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Keywords = anatomical descriptors

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33 pages, 20646 KiB  
Review
Clinical TNM Lung Cancer Staging: A Diagnostic Algorithm with a Pictorial Review
by Ivana Kuhtić, Tinamarel Mandić Paulić, Lucija Kovačević, Sonja Badovinac, Marko Jakopović, Margareta Dobrenić and Maja Hrabak-Paar
Diagnostics 2025, 15(7), 908; https://doi.org/10.3390/diagnostics15070908 - 1 Apr 2025
Cited by 1 | Viewed by 2253
Abstract
Lung cancer is a prevalent malignant disease with the highest mortality rate among oncological conditions. The assessment of its clinical TNM staging primarily relies on contrast-enhanced computed tomography (CT) of the thorax and proximal abdomen, sometimes with the addition of positron emission tomography/CT [...] Read more.
Lung cancer is a prevalent malignant disease with the highest mortality rate among oncological conditions. The assessment of its clinical TNM staging primarily relies on contrast-enhanced computed tomography (CT) of the thorax and proximal abdomen, sometimes with the addition of positron emission tomography/CT scans, mainly for better evaluation of mediastinal lymph node involvement and detection of distant metastases. The purpose of TNM staging is to establish a universal nomenclature for the anatomical extent of lung cancer, facilitating interdisciplinary communication for treatment decisions and research advancements. Recent studies utilizing a large international database and multidisciplinary insights indicate a need to update the TNM classification to enhance the anatomical categorization of lung cancer, ultimately optimizing treatment strategies. The eighth edition of the TNM classification, issued by the International Association for the Study of Lung Cancer (IASLC), transitioned to the ninth edition on 1 January 2025. Key changes include a more detailed classification of the N and M descriptor categories, whereas the T descriptor remains unchanged. Notably, the N2 category will be split into N2a and N2b based on the single-station or multi-station involvement of ipsilateral mediastinal and/or subcarinal lymph nodes, respectively. The M1c category will differentiate between single (M1c1) and multiple (M1c2) organ system involvement for extrathoracic metastases. This review article emphasizes the role of radiologists in implementing the updated TNM classification through CT imaging for correct clinical lung cancer staging and optimal patient management. Full article
(This article belongs to the Special Issue Advances in Lung Cancer Diagnosis)
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18 pages, 3315 KiB  
Article
Predicting Aneurysmal Degeneration in Uncomplicated Residual Type B Aortic Dissection
by Arianna Forneris, Ali Fatehi Hassanabad, Jehangir J. Appoo and Elena S. Di Martino
Bioengineering 2024, 11(7), 690; https://doi.org/10.3390/bioengineering11070690 - 8 Jul 2024
Cited by 2 | Viewed by 1611
Abstract
The formation of an aneurysm in the false lumen (FL) is a long-term complication in a significant percentage of type B aortic dissection (AD) patients. The ability to predict which patients are likely to progress to aneurysm formation is key to justifying the [...] Read more.
The formation of an aneurysm in the false lumen (FL) is a long-term complication in a significant percentage of type B aortic dissection (AD) patients. The ability to predict which patients are likely to progress to aneurysm formation is key to justifying the risks of interventional therapy. The investigation of patient-specific hemodynamics has the potential to enable a patient-tailored approach to improve prognosis by guiding disease management for type B dissection. CFD-derived hemodynamic descriptors and geometric features were used to retrospectively assess individual aortas for a population of residual type B AD patients and analyze correlations with known outcomes (i.e., rapid aortic growth, death). The results highlight great variability in flow patterns and hemodynamic descriptors. A rapid aortic expansion was found to be associated with a larger FL. Time-averaged wall shear stress at the tear region emerged as a possible indicator of the dynamics of flow exchange between lumens and its effect on the evolution of individual aortas. High FL flow rate and tortuosity were associated with adverse outcomes suggesting a role as indicators of risk. AD induces complex changes in vessel geometry and hemodynamics. The reported findings emphasize the need for a patient-tailored approach when evaluating uncomplicated type B AD patients and show the potential of CFD-derived hemodynamics to complement anatomical assessment and help disease management. Full article
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11 pages, 3149 KiB  
Article
Lymph Node Log-Odds Ratio Accurately Defines Prognosis in Resectable Non-Small Cell Lung Cancer
by Michal Benej, Thomas Klikovits, Tibor Krajc, Tomas Bohanes, Lisa Schulte, Maximilian Johannes Hochmair, Stefan Watzka, Berta Mosleh, Konrad Hoetzenecker, Clemens Aigner, Mir Alireza Hoda and Michael Rolf Mueller
Cancers 2023, 15(7), 2082; https://doi.org/10.3390/cancers15072082 - 31 Mar 2023
Cited by 3 | Viewed by 2262
Abstract
Objectives: The ratio of positive and resected lymph nodes (LN ratio) has been shown to be prognostic in non-small cell lung cancer (NSCLC). Contrary to the LN ratio, calculating the LN log-odds ratio (LN-LOR) additionally considers the total number of resected lymph nodes. [...] Read more.
Objectives: The ratio of positive and resected lymph nodes (LN ratio) has been shown to be prognostic in non-small cell lung cancer (NSCLC). Contrary to the LN ratio, calculating the LN log-odds ratio (LN-LOR) additionally considers the total number of resected lymph nodes. We aim to evaluate LN-LOR between positive and resected lymph nodes as a prognostic factor in operable NSCLC. Methods: Patients with NSCLC who underwent curative intent lobectomy treated at two high-volume centers were retrospectively studied. LN-LOR was dichotomized according to impact on OS and further combined with N descriptors and correlated with clinical variables and survival. Results: 944 patients were included. Cut-off analysis revealed that an LN-LOR of −0.34 significantly discriminated patients according to OS (p < 0.001, chi-squared test 41.26). When combined with N1 and N2 descriptors, LN-LOR low risk (median OS not reached and 83 months) and LN-LOR high-risk patients (median OS 50 and 59 months) had similar survival irrespective of the anatomical location of the positive lymph nodes. Multivariable Cox regression analysis revealed that age (HR 1.02, 95% CI 1.001–1.032), sex (male, HR 1.65, 95% CI 1.25–2.19), histological subtype (HR 2.11, 95% CI 1.35–3.29), pathological stage (HR 1.23, 95% CI 1.01–1.45) and LN-LOR risk groups (low risk, HR 0.48, 95% CI 0.32–0.72) were independent prognostic factors for OS. Conclusions: This retrospective two-center analysis shows that LN-LOR is significantly associated with OS in resectable NSCLC and might better reflect the biological behavior of the disease, regardless of anatomical lymph node locations. This finding may additionally support the value of extensive LN dissection. Full article
(This article belongs to the Section Cancer Therapy)
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20 pages, 3796 KiB  
Article
Machine Learning of Multi-Modal Tumor Imaging Reveals Trajectories of Response to Precision Treatment
by Nesrin Mansouri, Daniel Balvay, Omar Zenteno, Caterina Facchin, Thulaciga Yoganathan, Thomas Viel, Joaquin Lopez Herraiz, Bertrand Tavitian and Mailyn Pérez-Liva
Cancers 2023, 15(6), 1751; https://doi.org/10.3390/cancers15061751 - 14 Mar 2023
Cited by 3 | Viewed by 3424
Abstract
The standard assessment of response to cancer treatments is based on gross tumor characteristics, such as tumor size or glycolysis, which provide very indirect information about the effect of precision treatments on the pharmacological targets of tumors. Several advanced imaging modalities allow for [...] Read more.
The standard assessment of response to cancer treatments is based on gross tumor characteristics, such as tumor size or glycolysis, which provide very indirect information about the effect of precision treatments on the pharmacological targets of tumors. Several advanced imaging modalities allow for the visualization of targeted tumor hallmarks. Descriptors extracted from these images can help establishing new classifications of precision treatment response. We propose a machine learning (ML) framework to analyze metabolic–anatomical–vascular imaging features from positron emission tomography, ultrafast Doppler, and computed tomography in a mouse model of paraganglioma undergoing anti-angiogenic treatment with sunitinib. Imaging features from the follow-up of sunitinib-treated (n = 8, imaged once-per-week/6-weeks) and sham-treated (n = 8, imaged once-per-week/3-weeks) mice groups were dimensionally reduced and analyzed with hierarchical clustering Analysis (HCA). The classes extracted from HCA were used with 10 ML classifiers to find a generalized tumor stage prediction model, which was validated with an independent dataset of sunitinib-treated mice. HCA provided three stages of treatment response that were validated using the best-performing ML classifier. The Gaussian naive Bayes classifier showed the best performance, with a training accuracy of 98.7 and an average area under curve of 100. Our results show that metabolic–anatomical–vascular markers allow defining treatment response trajectories that reflect the efficacy of an anti-angiogenic drug on the tumor target hallmark. Full article
(This article belongs to the Collection Artificial Intelligence and Machine Learning in Cancer Research)
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14 pages, 3881 KiB  
Article
Physical and Acoustical Properties of Wavy Grain Sycamore Maple (Acer pseudoplatanus L.) Used for Musical Instruments
by Florin Dinulica, Adriana Savin and Mariana Domnica Stanciu
Forests 2023, 14(2), 197; https://doi.org/10.3390/f14020197 - 20 Jan 2023
Cited by 10 | Viewed by 3015
Abstract
The wood used in the construction of musical instruments is carefully selected, being the best quality wood from the point of view of the wood structure. However, depending on the anatomical characteristics of the wood, the resonance of wood is classified into quality [...] Read more.
The wood used in the construction of musical instruments is carefully selected, being the best quality wood from the point of view of the wood structure. However, depending on the anatomical characteristics of the wood, the resonance of wood is classified into quality classes. For example, sycamore maple wood with curly grains is appreciated by luthiers for its three-dimensional optical effect. This study highlights the statistical correlations between the physical and anatomical characteristics of sycamore maple wood and its acoustic and elastic properties, compared to the types of wood historically used in violins. The methods used were based on the determination of the acoustic properties with the ultrasound method, the color of the wood with the three coordinates in the CIELab system and the statistical processing of the data. The sycamore maple wood samples were divided into anatomical quality classes in accordance with the selection made by the luthiers. The results emphasized the multiple correlations between density, brightness, degree of red, width of annual rings, acoustic and elastic properties, depending on the quality classes. In conclusion, the work provides a valuable database regarding the physical–acoustic and elastic properties of sycamore maple wood. Full article
(This article belongs to the Special Issue Novelties in Wood Engineering and Forestry)
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10 pages, 3596 KiB  
Article
Forensic Facial Approximation of 5000-Year-Old Female Skull from Shell Midden in Guar Kepah, Malaysia
by Johari Yap Abdullah, Cicero Moraes, Mokhtar Saidin, Zainul Ahmad Rajion, Helmi Hadi, Shaiful Shahidan and Jafri Malin Abdullah
Appl. Sci. 2022, 12(15), 7871; https://doi.org/10.3390/app12157871 - 5 Aug 2022
Cited by 17 | Viewed by 11180
Abstract
Forensic facial approximation was applied to a 5000-year-old female skull from a shell midden in Guar Kepah, Malaysia. The skull was scanned using a computed tomography (CT) scanner in the Radiology Department of the Hospital Universiti Sains Malaysia using a Light Speed Plus [...] Read more.
Forensic facial approximation was applied to a 5000-year-old female skull from a shell midden in Guar Kepah, Malaysia. The skull was scanned using a computed tomography (CT) scanner in the Radiology Department of the Hospital Universiti Sains Malaysia using a Light Speed Plus scanner with a 1 mm section thickness in spiral mode and a 512 × 512 matrix. The resulting images were stored in Digital Imaging and Communications in Medicine (DICOM) format. A three-dimensional (3D) model of the skull was obtained from the CT scan data using Blender’s 3D modelling and animation software. After the skull was reconstructed, it was placed on the Frankfurt plane, and soft tissue thickness markers were placed based on 34 Malay CT scan data of the nose and lips. The technique based on facial approximation by data extracted from facial measurements of living individuals showed greater anatomical coherence when combined with anatomical deformation. The facial approximation in this study will pave the way towards understanding face prediction based on skull structures, soft tissue prediction rules, and soft tissue thickness descriptors. Full article
(This article belongs to the Special Issue 3D Virtual Reconstruction for Archaeological Sites)
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20 pages, 2251 KiB  
Article
Deep Semi-Supervised Algorithm for Learning Cluster-Oriented Representations of Medical Images Using Partially Observable DICOM Tags and Images
by Teo Manojlović and Ivan Štajduhar
Diagnostics 2021, 11(10), 1920; https://doi.org/10.3390/diagnostics11101920 - 17 Oct 2021
Cited by 5 | Viewed by 2684
Abstract
The task of automatically extracting large homogeneous datasets of medical images based on detailed criteria and/or semantic similarity can be challenging because the acquisition and storage of medical images in clinical practice is not fully standardised and can be prone to errors, which [...] Read more.
The task of automatically extracting large homogeneous datasets of medical images based on detailed criteria and/or semantic similarity can be challenging because the acquisition and storage of medical images in clinical practice is not fully standardised and can be prone to errors, which are often made unintentionally by medical professionals during manual input. In this paper, we propose an algorithm for learning cluster-oriented representations of medical images by fusing images with partially observable DICOM tags. Pairwise relations are modelled by thresholding the Gower distance measure which is calculated using eight DICOM tags. We trained the models using 30,000 images, and we tested them using a disjoint test set consisting of 8000 images, gathered retrospectively from the PACS repository of the Clinical Hospital Centre Rijeka in 2017. We compare our method against the standard and deep unsupervised clustering algorithms, as well as the popular semi-supervised algorithms combined with the most commonly used feature descriptors. Our model achieves an NMI score of 0.584 with respect to the anatomic region, and an NMI score of 0.793 with respect to the modality. The results suggest that DICOM data can be used to generate pairwise constraints that can help improve medical images clustering, even when using only a small number of constraints. Full article
(This article belongs to the Section Machine Learning and Artificial Intelligence in Diagnostics)
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11 pages, 702 KiB  
Article
On the Left Ventricular Remodeling of Patients with Stenotic Aortic Valve: A Statistical Shape Analysis
by Salvatore Cutugno, Tommaso Ingrassia, Vincenzo Nigrelli and Salvatore Pasta
Bioengineering 2021, 8(5), 66; https://doi.org/10.3390/bioengineering8050066 - 13 May 2021
Cited by 10 | Viewed by 3520
Abstract
The left ventricle (LV) constantly changes its shape and function as a response to pathological conditions, and this process is known as remodeling. In the presence of aortic stenosis (AS), the degenerative process is not limited to the aortic valve but also involves [...] Read more.
The left ventricle (LV) constantly changes its shape and function as a response to pathological conditions, and this process is known as remodeling. In the presence of aortic stenosis (AS), the degenerative process is not limited to the aortic valve but also involves the remodeling of LV. Statistical shape analysis (SSA) offers a powerful tool for the visualization and quantification of the geometrical and functional patterns of any anatomic changes. In this paper, a SSA method was developed to determine shape descriptors of the LV under different degrees of AS and thus to shed light on the mechanistic link between shape and function. A total of n=86 patients underwent computed tomography (CT) for the evaluation of valvulopathy were segmented to obtain the LV surface and then were automatically aligned to a reference template by rigid registrations and transformations. Shape modes of the anatomical LV variation induced by the degree of AS were assessed by principal component analysis (PCA). The first shape mode represented nearly 50% of the total variance of LV shape in our patient population and was mainly associated to a spherical LV geometry. At Pearson’s analysis, the first shape mode was positively correlated to both the end-diastolic volume (p<0.01, R=0.814) and end-systolic volume (p<0.01, and R=0.922), suggesting LV impairment in patients with severe AS. A predictive model built with PCA-related shape modes achieved better performance in stratifying the occurrence of adverse events with respect to a baseline model using clinical demographic data as risk predictors. This study demonstrated the potential of SSA approaches to detect the association of complex 3D shape features with functional LV parameters. Full article
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23 pages, 4197 KiB  
Article
Local Ternary Cross Structure Pattern: A Color LBP Feature Extraction with Applications in CBIR
by Qinghe Feng, Ying Wei, Yugen Yi, Qiaohong Hao and Jiangyan Dai
Appl. Sci. 2019, 9(11), 2211; https://doi.org/10.3390/app9112211 - 29 May 2019
Cited by 6 | Viewed by 2955
Abstract
With the advent of medical endoscopes, earth observation satellites and personal phones, content-based image retrieval (CBIR) has attracted considerable attention, triggered by its wide applications, e.g., medical image analytics, remote sensing, and person re-identification. However, constructing effective feature extraction is still recognized as [...] Read more.
With the advent of medical endoscopes, earth observation satellites and personal phones, content-based image retrieval (CBIR) has attracted considerable attention, triggered by its wide applications, e.g., medical image analytics, remote sensing, and person re-identification. However, constructing effective feature extraction is still recognized as a challenging problem. To tackle this problem, we first propose the five-level color quantizer (FLCQ) to acquire a color quantization map (CQM). Secondly, according to the anatomical structure of the human visual system, the color quantization map (CQM) is amalgamated with a local binary pattern (LBP) map to construct a local ternary cross structure pattern (LTCSP). Third, the LTCSP is further converted into the uniform local ternary cross structure pattern (LTCSPuni) and the rotation-invariant local ternary cross structure pattern (LTCSPri) in order to cut down the computational cost and improve the robustness, respectively. Finally, through quantitative and qualitative evaluations on face, objects, landmark, textural and natural scene datasets, the experimental results illustrate that the proposed descriptors are effective, robust and practical in terms of CBIR application. In addition, the computational complexity is further evaluated to produce an in-depth analysis. Full article
(This article belongs to the Section Optics and Lasers)
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12 pages, 4672 KiB  
Article
The Mite-Gallery Unit: A New Concept for Describing Scabies through Entodermoscopy
by Gaetano Scanni
Trop. Med. Infect. Dis. 2019, 4(1), 48; https://doi.org/10.3390/tropicalmed4010048 - 16 Mar 2019
Cited by 15 | Viewed by 21948
Abstract
Scabies has always represented a diagnostic challenge for dermatologists, especially in subclinical cases or in atypical ones due to the coexistence of other diseases. Fortunately, dermatoscopy has enabled easier and faster in situ diagnosis. The aim of this study is to examine old [...] Read more.
Scabies has always represented a diagnostic challenge for dermatologists, especially in subclinical cases or in atypical ones due to the coexistence of other diseases. Fortunately, dermatoscopy has enabled easier and faster in situ diagnosis. The aim of this study is to examine old and new dermatoscopic signs that Sarcoptes scabiei produces on the skin during its whole life cycle through entodermoscopy (dermatoscopy with an entomological focus) which, unlike traditional optical microscope examination, allows the local micro-environment to be preserved intact. Patients were enrolled during outbreaks of scabies from hospitals or nursing homes for the elderly in Bari (Italy). The study was performed applying both immersion and polarized dry dermatoscopy. The systematic use of dermatoscopy highlighted the morphological complexity of the Sarcoptes tunnel that had been described previously as a simple unitary structure. On the contrary, it is possible to distinguish three separate segments of the burrow that introduce a new anatomo-functional concept called the Mite-Gallery Unit (MGU). This approach, based on the mite life cycle and local skin turnover (the latter usually being ignored), allows the dermatologist to recognize not only Sarcoptes using the gallery, but also new descriptors including tunnels without Sarcoptes, those with acari alone, and those with associated signs of inflammation. The diagnosis of scabies using optical microscopy until recently has always involved demonstrating the mite and its products outside the human body (on a glass slide) without taking into account exactly what happens within the epidermis. Entodermoscopy is a term used to encapsulate both the presence of the parasite, the usual target of microscopy, and the changes produced in the superficial layers of the epidermis in situ. Thus, the scabies tunnel or burrow can be shown to be composed of three parts, the Head, Body, and Tail, in which different events affecting both mite and host develop. The Mite-Gallery Unit provides a new anatomical and functional explanation of scabies because it provides a more comprehensive in vivo and in situ dermatoscopic diagnosis. In this respect, dermatoscopy takes into account the behavior of the mite in addition to its interaction with its habitat, the human skin. Full article
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