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18 pages, 5494 KB  
Article
Multi-Source Monitoring of High-Temperature Heat Damage During Summer Maize Flowering Period Based on Machine Learning
by Xiaofei Wang, Hongwei Tian, Lin Cheng, Fangmin Zhang and Lizhu Xing
Agriculture 2026, 16(2), 207; https://doi.org/10.3390/agriculture16020207 - 13 Jan 2026
Viewed by 215
Abstract
With the intensification of global climate change, high temperatures have emerged as a major abiotic stressor adversely affecting summer maize yields in North China. This study presents a high-resolution monitoring framework for Henan Province. First, an hourly, high-resolution (0.02° × 0.02°) near-surface air [...] Read more.
With the intensification of global climate change, high temperatures have emerged as a major abiotic stressor adversely affecting summer maize yields in North China. This study presents a high-resolution monitoring framework for Henan Province. First, an hourly, high-resolution (0.02° × 0.02°) near-surface air temperature dataset was generated by fusing Himawari-8 satellite observations, ERA5 reanalysis data, and ground-based measurements through a machine learning approach. Among the tested algorithms (support vector regression, random forest, and XGBoost), XGBoost achieved the best performance (R2 = 0.933 and RMSE = 0.841 °C). Second, a High-Temperature Damage Index (HTDI) was constructed using hourly temperature thresholds of 32 °C and 35 °C, respectively. The index exhibited a statistically significant but modest negative correlation with ear grain number (R2 = 0.054 and p = 0.0007). Spatial assessment revealed intensified heat damage in 2024 (average HTDI = 0.51; over 67% of the area experienced moderate or worse damage) compared to 2023 (average HTDI = 0.22), with severe damage concentrated in south–central and east–central Henan. This approach surpasses the limitations of conventional daily scale assessments by enabling refined, hourly monitoring of high-temperature heat stress. It not only advances the deep integration of remote sensing and machine learning in agricultural meteorology but also provides technical support for addressing food security challenges under climate change. Full article
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23 pages, 2464 KB  
Article
Biosynthesis of UV-Absorbing Mycosporine-like Amino Acids and Transcriptomic Profiling of Differential Gene Expression in Green Microalga Under Abiotic Stresses
by Georgia Tsintzou, Evmorfia Bataka, Georgia Tagkalaki, Sofoklis Keisaris, Nikolaos Tsiropoulos, Nikolaos Labrou and Panagiotis Madesis
Int. J. Mol. Sci. 2026, 27(1), 537; https://doi.org/10.3390/ijms27010537 - 5 Jan 2026
Viewed by 294
Abstract
Microalgae display remarkable resilience to harsh environments, partly through the biosynthesis of diverse secondary metabolites. Cyanobacteria and red algae are well known to produce mycosporine-like amino acids (MAAs)—low-molecular-weight, water-soluble UV-absorbing compounds with anti-inflammatory, anticancer, and antimicrobial activities. By contrast, green microalgae typically lack [...] Read more.
Microalgae display remarkable resilience to harsh environments, partly through the biosynthesis of diverse secondary metabolites. Cyanobacteria and red algae are well known to produce mycosporine-like amino acids (MAAs)—low-molecular-weight, water-soluble UV-absorbing compounds with anti-inflammatory, anticancer, and antimicrobial activities. By contrast, green microalgae typically lack detectable MAAs under standard conditions, and their responses under abiotic stress remain poorly characterized. Here, we investigated the freshwater green microalga Jaagichlorella luteoviridis grown under three stressors (salinity, heat, and UV) and assessed MAA induction. High-performance liquid chromatography (HPLC) revealed that stressed cultures accumulated multiple MAAs, whereas untreated controls showed no such accumulation. All stress treatments (UV, salinity, and heat) produced a substantial increase in peak intensity at 323–350 nm, whereas the control samples showed significantly lower absorption in this region. We also optimized an MAA extraction protocol suitable for “green” downstream applications in the pharmaceutical, nutraceutical, and cosmeceutical sectors and formulated an emulsion showing preliminary positive results and exhibiting an increased SPF index from 3.60 (control) to 3.78 when 0.2% MAA extract was added. Transcriptomic profiling against a reference genome revealed stress-specific differential gene expression and overexpression of specific genes of the MAA pathway, like ArioC and AroM/Aro1 SAM methyltransferases, thus identifying candidate targets for engineering enhanced MAA production. Given market demand for environmentally friendly and safe bioactives, microalgae represent a promising source of these valuable molecules. Full article
(This article belongs to the Special Issue Recent Research of Natural Products from Microalgae and Cyanobacteria)
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22 pages, 5901 KB  
Review
Advances in Micro- and Macrobiological Strategies for Pest Control in Berry Production Systems: A Critical Review
by Oscar Giovanni Gutiérrez-Cárdenas, Humberto Javier López-Macías, Kolima Peña-Calzada, Gerardo Arias-Robledo, Guadalupe Oyoque-Salcedo, Isaac Zepeda-Jazo, Pedro Damián Loeza-Lara, Martin Heil and Omar Fabián Hernández-Zepeda
Plants 2026, 15(1), 144; https://doi.org/10.3390/plants15010144 - 4 Jan 2026
Viewed by 623
Abstract
Berry crops such as strawberry Fragaria × ananassa (Weston), raspberry Rubus idaeus L., blackberry Rubus ulmifolius Schott, 1818, and blueberry Vaccinium myrtillus L. are economically and nutritionally valuable worldwide. However, the intensive use of synthetic pesticides for pest management in these crops has [...] Read more.
Berry crops such as strawberry Fragaria × ananassa (Weston), raspberry Rubus idaeus L., blackberry Rubus ulmifolius Schott, 1818, and blueberry Vaccinium myrtillus L. are economically and nutritionally valuable worldwide. However, the intensive use of synthetic pesticides for pest management in these crops has led to ecological imbalance, pest resistance, and negative effects on non-target organisms and human health. The integration of biological control agents into sustainable integrated pest management (IPM) systems represents an alternative. This review compiles and evaluates current advances in the application of baculoviruses (BVs), entomopathogenic fungi (EPFs), nematodes (EPNs), predatory mites (PMs), and parasitoid wasps (PWs) for pest suppression in berry crops. Emphasis was placed on their ecological interactions, host specificity, and compatibility within IPM frameworks. The combined use of micro- and macrobiological control agents effectively reduces key pest populations. However, field efficacy remains influenced by abiotic stressors such as UV radiation, temperature fluctuations, and chemical incompatibility. The integration of native micro- and macrobiological control agents of through conservation biological control (CBC) strategies can enhance sustainability in berry production systems. Future efforts should focus on formulation improvements, adaptive management under field conditions, and synergistic interactions among microbial and arthropod natural enemies. Full article
(This article belongs to the Special Issue Translating Ecological Research into Biological Control Strategies)
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21 pages, 2849 KB  
Review
Arbuscular Mycorrhizal Fungi Mitigate Crop Multi-Stresses Under Mediterranean Climate: A Systematic Review
by Claudia Formenti, Giovanni Mauromicale, Gaetano Pandino and Sara Lombardo
Agronomy 2026, 16(1), 113; https://doi.org/10.3390/agronomy16010113 - 1 Jan 2026
Viewed by 467
Abstract
Agricultural systems in Mediterranean-type climates are increasingly threatened by drought, salinity, extreme temperatures, heavy metal contamination, and pathogen pressure, all of which undermine crop productivity and agroecosystem stability. In this context, arbuscular mycorrhizal fungi (AMF), natural symbionts of most terrestrial plants, emerge as [...] Read more.
Agricultural systems in Mediterranean-type climates are increasingly threatened by drought, salinity, extreme temperatures, heavy metal contamination, and pathogen pressure, all of which undermine crop productivity and agroecosystem stability. In this context, arbuscular mycorrhizal fungi (AMF), natural symbionts of most terrestrial plants, emerge as key biological agents capable of enhancing crop resilience. Following PRISMA guidelines, this systematic review synthesizes current knowledge on the role of AMF in mitigating abiotic and biotic stresses, highlighting their potential as a central component of sustainable Mediterranean agriculture. The available evidence demonstrates that AMF symbiosis significantly increases plant tolerance to multiple stressors across major crop families, including Poaceae, Fabaceae, Solanaceae, and Asteraceae. Under abiotic constraints, AMF improve water and nutrient uptake via extensive hyphal networks, modulate ion homeostasis under salinity, enhance tolerance to thermal extremes, and reduce heavy metal toxicity by immobilizing contaminants. Regarding biotic stresses, AMF induce systemic resistance to pathogens, stimulate secondary metabolite production that deters herbivores, and suppress parasitic nematode populations. Moreover, co-inoculation with other biostimulants, such as plant growth-promoting rhizobacteria, shows synergistic benefits, further improving crop productivity and resource-use efficiency. Overall, AMF represent an effective and multifunctional nature-based tool for improving the sustainability of Mediterranean agroecosystems. However, further research is required to evaluate AMF performance under simultaneous multiple stress factors, thereby reflecting real-world conditions and enabling a more integrated understanding of their agronomic potential. Full article
(This article belongs to the Special Issue Adaptations and Responses of Cropping Systems to Climate Change)
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23 pages, 1754 KB  
Review
Recent Advances on the Individual Roles and Emerging Synergistic Effects of Plant Growth-Promoting Rhizobacteria and Silicon Nanoparticles in Mitigating Salinity Stress
by Sajida, Hamdy Kashtoh, Tensangmu Lama Tamang and Kwang-Hyun Baek
Plants 2025, 14(23), 3632; https://doi.org/10.3390/plants14233632 - 28 Nov 2025
Viewed by 843
Abstract
Soil salinity is a serious abiotic stressor threatening global agriculture, currently affecting nearly 20% of irrigated land, with projections suggesting that almost 50% of cultivated areas may be impacted by 2050. Plant growth-promoting rhizobacteria (PGPR) and Silicon (Si) have been widely investigated for [...] Read more.
Soil salinity is a serious abiotic stressor threatening global agriculture, currently affecting nearly 20% of irrigated land, with projections suggesting that almost 50% of cultivated areas may be impacted by 2050. Plant growth-promoting rhizobacteria (PGPR) and Silicon (Si) have been widely investigated for their individual roles in improving plant tolerance to salinity, yet their combined application—particularly using Si nanoparticles (SiNPs), remains underexplored. This review synthesizes current knowledge on PGPR, SiNPs, and their synergistic effects in mitigating salinity stress, with emphasis on physiological, biochemical, and molecular mechanisms. Special attention is given to Si-mediated regulation of stress-responsive genes (e.g., RD29B, DREB2b, RAB18, HKT1, WRKY TFs, CAT, POD) and PGPR-induced gene expression (e.g., GmST1, GmLAX3, NHX1, NRT2.2, GR), which are directly linked to ion homeostasis, osmolyte accumulation, and antioxidant activation. In addition, crop-specific case studies and emerging molecular insights are highlighted to demonstrate practical applications. Despite these promising findings, significant challenges remain, including the stability of nanoformulations, microbial compatibility, and the lack of field-scale validation under diverse agro-climatic conditions. This review highlights knowledge gaps and briefly outlines future directions for the integrated use of PGPR and SiNPs as sustainable strategies to enhance crop resilience under salinity stress. Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
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26 pages, 7731 KB  
Review
The Role of Precision Coffee Farming in Mitigating the Biotic and Abiotic Stresses Related to Climate Change in Saudi Arabia: A Review
by Hanan Abo El-Kassem Bosly, Rehab A. Dawoud, Tahany Noreldin, Rym Hassani and Habib Khemira
Sustainability 2025, 17(23), 10550; https://doi.org/10.3390/su172310550 - 25 Nov 2025
Viewed by 1111
Abstract
In Saudi Arabia, coffee (Coffea arabica L.) has been grown for centuries on the mountain terraces of the southwestern regions. Jazan region accounts for about 80% of the total production. The acreage allocated to coffee is comparatively small but it is expanding [...] Read more.
In Saudi Arabia, coffee (Coffea arabica L.) has been grown for centuries on the mountain terraces of the southwestern regions. Jazan region accounts for about 80% of the total production. The acreage allocated to coffee is comparatively small but it is expanding rapidly thanks to a strong government-supported drive to increase local coffee production. Despite the initial success, the effort is hampered by the limited water supply available for irrigating the new plantings and the increased incidence of pests and diseases. The magnitude of these natural handicaps appears to have increased as of late, apparently due to climate change (CC). This review examines strategies to mitigate the consequences of CC on the coffee sector through the implementation of precision agriculture (PA) techniques, with the focus on addressing the challenges posed by biotic and abiotic stresses. The impact of CC is both direct by rendering present growing regions unsuitable and indirect by amplifying the severity of biotic and abiotic tree stressors. Precision agriculture (PA) techniques can play a key role in tackling these challenges through data-driven tools like sensors, GIS, remote sensing, machine learning and smart equipment. By monitoring soil, climate, and crop conditions, PA enables targeted irrigation, fertilization, and pest control thus improving efficiency and sustainability. This approach reduces costs, conserves resources, and minimizes environmental impact, making PA essential for building climate-resilient and sustainable coffee production systems. The review synthesizes insights from case studies, research papers, and other scientific literature concerned with precision farming practices and their effectiveness in alleviating biotic and abiotic pressures on coffee trees. Additionally, it evaluates technological advances, identifies existing knowledge gaps, and suggests areas for future research. Ultimately, this study seeks to contribute to enhancing the resilience of coffee farming in Saudi Arabia amidst ongoing CC challenges by educating farmers about the potential of PA technologies. Full article
(This article belongs to the Section Air, Climate Change and Sustainability)
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11 pages, 1019 KB  
Article
Effects of Soil Rhizobia and Drought on Plant–Vector–Pathogen Interactions on a Legume Host
by Pooja Malhotra, Saumik Basu, Benjamin W. Lee, Chase W. Baerlocher, Liesl Oeller and David W. Crowder
Appl. Sci. 2025, 15(23), 12442; https://doi.org/10.3390/app152312442 - 24 Nov 2025
Viewed by 322
Abstract
Symbiosis between rhizobia and legumes can affect plant tolerance to abiotic and biotic stressors such as drought and herbivores. Yet few studies have assessed how soil rhizobia impact plants that face abiotic and biotic stress simultaneously. This is a major knowledge gap given [...] Read more.
Symbiosis between rhizobia and legumes can affect plant tolerance to abiotic and biotic stressors such as drought and herbivores. Yet few studies have assessed how soil rhizobia impact plants that face abiotic and biotic stress simultaneously. This is a major knowledge gap given that many aspects of plant growth and defense are affected by interacting stressors, and these interactions can affect legume–rhizobia symbiosis. Here we assessed rhizobia-mediated interactions between a legume host (Pisum sativum), a vector herbivore (pea aphid, Acyrthosiphon pisum), a plant virus (pea enation mosaic virus, PEMV), and soil water availability. We show that rhizobia promoted plant growth and mitigated osmotic stress caused by reduced soil water availability. Rhizobia also increased plant tolerance to PEMV under high soil moisture conditions but had no measurable effect on PEMV when plants were grown in soil with reduced water. To assess the mechanisms that mediated these complex interactions, we measured gene transcripts related to phytohormone signaling and found that salicylic acid, jasmonic acid, abscisic acid, and ethylene signaling were affected by interactions between rhizobia and water availability; each of these pathways affects PEMV transmission. Our study shows that beneficial effects of rhizobia on legumes are impacted by abiotic and biotic stress, and outcomes of symbiosis may be context-dependent in field settings. Full article
(This article belongs to the Special Issue Effects of the Soil Environment on Plant Growth)
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17 pages, 4874 KB  
Article
Exploration and Comparison of High-Throughput Sequencing Analysis of Endophytic Fungal Communities in Morinda tinctoria and Pithecellobium dulce
by Michael Joe Xavier Sneha, Israel Mani, Myithili Thangavel, Senthuran Suresh Kumar, Pandy Rajapriya, Nagendraprabhu Ponnuraj and Mohan Pandi
Microbiol. Res. 2025, 16(11), 237; https://doi.org/10.3390/microbiolres16110237 - 12 Nov 2025
Viewed by 530
Abstract
Fungal endophytes can be identified in a wide range of plant species which help to protect from both abiotic and biotic stressors. This research focused on using high-throughput sequencing (HTS) analysis to gain insight into the foliar endophytic fungal diversity between Morinda tinctoria [...] Read more.
Fungal endophytes can be identified in a wide range of plant species which help to protect from both abiotic and biotic stressors. This research focused on using high-throughput sequencing (HTS) analysis to gain insight into the foliar endophytic fungal diversity between Morinda tinctoria and Pithecellobium dulce. The study obtained a total of 118,547 sequencing reads, which were grouped into 266 Operational Taxonomic Units (OTUs) with a 97% similarity threshold. M. tinctoria had more OTUs than P. dulce. Alpha diversity results show that both plant species support varied microbial communities with similar but distinct biodiversity profiles. The Shannon index revealed that M. tinctoria had considerably more fungal diversity than P. dulce. The correlation matrix and PCoA depicts the pairwise correlations between several soil metrics such as the total nitrogen level, entire phosphorus, overall potassium, and the electrical conductivity, total carbon from organic matter, pH levels, manganese, iron, zinc, copper, and boron. The OTUs were classified into 5 phyla, 18 classes, 40 orders, 70 families, and 36 genera, where the phylum Ascomycota has a relative abundance of (50–55%), followed by Basidiomycota at (55–60%). The most abundant genera were Wallemia (30–35%), Saitozyma (30–40%), and Talaromyces (20–25%), with average relative abundances. Unassigned genera show a significant proportion of fungal taxa that are still taxonomically unclear. A comparative analysis has been performed between the two plants, M. tinctoria has a higher fungal diversity, which is frequently associated with increased ecological stability, disease resistance, and better functional relationships with the host plant. Full article
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16 pages, 948 KB  
Article
Membrane Lipids and Osmolytes Rearrangements Under Cell Wall Stress in Aspergillus niger
by Elena A. Ianutsevich, Olga A. Danilova, Sofiya A. Saharova and Vera M. Tereshina
Int. J. Mol. Sci. 2025, 26(22), 10888; https://doi.org/10.3390/ijms262210888 - 10 Nov 2025
Viewed by 579
Abstract
The cell wall integrity pathway is activated in response to cell wall stress (CWS). The defense system in aspergilli employs three transcription factors—RlmA, MsnA, and CrzA—which also facilitate adaptation to various abiotic stressors and involve alterations in cytosolic osmolyte composition and membrane lipid [...] Read more.
The cell wall integrity pathway is activated in response to cell wall stress (CWS). The defense system in aspergilli employs three transcription factors—RlmA, MsnA, and CrzA—which also facilitate adaptation to various abiotic stressors and involve alterations in cytosolic osmolyte composition and membrane lipid profiles. However, their role in adaptation to CWS remains unclear. In Aspergillus niger, CWS induced by Congo red and calcofluor white caused a pronounced cessation of apical growth, accompanied by hyphal globular swelling and an increase in chitin and glucan content in the cell wall. Regarding the osmolyte composition, which predominantly consists of low levels of glycerol and mannitol, glycerol levels were reduced under CWS. Neither the composition nor the amounts of membrane and storage lipids changed following CWS; however, the degree of unsaturation of phospholipids increased due to a higher proportion of linolenic acid, potentially enhancing membrane fluidity. These minor rearrangements of membrane lipids and osmolytes do not confirm their involvement in the adaptation to CWS induced by Congo red and calcofluor white, contrary to previous assumptions based on studies of cell wall integrity pathways. Full article
(This article belongs to the Section Molecular Biology)
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21 pages, 6032 KB  
Article
Characterization of With-No-Lysine Kinase Family Genes and Roles of CaWNK6 in the Heat Tolerance of Pepper (Capsicum annuum L.)
by Jianwei Zhang, Libo Liu, Jianxin Fan, Yao Jiang, Xianjun Chen, Qin Yang and Huanxiu Li
Plants 2025, 14(22), 3430; https://doi.org/10.3390/plants14223430 - 9 Nov 2025
Viewed by 600
Abstract
With-No-Lysine (WNK) kinases constitute a subgroup within the serine/threonine protein kinase family, characterized by the absence of a catalytic lysine residue in the kinase subdomain II located in their N-terminal region. These kinases play critical roles in regulating plant growth, development, and responses [...] Read more.
With-No-Lysine (WNK) kinases constitute a subgroup within the serine/threonine protein kinase family, characterized by the absence of a catalytic lysine residue in the kinase subdomain II located in their N-terminal region. These kinases play critical roles in regulating plant growth, development, and responses to abiotic stressors. However, members of the WNK and their responses to heat stress in pepper (Capsicum annuum L.) remain unexplored. In the present study, we identified eleven WNK genes within the genome of pepper cultivar ‘UCD-10X-F1’ and designated them CaWNK1 to CaWNK11 according to their chromosomal positions. Comprehensive analyses were conducted to elucidate their phylogenetic relationships, chromosomal distribution, collinearity, gene structure, protein properties, and cis-acting elements within promoter regions. The findings revealed that the CaWNK gene family segregates into five distinct subgroups. Comparative genomic analysis identified eleven and nine segmental duplication gene pairs between pepper and tomato and between pepper and Arabidopsis, respectively. Within the pepper genome, two pairs of segmentally duplicated genes and two pairs of tandemly repeated genes were also detected. The CaWNK gene sequences in pepper exhibited a high degree of conservation; however, variations were observed in the number of introns and exons. Analysis of the promoter regions revealed an abundance of cis-acting elements associated with growth and development, stress responses, and hormone regulation. Subsequent transcriptomic analyses demonstrated that CaWNK genes displayed tissue-specific expression patterns and differential expression levels following treatments with exogenous plant hormones and abiotic stresses. Notably, the expression of CaWNK6 was significantly up-regulated under heat stress conditions. To elucidate the functional role of CaWNK6, virus-induced gene silencing (VIGS) was employed to suppress its expression in pepper seedlings. Silencing of CaWNK6 resulted in disrupted tissue architecture, stomatal closure, and diminished heat tolerance. These phenotypic changes correlated with excessive accumulation of reactive oxygen species (ROS), reduced activity of antioxidant enzymes, and down-regulation of heat shock factor (HSF) genes in the silenced plants. Collectively, these findings offer valuable insights into the functional roles of CaWNK genes and hold significant implications for the development of novel heat-tolerant pepper cultivars. Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
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13 pages, 1835 KB  
Article
The Sprayed Application of Recombinantly Expressed CpRap2.4A Confers Protective Activity Against Heat Stress in Nicotiana tabacum
by Diobel González-Stewart, Francisco Guillén-Chable, Miguel Ángel Herrera-Alamillo, Roberth Armando Us Santamaría, José Luis Andrade, Anne C. Gschaedler Mathis, Enrique Castaño, Luis Joel Figueroa-Yáñez and Luis Carlos Rodríguez-Zapata
Crops 2025, 5(6), 80; https://doi.org/10.3390/crops5060080 - 6 Nov 2025
Viewed by 417
Abstract
Drastic changes in temperature, salinity of soils and drought are some of the most studied abiotic stressors in important crops. Plants have developed various biochemical mechanisms to counteract these conditions. Transcription factors play a significant role in regulating stress responses. Previously, in our [...] Read more.
Drastic changes in temperature, salinity of soils and drought are some of the most studied abiotic stressors in important crops. Plants have developed various biochemical mechanisms to counteract these conditions. Transcription factors play a significant role in regulating stress responses. Previously, in our lab, it was identified that the CpRap2.4a protein, which belongs to the AP2/ERF superfamily, is related to the response to abiotic stress from extreme temperature, and confers thermal tolerance to Carica papaya CV. This study presents a randomized experimental strategy for the analysis of the physiological and biochemical responses of Nicotiana tabacum plants subjected to heat stress, and how the foliar application of the recombinantly expressed CpRap2.4a can modulate beneficial responses. Plants subjected to heat stress present a healthier physiology, as clearly shown by biochemical parameters. Moreover, physiological parameters also suggest an improvement of heat tolerance compared with the control group. Scanning electron microscopy suggests that stomatal aperture and conductance are the key mechanisms for how recombinantly expressed CpRap2.4a can act as a regulatory player to heat stress. Full article
(This article belongs to the Topic Applications of Biotechnology in Food and Agriculture)
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53 pages, 1287 KB  
Review
Climate Change Impacts on Greenhouse Horticulture in the Mediterranean Basin: Challenges and Adaptation Strategies
by Dimitrios Fanourakis, Georgios Tsaniklidis, Theodora Makraki, Nikolaos Nikoloudakis, Thomas Bartzanas, Leo Sabatino, Hicham Fatnassi and Georgia Ntatsi
Plants 2025, 14(21), 3390; https://doi.org/10.3390/plants14213390 - 5 Nov 2025
Cited by 7 | Viewed by 2866
Abstract
Greenhouse horticulture is a cornerstone of year-round vegetable production. However, escalating climate change is intensifying abiotic stressors (i.e., elevated temperatures, increased vapor pressure deficits, water shortage, and modified solar radiation), threatening both crop productivity and postharvest performance. This review synthesizes current knowledge on [...] Read more.
Greenhouse horticulture is a cornerstone of year-round vegetable production. However, escalating climate change is intensifying abiotic stressors (i.e., elevated temperatures, increased vapor pressure deficits, water shortage, and modified solar radiation), threatening both crop productivity and postharvest performance. This review synthesizes current knowledge on how these climatic shifts impact greenhouse microclimate, pest and disease patterns, energy and water requirements, as well as crop development in the Mediterranean region. This study focuses on three major crops (tomato, cucumber, and sweet pepper), which prevail in the regional protected cultivation sector. Among the climate-induced stressors examined, elevated temperature emerges as the primary environmental constraint on greenhouse productivity. In reality, however, a combination of climate-induced stressors is at play, acting simultaneously and often synergistically. Among crops, cucumber generally displays the highest sensitivity to climate-induced shifts, whereas sweet pepper tends to be the most resilient. Next, adaptive strategies are explored, including precision irrigation, structural retrofitting measures, renewable energy integration, Decision Support Systems, and climate-resilient cultivars. Regional case studies revealed diverse country-specific counteractive innovations. As key elements of inclusive climate adaptation, supportive policy frameworks and a practical agenda of targeted research priorities are outlined. In conclusion, the sustainability of greenhouse horticulture under a changing climate demands integrated, technology-driven, and region-focused approaches. Full article
(This article belongs to the Special Issue Sustainable Vegetable Production in the Era of Climate Change)
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16 pages, 5178 KB  
Article
Genome-Wide Identification of Juglans regia GABA Transcription Factors and Expression Pattern Analysis in Response to Abiotic Stress
by Yulian Wang, Bin Wang, Wei Chen, Bin Wang, Tianlei Li, Xiang Luo, Jia Xue, Xinyi Wang, Jing He and Xiujuan Wang
Genes 2025, 16(11), 1290; https://doi.org/10.3390/genes16111290 - 30 Oct 2025
Viewed by 561
Abstract
Background/Objectives: γ-aminobutyric acid (GABA), a non-protein amino, is synthesized from glutamic acid through the catalytic activity of glutamate decarboxylase (GAD). As a key signaling molecule, GABA plays a vital role in plant responses to abiotic stresses. To explore the potential involvement of [...] Read more.
Background/Objectives: γ-aminobutyric acid (GABA), a non-protein amino, is synthesized from glutamic acid through the catalytic activity of glutamate decarboxylase (GAD). As a key signaling molecule, GABA plays a vital role in plant responses to abiotic stresses. To explore the potential involvement of the GABA gene family in Juglans regia’s response to environmental stressors, a comprehensive genome-wide identification and analysis of GABA-related genes was performed. Methods: The study examined their protein features, evolutionary relationships, chromosomal locations, and promoter cis-regulatory elements. Additionally, the expression patterns of GABA family genes were analyzed in J. regia seedlings subjected to salt and drought stress. Results: Genome analysis identified three main components of the GABA metabolic pathway in J. regia: glutamate decarboxylases (GADs), GABA transaminases (GABA-Ts), and succinic semialdehyde dehydrogenases (SSADHs). These genes were unevenly distributed across 14 chromosomes, with chromosome 10 containing the highest number. Promoter analysis revealed that about 80% of cis-acting elements were linked to plant hormone regulation, such as abscisic acid (ABA), and stress responses, including drought and high-salinity. Phylogenetic analysis showed that JrGAD1 was distantly related to other JrGAD members, while certain JrGABA-T and JrSSADH genes formed closely related pairs. Under salt and drought stress, JrSSADH23 expression was highly upregulated (2.60-fold and 2.24-fold, respectively), a trend observed for most JrSSADH genes. Conclusions: These findings offer valuable insights into the molecular basis of GABA metabolism in J. regia’s stress adaptation and identify promising genetic targets for developing stress-tolerant varieties. Full article
(This article belongs to the Special Issue Molecular Mechanisms of Adaptive Evolution in Trees)
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18 pages, 5624 KB  
Article
Exploring the Role of Rhizobacteria in Sorghum bicolor Adaptation to Combined Drought and Heat Stress
by Alec Magaisa, Elizabeth Ngadze, Tshifhiwa Paris Mamphogoro, Martin Philani Moyo and Casper Nyaradzai Kamutando
Microorganisms 2025, 13(11), 2454; https://doi.org/10.3390/microorganisms13112454 - 26 Oct 2025
Viewed by 645
Abstract
Although rhizobacteria are known to improve plant adaptation to abiotic stressors, their possible contribution to the inherent resilience exhibited by crops such as Sorghum bicolor is still poorly quantified. Here, three sorghum pre-release lines and three check varieties were established and evaluated at [...] Read more.
Although rhizobacteria are known to improve plant adaptation to abiotic stressors, their possible contribution to the inherent resilience exhibited by crops such as Sorghum bicolor is still poorly quantified. Here, three sorghum pre-release lines and three check varieties were established and evaluated at two low-altitude sites of less than 600 masl. Treatments were laid out in a randomized complete block design, replicated two times. Twenty-four rhizospheric soil samples comprising six sorghum genotypes with two replications across two sites were collected, processed using Zymo Research DNA extraction protocols, and the 16S rRNA amplicon sequences were generated for bacterial diversity quantifications following the Divisive Amplicon Denoising Algorithm 2 (DADA2) workflow. Grain yield data were also recorded and expressed in tonnes per hectare. Rhizobacteria recruitment and GY performance significantly (p < 0.05) varied with sorghum genotypes. Bacterial abundance significantly (p < 0.05) associated with sorghum grain yield performance with Actinobacteriota and Firmicutes being identified to be of economic importance, explaining between 52.23 and 85.64% of the variation in grain yield performance. The modelled relationships between rhizobacteria and grain yield performance revealed R2 predicted values of up to 75.25% and a 10-fold R2 of 75.54%, implying no model overfitting. Sorghum genotypes did not consistently exhibit direct variation between genetic worth values and grain yield performance. Superior grain yield performers, namely ICSV111IN, CHITICHI, and SV4, consistently associated with high incidences of occurrence of the bacteria phyla Chloroflexi (class = Chloroflexia) and Firmicutes (class = Bacilli), whilst integrating the conventional selection method with microbial diversity data, changed the genotype performance ranking, in which all the three pre-release lines, namely, IESV91070DL, ASARECA12-3-1, and ICSV111IN, exhibited superiority over the check varieties. The results demonstrated that the inherent stress resilience exhibited by some sorghum genotypes under climate change-induced stresses such as CDHS may be influenced by specific bacterial taxa recruited in the rhizosphere environment of the plants. Hence, more effort should be made to further exploit these beneficial plant–microbe interactions for enhanced sorghum productivity under abiotic stress conditions. Full article
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21 pages, 6894 KB  
Article
Abiotic Stress Alters the Nutritional, Metabolomic, and Glycomic Profiles of Piper auritum Kunth
by Adriana Chico-Peralta, Mar Villamiel, Paola Isabel Angulo-Bejarano and Aurea K. Ramírez-Jiménez
Foods 2025, 14(20), 3543; https://doi.org/10.3390/foods14203543 - 17 Oct 2025
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Abstract
Traditional diets based on diverse edible plants are increasingly threatened by climate change, which exposes crops to abiotic and biotic stressors such as drought, soil salinity, UV radiation, microorganisms, and insect herbivory. Understanding how these conditions influence both the nutritional and nutraceutical profiles, [...] Read more.
Traditional diets based on diverse edible plants are increasingly threatened by climate change, which exposes crops to abiotic and biotic stressors such as drought, soil salinity, UV radiation, microorganisms, and insect herbivory. Understanding how these conditions influence both the nutritional and nutraceutical profiles, as well as the availability of key compounds, is essential to preserve their functional value. Piper auritum Kunth, used in Mexican gastronomy, was selected to assess two abiotic stress scenarios: drought stress (DS) and salicylic acid (SA) to simulate plant defense against pathogens and/or predators. We evaluated proximate composition, dietary fiber, total phenolics, total flavonoids, antioxidant capacity, low molecular weight carbohydrates (LMWCs), monomeric composition, and essential oil volatiles. Additionally, the simulated gastrointestinal digestion (INFOGEST) with an additional rat small-intestine extract (RSIE) revealed that both SA and DS shifted sugar distribution, especially for soluble and structural pools. SA treatment correlated with synthesis of secondary metabolites, particularly oxygenated and hydrocarbon terpenes. Both abiotic stressors modulated LMWC release during digestion, altering the distribution of sugars such as raffinose and galacturonic acid, with potential prebiotic implications. Essential oil analysis revealed stress-specific shifts in volatile composition, particularly in safrole, β-caryophyllene, and related terpenes. Beyond individual compound changes, the combined evaluation of composition, antioxidant properties, and volatile profile provides a comprehensive view of how abiotic stress can reshape the functional potential of P. auritum. To our knowledge, this is the first report on LMWC relative abundance across INFOGEST stages for a quelite species and on the integrated effect of DS and SA on its chemical profile. These findings highlight the importance of including compound release and functional traits, alongside chemical characterization, in future assessments of traditional plants under climate-related stress to safeguard their contribution to sustainable diets. Full article
(This article belongs to the Special Issue Recent Advances in Carbohydrate Functionality in Foods)
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