpins next-generation optical neural networks and neuromorphic computing, offering ultrafast, energy-efficient alternatives to von Neumann architectures. Despite rapid growth, challenges in scalability, fabrication costs, and material stability persist. Future advancements will rely on novel materials, AI-driven design optimization, and multidisciplinary approaches to enable scalable, low-cost deployment. This review summarizes recent progress and highlights future trends, including novel material systems, multidisciplinary approaches, and enhanced computational capabilities, paving the way for transformative applications in this rapidly evolving field. Full article