Search Results (34)

This study evaluated the response of two willow varieties, Salix × smithiana Willd. and Salix viminalis L. var. Gigantea, to selected heavy metals and elevated soil salinity, simulating complex environmental conditions during phytoremediation. Plants propagated from stem cuttings were cultivated in pots under field conditions in soil artificially contaminated with a mixture of Cd, Ni, Cu, Zn, and Pb salts at two concentration levels representing lower and higher guideline thresholds. Sodium chloride was added to induce salinity stress. S. × smithiana exhibited enhanced growth under combined metal and salinity stress, suggesting efficient tolerance mechanisms. This was reflected in elevated relative water content (RWC) and increased accumulation of Zn and Cd in shoots. In contrast, Gigantea showed growth inhibition and primarily sequestered metals in roots, indicating a stress-avoidance strategy and reduced metal translocation. While salinity alone negatively affected both varieties, its combination with metals mitigated growth reduction in S. × smithiana, possibly due to improved ion homeostasis or cross-tolerance. Zn and Cd displayed the highest bioconcentration and mobility. Based on bioconcentration factor (BCF) and translocation factor (TF), S. × smithiana appears suitable for phytoextraction, whereas S. viminalis var. Gigantea appears suitable for phytostabilization. These results support species-specific approaches to phytoremediation in multi-contaminant environments. Full article

In this study, five poplar clones (Populus deltoides cl. PE19/66, cl. S1-8, cl. 135/81, and Populus × euramericana cl. I-214, cl. Pannonia) and two white willow clones (Salix alba cl. 380, cl. 107/65-9) were tested in pot trials. The aim was to evaluate their potential for phytoextraction of nine heavy metals (Cd, Cr, Cu, Fe, Mn, Ni, Pb, and Zn) in three substrates, two based on soil from landfills near Belgrade and Novi Sad, and one control treatment based on nursery soil. The shoot content of all analyzed heavy metals was the highest in the BG substrate with the highest content of heavy metals and the lowest in the control substrate. White willow clone 107/65-9 achieved the highest accumulation of Cd, Cr, Fe, Ni and Pb and along with another willow clone 380 is found to act as generalists. Poplar clones performed more as specialists: I-214 and Pannonia for copper, PE 19/66 for manganese and S1-8 for nickel and zinc. Considerable differences among examined clones in heavy metal accumulation and reaction to substrates should be taken into consideration in further pot and field trials as well as in phytoremediation projects on landfills. Full article

Evidence of unintended introductions of Phytophthora species into native habitats has become increasingly prevalent in California. If not managed adequately, Phytophthora species can become devastating agricultural and forest plant pathogens. Additionally, California’s natural areas, characterized by a Mediterranean climate and dominated by chaparral (evergreen, drought-tolerant shrubs) and oak woodlands, lack sufficient baseline knowledge on Phytophthora biology and ecology, hindering effective management efforts. From 2018 to 2021, soil samples were collected from Angeles National Forest lands (Los Angeles County) with the objective of better understanding the diversity and distribution of Phytophthora species in Southern California. Forty sites were surveyed, and soil samples were taken from plant rhizospheres, riverbeds, and off-road vehicle tracks in chaparral and oak woodland areas. From these surveys, fourteen species of Phytophthora were detected, including P. cactorum (subclade 1a), P. multivora (subclade 2c), P. sp. cadmea (subclade 7a), P. taxon ‘oakpath’ (subclade 8e, first reported in this study), and several clade-6 species, including P. crassamura. Phytophthora species detected in rhizosphere soil were found underneath both symptomatic and asymptomatic plants and were most frequently associated with Salvia mellifera, Quercus agrifolia, and Salix sp. Phytophthora species were present in both chaparral and oak woodland areas and primarily in riparian areas, including detections in off-road tracks, trails, and riverbeds. Although these Mediterranean ecosystems are among the driest and most fire-prone areas in the United States, they harbor a large diversity of Phytophthora species, indicating a potential risk for disease for native Californian vegetation. Full article

Salix psammophila, C. Wang & Chang Y. Yang, a desert-adapted shrub, is recognized for its exceptional drought tolerance and plays a vital role in ecosystem maintenance. However, research on S. psammophila has been limited due to the lack of an efficient and reliable genetic transformation method, including gene functional studies. The Agrobacterium-mediated transient overexpression assay is a rapid and powerful tool for analyzing gene function in plant vivo. In this study, tissue culture seedlings of S. psammophila were utilized as the recipient materials, and the plant expression vector pCAMBIA1301, containing the GUS reporter gene, was transferred into the seedlings via an Agrobacterium-mediated method. To enhance the efficiency of the system, the effects of secondary culture time, Agrobacterium concentration, infection time, and co-culture duration on the transient transformation efficiency of S. psammophila were explored. The optimal combination for the instantaneous transformation of S. psammophila tissue culture seedlings mediated by Agrobacterium was determined as follows: a secondary culture time of 30 d, a value of OD₆₀₀ of 0.8, an infection time of 3 h, and a co-culture duration of 48 h. Subsequently, the effectiveness of the transformation system was validated using the S. psammophila drought response gene SpPP2C80. To further confirm the accuracy of the system, SpPP2C80-overexpressing Arabidopsis was constructed and drought resistance analysis was performed. The results were consistent with the transient overexpression of SpPP2C80 in S. psammophila tissue culture seedlings, indicating that this system can be effectively employed for studying gene function in S. psammophila. These findings provide essential information for investigating gene function in non-model plants and pave the way for advancements in molecular biology research in S. psammophila. Full article

Herein, we explored the ecologic niches of generalist and specialist species within the subalpine vegetation zone, a habitat of Abies sp. distributed throughout South Korea and China. We included Abies sp. habitats in inland areas of South Korea and parts of the Manchurian region of China. Rhododendron schlippenbachii Maxim., Acer pseudosieboldianum (Pax) Kom., Picea jezoensis (Siebold & Zucc.) Carrière, Betula ermanii Cham., Acer komarovii Pojark., Pinus koraiensis Siebold & Zucc., Betula davurica Pall., Betula costata Trautv., Quercus mongolica Fisch. ex Ledeb, and Sorbus commixta Hedl. were selected as generalist species. Betula chinensis Maxim., Betula platyphylla var. japonica (Miq.) H. Hara, Euonymus pauciflorus Maxim., Salix maximowiczii Kom., Cornus walteri F.T. Wangerin, Carpinus laxiflora (Siebold & Zucc.) Blume, Populus davidiana Dode, Philadelphus tenuifolius Rupr. & Maxim., Rhododendron brachycarpum D. Don ex G. Don, and Larix olgensis var. koreana (Nakai) Nakai were selected as specialist species. NMS ordination analysis showed that specialist, generalist, and other plant species distribution correlated with basal area at breast height, stand density, and species diversity index. Generalist species could be grouped based on Quercus sp., Betula sp., and Acer sp. niche spaces. Specialist species shared ecological niches with plant species found in the limestone zone, sedimentary rock zone, and valley area. Full article

Soil salinization and alkalinization are pervasive environmental issues that severely restrict plant growth and crop yield. Utilizing plant growth-promoting rhizobacteria (PGPR) is an effective strategy to enhance plant tolerance to saline–alkaline stress, though the regulatory mechanisms remain unclear. This study employed biochemical and RNA-Seq methods to uncover the critical growth-promoting effects of Trichoderma spp. on Salix linearistipularis under saline–alkaline stress. The results showed that, during saline–alkaline stress, inoculation with Trichoderma sp. M4 and M5 significantly increased the proline and soluble sugar contents in Salix linearistipularis, enhanced the activities of SOD, POD, CAT, and APX, and reduced lipid peroxidation levels, with M4 exhibiting more pronounced effects than M5. RNA-Seq analysis of revealed that 11,051 genes were upregulated after Trichoderma sp. M4 inoculation under stress conditions, with 3532 genes primarily involved in carbon metabolism, amino acid biosynthesis, and oxidative phosphorylation—processes that alleviate saline–alkaline stress. Additionally, 7519 genes were uniquely upregulated by M4 under stress, mainly enriched in secondary metabolite biosynthesis, amino acid metabolism, cyanamide metabolism, and phenylpropanoid biosynthesis. M4 mitigates saline–alkaline stress-induced damage in Salix linearistipularis seedlings by reducing oxidative damage, enhancing organic acid and amino acid metabolism, and activating phenylpropanoid biosynthesis pathways to eliminate harmful ROS. This enhances the seedlings’ tolerance to saline–alkaline stress, providing a basis for studying fungi–plant interactions under such conditions. Full article

Apiospora is widely distributed throughout the world, and usually identified as endophytes, pathogens or saprobes. In this study, six strains were isolated from Bambusaceae sp., Prunus armeniaca, Salix babylonica and saprophytic leaves in Shandong Province, China. Three new species were identified based on a multi-locus gene phylogenetic analysis using a combined dataset of ITS, LSU, TEF1α and TUB2 in conjunction with morphological assessments. Apiospora armeniaca sp. nov., Apiospora babylonica sp. nov., and Apiospora jinanensis sp. nov. have been comprehensively described and illustrated, representing significant additions to the existing taxonomy. Full article

The tree species Salix caprea shows high adaptability to different habitat conditions and is economically valuable as a woody crop for biomass production. Moreover, S. caprea is dependent on mycorrhizal fungi, which are crucial for its growth and adaptability in different environments. Hence, this study explores the ectomycorrhizal diversity of S. caprea by utilizing the taxonomy (morphotyping and a molecular approach using the ITS and LSU regions) and trait diversity (exploration types) at two test sites in Germany and Poland. In total, 19 ectomycorrhizal (EM) morphotypes of S. caprea were characterized. Seven taxa were identified at the species level (Hebeloma populinum, Cortinarius atrocoerulaeus, Inocybe hirtella, Laccaria cf. ochropurpurea, Tuber maculatum, Cenococcum geophilum, and Phialophora finlandia) and twelve at the genus level (Tomentella spp. 1–8, Hebeloma sp. 1, Inocybe sp. 1, and Tuber spp. 1–2). The EM colonization ranged from 14 to 28% of the fine root tips. At both test sites, the largest portion of the total EM colonization consisted of Thelephoraceae. The exploration types were classified as medium-distance smooth (Tomentella sp. 1–8 and L. ochropurpurea) and medium-distance fringe (C. atrocoerulaeus), while the other taxa were short-distance exploration types, highlighting their potential functional role in the adaptation and growth of S. caprea. Full article

Willow (Salix spp.) trees, found worldwide, contain secondary metabolites that are valuable as dietary supplements for animal feed and as antiparasitic compounds. We quantified secondary metabolites (phenolics, flavonoids, and salicylic acid) in ethanolic extracts from leaves and branches of three Salix acmophylla Boiss. genotypes and investigated their potential to inhibit Eimeria sp. sporulation, a major concern in ruminants. The total phenolic content of willow leaves and branches was similar in two of three different genotypes. The total flavonoid content of the branches was significantly higher than that of leaves of the same genotype; however, the salicylic acid content was significantly higher in leaves than in branches. Importantly, all extracts exhibited significant inhibition of Eimeria sporulation, where over 70% inhibition was obtained at concentrations as low as 750 mgL⁻¹. The sporulation inhibition by branch or leaf extracts exceeded 80% for leaves and 90% for branches at concentrations above 1250 mgL⁻¹. The study highlights the potential of using Salix extracts as bioactive compounds for biological control of coccidiosis in ruminants. We conclude that all parts and all investigated genotypes of S. acmophylla can provide secondary metabolites that act as a coccidiostat to treat Eimeria in goats. Full article

Microtubules, polymerized from α-tubulin (TUA) and β-tubulin (TUB) monomers, play a pivotal role in shaping plant morphogenesis according to developmental and environmental cues. Salix psammophila C. Wang & C. Y. Yang is an important shrub plant in sand-fixing afforestation in arid regions, with three significantly distinct plant types shaped under various environments, namely, upright, intermediate, and scattered types. However, how tubulin genes respond to the developmental and environmental signs in S. psammophila has been far less studied. Here, based on RNA-seq, Sanger sequencing, and real-time PCR (RT-PCR) data, we analyzed the phylogeny of tubulins and their expression profiles in S. psammophila among the three plant types. Furthermore, we analyzed the genetic structure and expression pattern of SpsTUB10 in S. psammophila under various abiotic stress treatments. In total, we identified 26 SpsTubulin genes in S. psammophila. The homologous alignment and phylogenetic analysis revealed that these SpsTubulin genes can be classified into two groups, corresponding to the TUA and TUB genes. The expression profiles of these SpsTubulin genes in various organs showed that most SpsTubulin genes were mainly expressed in the root. SpsTUB10 is a member of the TUB IIa group, consisting of two intros and three exons. The SpsTUB10 protein contains a typical GTPase domain and a C-terminal domain, with α-helix and random coil dominant in the secondary and tertiary structures. The RT-PCR results of SpsTUB10 showed an extremely significant difference in expression levels among the root and stem-developing organs between the upright and scattered types, and the transcript level of SpsTUB10 had a significantly negative correlation with the crown-height ratio. Under different treatments, we found that cold, osmotic stress, and short daylight could significantly increase SpsTUB10 expression levels compared to those in the controls, thereby supporting the positive role of SpsTUB10 in stress-induced responses. These results will provide evidence for the SpsTubulin genes’ response to the developmental and environmental cues in S. psammophila. Full article

Cytospora (Cytosporaceae, Diaporthales) is a fungal genus that usually inhabits plants as endophytes, saprobes, as well as pathogens. Species of this genus are characterized by possessing allantoid hyaline conidia and ascospores. Samples with typical Cytospora canker symptoms on Prunus davidiana, P. padus and Salix sp. were collected in Tibet and Xinjiang, China. Species were identified using both morphological and molecular approaches of combined loci of internal transcribed spacer region rDNA (ITS), the partial actin (act) region, RNA polymerase II second largest subunit (rpb2), the translation elongation factor 1-alpha (tef1) gene and the partial be-ta-tubulin (tub2) gene. Six isolates in the present study formed three distinct clades from previously known species. Cytospora hejingensis sp. nov. from Salix sp., C. jilongensis sp. nov. from P. davidiana and C. kunsensis from P. padus were proposed herein. The current study improves the understanding of species concept in Cytospora. Full article

The bacterial strain WB46 was isolated from the rhizosphere of willow plants (Salix purpurea L.) growing in soil contaminated with petroleum hydrocarbons. The strain was subjected to whole-genome shotgun sequencing using Illumina HiSeq. Its draft genome is 7.15 Mb, with a 69.55% GC content, containing 6387 protein-coding genes and 51 tRNA and 15 rRNA sequences. The quality and reliability of the genome were assessed using CheckM, attaining an estimated genome completeness of 98.75% and an estimated contamination of 1.68%. These results indicate a high-quality genome (>95%) and low contamination (<5%). Many of these genes are responsible for petroleum hydrocarbon degradation, such as alkane 1-monooxygenase (alkB) and naphthalene dioxygenase (ndo). 16S rRNA gene analysis, including in silico DNA–DNA hybridization (DDH) and average nucleotide identity (ANI), showed that strain WB46 belongs to the genus Nocardia, and the most closely related species is Nocardia asteroides. The strain WB46 showed a distance of 63.4% and sequence identity of 88.63%, respectively. These values fall below the threshold levels of 70% and 95%, respectively, suggesting that the strain WB46 is a new species. We propose the name of Nocardia canadensis sp. nov. for this new species. Interestingly, the sequence divergence of the 16S rRNA gene showed that the divergence only occurred in the V2 region. Therefore, the conventional V3–V4, V5–V7, or V8–V9 targeting metabarcoding, among others, would not be able to assess the diversity related to this new species. Full article

Mining activities create disturbed and polluted areas in which revegetation is complicated, especially in northern areas. For the first time, the state of the ecosystems in the impact zone of tailings formed during the processing of rare earth element deposits in the Subarctic have been studied. This work aimed to reveal aspects of accumulation and translocation of trace and biogenic elements in plants (Avenella flexuosa (L.) Drejer, Salix sp., and Betula pubescens Ehrh.) that are predominantly found in primary ecosystems on the tailings of loparite ores processing. The chemical composition of soil, initial and washed plant samples was analyzed using inductively coupled plasma mass spectrometry. Factor analysis revealed that anthropogenic and biogenic factors affected the plants’ chemical composition. A deficiency of nutrients (Ca, Mg, Mn) in plants growing on tailings was found. The absorption of REE (Ce, La, Sm, Nd) by A. flexuosa roots correlated with the soil content of these elements and was maximal in the hydromorphic, which had a high content of organic matter. The content of these elements in leaves in the same site was minimal; the coefficient of REE bioaccumulation was two orders of magnitude less than in the other two sites. The high efficiency of dust capturing and the low translocation coefficient of trace elements allow us to advise A. flexuosa for remediation of REE-contained tailings and soils. Full article

Chelating agents may decrease the extent of Ni phytoextraction by reducing plant growth and soil health due to Ni toxicity during enhanced phytoextraction. Contrarily, inducing acidity in the rhizosphere of Ni-accumulating plants with plant growth-promoting rhizobacteria (PGPR) having rhizosphere acidification ability can enhance Ni phytoextraction by increasing Ni bioavailability in the soil, plant growth, and plant stress tolerance. We investigated the efficacy of a PGPR species with rhizosphere acidification potential, named Bacillus sp. ZV6 (ARB), in enhancing Ni phytoextraction by white willow (Salix alba) from a Ni-affected soil. The plants were grown for 120 days in soil with zero, threshold, and moderate Ni pollution levels (0, 50, and 100 mg Ni kg⁻¹ soil, respectively) with and without ARB inoculation. After harvest, the effects of the treatments on rhizosphere acidification and associated Ni bioavailability in this zone, Ni distribution in plants, and Ni removal from the soil were investigated. Moreover, enzyme activity, count of bacteria, biomass of microbes, and organic C in the soil, together with indices of plant growth and antioxidant defense, were evaluated. The ARB inoculation significantly improved the plant parameters and soil health and reduced plant oxidative stress at each Ni level compared to the treatments lacking ARB. Besides lowering the soil pH and increasing Ni bioavailability in the rhizosphere with respect to the bulk zone, ARB inoculation exerted additional effects. Surprisingly, the Ni 100 + ARB treatment induced the highest decrease in soil pH (0.32 unit) and an increase in DPTA-extractable Ni (0.45 mg kg⁻¹ soil) between that measured in the bulk zones and that obtained in the rhizosphere zone. Ni distribution in plant parts and Ni removal (% of total Ni) from the soil were also significantly improved with ARB inoculation, compared to the Ni treatments without ARB. The extent of Ni removal was similar for the Ni 50 + ARB (0.27%) and Ni 100 + ARB (0.25%) treatments. Concluding, ARB-inoculated Salix alba can remove similar amounts of Ni from the soil, irrespective of the Ni pollution level. Full article

Pleiotropic drug resistance (PDR) transporters, which are part of the ABCG subfamily of ATP-binding cassette (ABC) transporters, have been found to be involved in heavy metal tolerance. Salix species (willow) is widely regarded as a perfect candidate for phytoremediation of heavy metals because of its substantial biomass, strong tolerance, and remarkable capacity to accumulate heavy metals. However, the phylogeny and mechanisms underlying the response to heavy metals within the PDR family in willow have yet to be determined. In this study, we discovered and valuated a total of 21 PDR genes in the genome of Salix purpurea. The phylogenetic relationships of these genes were used to classify them into five major clades. The SpPDRs exhibited variations in exon-intron distribution patterns and gene lengths across different branches. Cis-acting elements linked to stress response, drought induction, low temperature, and defense response were discovered in the promoters of PDRs. Significant variations in the transcription levels of various PDR genes were observed across different tissues under heavy metal stress, with distinct heavy metals regulating different PDR members. In roots, PDR4 and PDR21 exhibited high expression levels. Meanwhile, PDR7 and PDR17 showed similar transcription patterns across all analyzed tissues. Furthermore, there was a significant and positive correlation between PDR5 and PDR16, whereas a significant and negative correlation was detected between PDR3 and PDR9, suggesting that the response of PDR members to heavy metals is complex and multifaceted. These findings will establish a vital basis for comprehending the biological functionalities of PDR genes, specifically their involvement in the regulation of willow’s tolerance to heavy metals. Full article