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Keywords = Raman spectra deconvolution

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15 pages, 3125 KiB  
Article
The Graphene Oxide/Gold Nanoparticles Hybrid Layers for Hydrogen Peroxide Sensing—Effect of the Nanoparticles Shape and Importance of the Graphene Oxide Defects for the Sensitivity
by Krystian Pupel, Kacper Jędrzejewski, Sylwia Zoladek, Marcin Palys and Barbara Palys
Molecules 2025, 30(3), 533; https://doi.org/10.3390/molecules30030533 - 24 Jan 2025
Cited by 2 | Viewed by 1003
Abstract
Graphene oxide (GO) and reduced graphene oxides (RGOs) show intrinsic electrocatalytic activity towards the electrocatalytic reduction of H2O2. Combining these materials with gold nanoparticles results in highly sensitive electrodes, with sensitivity in the nanomolar range because the electrocatalytic properties [...] Read more.
Graphene oxide (GO) and reduced graphene oxides (RGOs) show intrinsic electrocatalytic activity towards the electrocatalytic reduction of H2O2. Combining these materials with gold nanoparticles results in highly sensitive electrodes, with sensitivity in the nanomolar range because the electrocatalytic properties of GO and nanoparticles are synergistically enhanced. Understanding the factors influencing such synergy is crucial to designing novel catalytically active materials. In this contribution, we study gold nanostructures having shapes of nanospheres (AuNSs), nanourchins (AuNUs), and nanobowls (AuNBs) combined with GO or electrochemically reduced graphene oxide (ERGO). We investigate the amperometric responses of the hybrid layers to H2O2. The AuNUs show the highest sensitivity compared to AuNBs and AuNSs. All materials are characterized by electron microscopy and Raman spectroscopy. Raman spectra are deconvoluted by fitting them with five components in the 1000–1800 cm−1 range (D*, D, D”, G, and D′). The interaction between nanoparticles and GO is visualized by the relative intensities of Raman bands (ID/IG) and other parameters in the Raman spectra, like various D”, D* band positions and intensities. The ID/IG parameter is linearly correlated with the sensitivity (R2 = 0.97), suggesting that defects in the graphene structure are significant factors influencing the electrocatalytic H2O2 reduction. Full article
(This article belongs to the Special Issue Advances in Electrochemical Nanocomposites)
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19 pages, 9100 KiB  
Article
Deep Ultraviolet Excitation Photoluminescence Characteristics and Correlative Investigation of Al-Rich AlGaN Films on Sapphire
by Zhe Chuan Feng, Ming Tian, Xiong Zhang, Manika Tun Nafisa, Yao Liu, Jeffrey Yiin, Benjamin Klein and Ian Ferguson
Nanomaterials 2024, 14(21), 1769; https://doi.org/10.3390/nano14211769 - 4 Nov 2024
Viewed by 1428
Abstract
AlGaN is attractive for fabricating deep ultraviolet (DUV) optoelectronic and electronic devices of light-emitting diodes (LEDs), photodetectors, high-electron-mobility field-effect transistors (HEMTs), etc. We investigated the quality and optical properties of AlxGa1−xN films with high Al fractions (60–87%) grown on [...] Read more.
AlGaN is attractive for fabricating deep ultraviolet (DUV) optoelectronic and electronic devices of light-emitting diodes (LEDs), photodetectors, high-electron-mobility field-effect transistors (HEMTs), etc. We investigated the quality and optical properties of AlxGa1−xN films with high Al fractions (60–87%) grown on sapphire substrates, including AlN nucleation and buffer layers, by metal–organic chemical vapor deposition (MOCVD). They were initially investigated by high-resolution X-ray diffraction (HR-XRD) and Raman scattering (RS). A set of formulas was deduced to precisely determine x(Al) from HR-XRD data. Screw dislocation densities in AlGaN and AlN layers were deduced. DUV (266 nm) excitation RS clearly exhibits AlGaN Raman features far superior to visible RS. The simulation on the AlGaN longitudinal optical (LO) phonon modes determined the carrier concentrations in the AlGaN layers. The spatial correlation model (SCM) analyses on E2(high) modes examined the AlGaN and AlN layer properties. These high-x(Al) AlxGa1−xN films possess large energy gaps Eg in the range of 5.0–5.6 eV and are excited by a DUV 213 nm (5.8 eV) laser for room temperature (RT) photoluminescence (PL) and temperature-dependent photoluminescence (TDPL) studies. The obtained RTPL bands were deconvoluted with two Gaussian bands, indicating cross-bandgap emission, phonon replicas, and variation with x(Al). TDPL spectra at 20–300 K of Al0.87Ga0.13N exhibit the T-dependences of the band-edge luminescence near 5.6 eV and the phonon replicas. According to the Arrhenius fitting diagram of the TDPL spectra, the activation energy (19.6 meV) associated with the luminescence process is acquired. In addition, the combined PL and time-resolved photoluminescence (TRPL) spectroscopic system with DUV 213 nm pulse excitation was applied to measure a typical AlGaN multiple-quantum well (MQW). The RT TRPL decay spectra were obtained at four wavelengths and fitted by two exponentials with fast and slow decay times of ~0.2 ns and 1–2 ns, respectively. Comprehensive studies on these Al-rich AlGaN epi-films and a typical AlGaN MQW are achieved with unique and significant results, which are useful to researchers in the field. Full article
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17 pages, 5669 KiB  
Article
Stacking Fault Nucleation in Films of Vertically Oriented Multiwall Carbon Nanotubes by Pyrolysis of Ferrocene and Dimethyl Ferrocene at a Low Vapor Flow Rate
by Ayoub Taallah, Shanling Wang, Omololu Odunmbaku, Lin Zhang, Xilong Guo, Yixin Dai, Wenkang Li, Huanqing Ye, Hansong Wu, Jiaxin Song, Jian Guo, Jiqiu Wen, Yi He and Filippo S. Boi
C 2024, 10(4), 91; https://doi.org/10.3390/c10040091 - 12 Oct 2024
Viewed by 1679
Abstract
Recent observations of superconductivity in low-dimensional systems composed of twisted, untwisted, or rhombohedral graphene have attracted significant attention. One-dimensional moiré superlattices and flat bands have interestingly been identified in collapsed chiral carbon nanotubes (CNTs), opening up new avenues for the tunability of the [...] Read more.
Recent observations of superconductivity in low-dimensional systems composed of twisted, untwisted, or rhombohedral graphene have attracted significant attention. One-dimensional moiré superlattices and flat bands have interestingly been identified in collapsed chiral carbon nanotubes (CNTs), opening up new avenues for the tunability of the electronic properties in these systems. The nucleation of hexagonal moiré superlattices and other types of stacking faults has also been demonstrated in partially collapsed and uncollapsed carbon nano-onions (CNOs). Here, we report a novel investigation on the dynamics of stacking fault nucleation within the multilayered lattices of micrometer-scale vertically oriented films of multiwall CNTs (MWCNTs), resulting from the pyrolysis of molecular precursors consisting of ferrocene or dimethyl ferrocene, at low vapor flow rates of ~5–20 mL/min. Interestingly, local nucleation of moiré-like superlattices (as stacking faults) was found when employing dimethyl ferrocene as the pyrolysis precursor. The morphological and structural properties of these systems were investigated with the aid of scanning and transmission electron microscopies, namely SEM, TEM, and HRTEM, as well as X-ray diffraction (XRD) and Raman point/mapping spectroscopy. Deconvolution analyses of the Raman spectra also demonstrated a local surface oxidation, possibly occurring on defect-rich interfaces, frequently identified within or in proximity of bamboo-like graphitic caps. By employing high-temperature Raman spectroscopy, we demonstrate a post-growth re-graphitization, which may also be visualized as an alternative way of depleting the oxygen content within the MWCNTs’ interfaces through recrystallization. Full article
(This article belongs to the Special Issue Characterization of Disorder in Carbons (2nd Edition))
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20 pages, 4351 KiB  
Article
Studying the Structure and Viscosity of MnO-SiO2-CaO-Al2O3-MgO Slag System
by Shokouh Haghdani, Merete Tangstad and Kristian Etienne Einarsrud
Materials 2024, 17(15), 3789; https://doi.org/10.3390/ma17153789 - 1 Aug 2024
Cited by 2 | Viewed by 1974
Abstract
The relationship between slag structure and viscosity is studied, employing Raman spectroscopy for the five-component slag system of MnO-SiO2-CaO-Al2O3-MgO and its subsystems. This study aims to investigate the influence of variations in slag composition on viscosity, which [...] Read more.
The relationship between slag structure and viscosity is studied, employing Raman spectroscopy for the five-component slag system of MnO-SiO2-CaO-Al2O3-MgO and its subsystems. This study aims to investigate the influence of variations in slag composition on viscosity, which is crucial for optimizing industrial processes. Based on industrial slag compositions produced in a silicomanganese submerged arc furnace, 17 slags with a fixed content of MnO of 10 wt% are synthesized with varying contents of SiO2 of 33 to 65 wt%; CaO within the range of 14 to 40 wt%; and fixed contents of Al2O3 and MgO of 17 and 6 wt%, respectively. The slag compositions are divided into four groups, ranging from low basicity (0.38) to high basicity (0.80), with each group containing the four slag systems of MnO-SiO2-CaO, MnO-SiO2-CaO-Al2O3, MnO-SiO2-CaO-MgO, and MnO-SiO2-CaO-Al2O3-MgO, with fixed basicity. Additionally, a five-component composition with the lowest basicity of 0.28 is considered. Raman spectroscopy measurements are performed in the wavenumber range of 200 to 1200 cm1 using a green source laser with a 532 nm wavelength. The high-wavenumber region of the Raman spectra (800 to 1200 cm1) is deconvoluted to quantitatively investigate the effect of each oxide on the slag structure and the degree of polymerization (DOP) of the silicate network. Results indicate that measured NBO/T increases with increasing basicity, demonstrating a reduction in DOP of the silicate structure. This depolymerization effect is more pronounced in slags containing Al2O3 compared to those without it. In a group of slags with similar basicity, the substitution of SiO2 with Al2O3 leads to further depolymerization. In contrast, substituting CaO with MgO has little effect on the silicate structure in slags without Al2O3 but causes depolymerization in slags containing Al2O3. To study the relationship between structure and viscosity, viscosity data obtained from FactSage are used as reference values. The predictions of slag viscosity using the Raman-structure model and the NBO/T viscosity model are then compared to the FactSage results. The adjustable parameters of the Raman-structure model are re-determined using the FactSage data for the studied slag compositions. The NBO/T viscosity model employs both calculated NBO/T values from the slag compositions and measured NBO/T values from the deconvolution results. The findings of this study reveal good agreement between the predictions of the Raman-structure model and the FactSage viscosity data. Full article
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21 pages, 3720 KiB  
Article
Raman Multi-Omic Snapshot and Statistical Validation of Structural Differences between Herpes Simplex Type I and Epstein–Barr Viruses
by Giuseppe Pezzotti, Eriko Ohgitani, Hayata Imamura, Saki Ikegami, Masaharu Shin-Ya, Tetsuya Adachi, Keiji Adachi, Toshiro Yamamoto, Narisato Kanamura, Elia Marin, Wenliang Zhu, Koichiro Higasa, Yoshiki Yasukochi, Kazu Okuma and Osam Mazda
Int. J. Mol. Sci. 2023, 24(21), 15567; https://doi.org/10.3390/ijms242115567 - 25 Oct 2023
Cited by 4 | Viewed by 2233
Abstract
Raman spectroscopy was applied to study the structural differences between herpes simplex virus Type I (HSV-1) and Epstein–Barr virus (EBV). Raman spectra were first collected with statistical validity on clusters of the respective virions and analyzed according to principal component analysis (PCA). Then, [...] Read more.
Raman spectroscopy was applied to study the structural differences between herpes simplex virus Type I (HSV-1) and Epstein–Barr virus (EBV). Raman spectra were first collected with statistical validity on clusters of the respective virions and analyzed according to principal component analysis (PCA). Then, average spectra were computed and a machine-learning approach applied to deconvolute them into sub-band components in order to perform comparative analyses. The Raman results revealed marked structural differences between the two viral strains, which could mainly be traced back to the massive presence of carbohydrates in the glycoproteins of EBV virions. Clear differences could also be recorded for selected tyrosine and tryptophan Raman bands sensitive to pH at the virion/environment interface. According to the observed spectral differences, Raman signatures of known biomolecules were interpreted to link structural differences with the viral functions of the two strains. The present study confirms the unique ability of Raman spectroscopy for answering structural questions at the molecular level in virology and, despite the structural complexity of viral structures, its capacity to readily and reliably differentiate between different virus types and strains. Full article
(This article belongs to the Section Physical Chemistry and Chemical Physics)
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19 pages, 8972 KiB  
Article
Judd–Ofelt Analysis and Spectroscopy Study of Tellurite Glasses Doped with Rare-Earth (Nd3+, Sm3+, Dy3+, and Er3+)
by Naziha Boudchicha, Mostepha Iezid, Faycal Goumeidane, Messaoud Legouera, P. Syam Prasad and P. Venkateswara Rao
Materials 2023, 16(21), 6832; https://doi.org/10.3390/ma16216832 - 24 Oct 2023
Cited by 9 | Viewed by 2018
Abstract
A series of glasses based on (80-y) TeO2-20 BiCl3-y RE2O3 (y = 0, 0.6 mol%; RE = Nd, Sm, Dy, and Er) were prepared. The thermal stability of the glass was determined by differential scanning calorimetry [...] Read more.
A series of glasses based on (80-y) TeO2-20 BiCl3-y RE2O3 (y = 0, 0.6 mol%; RE = Nd, Sm, Dy, and Er) were prepared. The thermal stability of the glass was determined by differential scanning calorimetry (DSC). The density and optical energy values of the prepared glass increased in the order of Sm2O3, Nd2O3, Dy2O3, and Er2O3. In addition, the glass doped with Er2O3 had the highest refractive index values compared to the other samples. Subsequently, Judd–Ofelt parameters (Ω2, Ω4, and Ω6) were obtained for the family of RE3+ trivalent rare-earth ions introduced as dopants in a tellurite glass. These parameters were calculated from the absorption spectra for each RE3+. The structures were studied by Raman spectroscopy deconvolution, which determined that TeO4, TeO3, TeO3+1, BiO6, and BiCl6 units had formed. In addition, the structural changes in the glass are related to the intensity ratio of TeO4/TeO3, depending on the type of rare-earth. For the optics and Judd–Ofelt parameters, the ray spectroscopy results of the prepared glass show that it is a good candidate for nonlinear optics fibers, a solid laser material. Full article
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20 pages, 3751 KiB  
Article
Molecular Mechanism of the Piezoelectric Response in the β-Phase PVDF Crystals Interpreted by Periodic Boundary Conditions DFT Calculations
by Gianluca Serra, Alessia Arrigoni, Mirella Del Zoppo, Chiara Castiglioni and Matteo Tommasini
Materials 2023, 16(17), 6004; https://doi.org/10.3390/ma16176004 - 31 Aug 2023
Cited by 8 | Viewed by 2025
Abstract
A theoretical approach based on Periodic Boundary Conditions (PBC) and a Linear Combination of Atomic Orbitals (LCAO) in the framework of the density functional theory (DFT) is used to investigate the molecular mechanism that rules the piezoelectric behavior of poly(vinylidene fluoride) (PVDF) polymer [...] Read more.
A theoretical approach based on Periodic Boundary Conditions (PBC) and a Linear Combination of Atomic Orbitals (LCAO) in the framework of the density functional theory (DFT) is used to investigate the molecular mechanism that rules the piezoelectric behavior of poly(vinylidene fluoride) (PVDF) polymer in the crystalline β-phase. We present several computational tests highlighting the peculiar electrostatic potential energy landscape the polymer chains feel when they change their orientation by a rigid rotation in the lattice cell. We demonstrate that a rotation of the permanent dipole through chain rotation has a rather low energy cost and leads to a lattice relaxation. This justifies the macroscopic strain observed when the material is subjected to an electric field. Moreover, we investigate the effect on the molecular geometry of the expansion of the lattice parameters in the (a, b) plane, proving that the rotation of the dipole can take place spontaneously under mechanical deformation. By band deconvolution of the IR and Raman spectra of a PVDF film with a high content of β-phase, we provide the experimental phonon wavenumbers and relative band intensities, which we compare against the predictions from DFT calculations. This analysis shows the reliability of the LCAO approach, as implemented in the CRYSTAL software, for calculating the vibrational spectra. Finally, we investigate how the IR/Raman spectra evolve as a function of inter-chain distance, moving towards the isolated chain limit and to the limit of a single crystal slab. The results show the relevance of the inter-molecular interactions on the vibrational dynamics and on the electro-optical features ruling the intensity pattern of the vibrational spectra. Full article
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20 pages, 5727 KiB  
Article
Spectral Features Differentiate Aging-Induced Changes in Parchment—A Combined Approach of UV/VIS, µ-ATR/FTIR and µ-Raman Spectroscopy with Multivariate Data Analysis
by Antonia Malissa, Federica Cappa, Manfred Schreiner and Martina Marchetti-Deschmann
Molecules 2023, 28(12), 4584; https://doi.org/10.3390/molecules28124584 - 6 Jun 2023
Cited by 8 | Viewed by 2667
Abstract
From the moment of production, artworks are constantly exposed to changing environmental factors potentially inducing degradation. Therefore, detailed knowledge of natural degradation phenomena is essential for proper damage assessment and preservation. With special focus on written cultural heritage, we present a study on [...] Read more.
From the moment of production, artworks are constantly exposed to changing environmental factors potentially inducing degradation. Therefore, detailed knowledge of natural degradation phenomena is essential for proper damage assessment and preservation. With special focus on written cultural heritage, we present a study on the degradation of sheep parchment employing accelerated aging with light (295–3000 nm) for one month, 30/50/80% relative humidity (RH) and 50 ppm sulfur dioxide with 30/50/80%RH for one week. UV/VIS spectroscopy detected changes in the sample surface appearance, showing browning after light-aging and increased brightness after SO2-aging. Band deconvolution of ATR/FTIR and Raman spectra and factor analysis of mixed data (FAMD) revealed characteristic changes of the main parchment components. Spectral features for degradation-induced structural changes of collagen and lipids turned out to be different for the employed aging parameters. All aging conditions induced denaturation (of different degrees) indicated by changes in the secondary structure of collagen. Light treatment resulted in the most pronounced changes for collagen fibrils in addition to backbone cleavage and side chain oxidations. Additional increased disorder for lipids was observed. Despite shorter exposure times, SO2-aging led to a weakening of protein structures induced by transitions of stabilizing disulfide bonds and side chain oxidations. Full article
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19 pages, 6926 KiB  
Article
Raman and Infrared Spectroscopy of Barium-Gallo Germanate Glasses Containing B2O3/TiO2
by Karolina Kowalska, Marta Kuwik, Joanna Pisarska, Maciej Sitarz and Wojciech A. Pisarski
Materials 2023, 16(4), 1516; https://doi.org/10.3390/ma16041516 - 11 Feb 2023
Cited by 6 | Viewed by 2389
Abstract
Modified barium gallo-germanate glass hosts are still worthy of attention in studying structure–property relationships. In this work, two different series of glass systems based on (60-x)GeO2-xTiO2-30BaO-10Ga2O3 and (60-x)GeO2-xB2O3-30BaO-10Ga2O [...] Read more.
Modified barium gallo-germanate glass hosts are still worthy of attention in studying structure–property relationships. In this work, two different series of glass systems based on (60-x)GeO2-xTiO2-30BaO-10Ga2O3 and (60-x)GeO2-xB2O3-30BaO-10Ga2O3 (x = 10, 30, 50 mol%) were synthesized, and their properties were studied using spectroscopic techniques. X-ray diffraction (XRD) patterns revealed that all fabricated glasses were fully amorphous material. The absorption edge shifted toward the longer wavelengths with a gradual substitution of GeO2. The spectroscopic assignments of titanium ions were performed with excitation and emission spectra compared to the additional sample containing an extremely low content of TiO2 (0.005 mol%). On the basis of Raman and FT-IR investigations, it was found that increasing the TiO2 content caused a destructive effect on the GeO4 and GeO6 structural units. The Raman spectra of a sample containing a predominantly TiO2 (50 mol%) proved that the band was located near 650 cm−1, which corresponded to the stretching vibration of Ti-O in TiO6 unit. The deconvoluted IR results showed that the germanate glass network consisted of the coexistence of two BO3 and BO4 structural groups. Based on the experimental investigations, we concluded that the developed materials are a promising candidate for use as novel glass host matrices for doping rare-earth and/or transition metal ions. Full article
(This article belongs to the Special Issue Fabrications and Characterization of Different Glasses Systems)
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28 pages, 6030 KiB  
Article
Development of Tailored Graphene Nanoparticles: Preparation, Sorting and Structure Assessment by Complementary Techniques
by Kaiyue Hu, Luigi Brambilla, Patrizia Sartori, Claudia Moscheni, Cristiana Perrotta, Lucia Zema, Chiara Bertarelli and Chiara Castiglioni
Molecules 2023, 28(2), 565; https://doi.org/10.3390/molecules28020565 - 5 Jan 2023
Cited by 9 | Viewed by 2733
Abstract
We present a thorough structural characterization of Graphene Nano Particles (GNPs) prepared by means of physical procedures, i.e., ball milling and ultra-sonication of high-purity synthetic graphite. UV-vis absorption/extinction spectroscopy, Dynamic Light Scattering, Transmission Electron Microscopy, IR and Raman spectroscopies were performed. Particles with [...] Read more.
We present a thorough structural characterization of Graphene Nano Particles (GNPs) prepared by means of physical procedures, i.e., ball milling and ultra-sonication of high-purity synthetic graphite. UV-vis absorption/extinction spectroscopy, Dynamic Light Scattering, Transmission Electron Microscopy, IR and Raman spectroscopies were performed. Particles with small size were obtained, with an average lateral size <L> = 70–120 nm, formed by few <N> = 1–10 stacked layers, and with a small number of carboxylic groups on the edges. GNPs relatively more functionalized were separated by centrifugation, which formed stable water dispersions without the need for any surfactant. A critical reading and unified interpretation of a wide set of spectroscopic data was provided, which demonstrated the potential of Specular Reflectance Infrared Spectroscopy for the diagnosis and quantification of chemical functionalization of GNPs. Raman parameters commonly adopted for the characterization of graphitic materials do not always follow a monotonic trend, e.g., with the particle size and shape, thus unveiling some limitations of the available spectroscopic metrics. This issue was overcome thanks to a comparative spectra analysis, including spectra deconvolution by means of curve fitting procedures, experiments on reference materials and the exploitation of complementary characterization techniques. Full article
(This article belongs to the Special Issue Materials Chemistry in Italy)
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31 pages, 73261 KiB  
Article
Raman Metabolomics of Candida auris Clades: Profiling and Barcode Identification
by Giuseppe Pezzotti, Miyuki Kobara, Tamaki Nakaya, Hayata Imamura, Tomoya Fujii, Nao Miyamoto, Tetsuya Adachi, Toshiro Yamamoto, Narisato Kanamura, Eriko Ohgitani, Elia Marin, Wenliang Zhu, Toshihisa Kawai, Osam Mazda, Tetsuo Nakata and Koichi Makimura
Int. J. Mol. Sci. 2022, 23(19), 11736; https://doi.org/10.3390/ijms231911736 - 3 Oct 2022
Cited by 20 | Viewed by 3256
Abstract
This study targets on-site/real-time taxonomic identification and metabolic profiling of seven different Candida auris clades/subclades by means of Raman spectroscopy and imaging. Representative Raman spectra from different Candida auris samples were systematically deconvoluted by means of a customized machine-learning algorithm linked to a [...] Read more.
This study targets on-site/real-time taxonomic identification and metabolic profiling of seven different Candida auris clades/subclades by means of Raman spectroscopy and imaging. Representative Raman spectra from different Candida auris samples were systematically deconvoluted by means of a customized machine-learning algorithm linked to a Raman database in order to decode structural differences at the molecular scale. Raman analyses of metabolites revealed clear differences in cell walls and membrane structure among clades/subclades. Such differences are key in maintaining the integrity and physical strength of the cell walls in the dynamic response to external stress and drugs. It was found that Candida cells use the glucan structure of the extracellular matrix, the degree of α-chitin crystallinity, and the concentration of hydrogen bonds between its antiparallel chains to tailor cell walls’ flexibility. Besides being an effective ploy in survivorship by providing stiff shields in the α–1,3–glucan polymorph, the α–1,3–glycosidic linkages are also water-insoluble, thus forming a rigid and hydrophobic scaffold surrounded by a matrix of pliable and hydrated β–glucans. Raman analysis revealed a variety of strategies by different clades to balance stiffness, hydrophobicity, and impermeability in their cell walls. The selected strategies lead to differences in resistance toward specific environmental stresses of cationic/osmotic, oxidative, and nitrosative origins. A statistical validation based on principal component analysis was found only partially capable of distinguishing among Raman spectra of clades and subclades. Raman barcoding based on an algorithm converting spectrally deconvoluted Raman sub-bands into barcodes allowed for circumventing any speciation deficiency. Empowered by barcoding bioinformatics, Raman analyses, which are fast and require no sample preparation, allow on-site speciation and real-time selection of appropriate treatments. Full article
(This article belongs to the Section Molecular Microbiology)
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16 pages, 2626 KiB  
Article
Oil Palm Fruits Ripeness Classification Based on the Characteristics of Protein, Lipid, Carotene, and Guanine/Cytosine from the Raman Spectra
by Gabriel Tan Hong Tzuan, Fazida Hanim Hashim, Thinal Raj, Aqilah Baseri Huddin and Mohd Shaiful Sajab
Plants 2022, 11(15), 1936; https://doi.org/10.3390/plants11151936 - 26 Jul 2022
Cited by 12 | Viewed by 3421
Abstract
The capacity of palm oil production is directly affected by the ripeness of the fresh fruit bunches (FFB) upon harvesting. Conventional harvesting standards rely on rigid harvesting scheduling as well as the number of fruitlets that have loosened from the bunch. Harvesting is [...] Read more.
The capacity of palm oil production is directly affected by the ripeness of the fresh fruit bunches (FFB) upon harvesting. Conventional harvesting standards rely on rigid harvesting scheduling as well as the number of fruitlets that have loosened from the bunch. Harvesting is usually done every 10 to 14 days, and an FFB is deemed ready to be harvested if there are around 5 to 10 empty sockets on the fruit bunch. Technology aided by imaging techniques relies heavily on the color of the fruit bunch, which is highly dependent on the surrounding light intensities. In this study, Raman spectroscopy is used for ripeness classification of oil palm fruits, based on the molecular assignments extracted from the Raman bands between 1240 cm−1 and 1360 cm−1. The Raman spectra of 52 oil palm fruit samples which contain the fingerprints of different organic compounds were collected. Signal processing was applied to perform baseline correction and to reduce background noises. Characteristic data of the organic compounds were extracted through deconvolution and curve fitting processes. Subsequently, a correlation study between organic compounds was developed and eight hidden Raman peaks including protein, beta carotene, carotene, lipid, guanine/cytosine, chlorophyll-a, and tryptophan were successfully located. Through ANOVA statistical analysis, a total of six peak intensities from proteins through Amide III (β-sheet), beta-carotene, carotene, lipid, guanine/cytosine, and carotene and one peak location from lipid were found to be significant. An automated oil palm fruit ripeness classification system deployed with artificial neural network (ANN) using the seven signification features showed an overall performance of 97.9% accuracy. An efficient and accurate ripeness classification model which uses seven significant Raman peak features from the correlation analysis between organic compounds was successfully developed. Full article
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26 pages, 8690 KiB  
Article
Raman Spectroscopy of Oral Candida Species: Molecular-Scale Analyses, Chemometrics, and Barcode Identification
by Giuseppe Pezzotti, Miyuki Kobara, Tamaki Nakaya, Hayata Imamura, Nao Miyamoto, Tetsuya Adachi, Toshiro Yamamoto, Narisato Kanamura, Eriko Ohgitani, Elia Marin, Wenliang Zhu, Ichiro Nishimura, Osam Mazda, Tetsuo Nakata and Koichi Makimura
Int. J. Mol. Sci. 2022, 23(10), 5359; https://doi.org/10.3390/ijms23105359 - 11 May 2022
Cited by 25 | Viewed by 6999
Abstract
Oral candidiasis, a common opportunistic infection of the oral cavity, is mainly caused by the following four Candida species (in decreasing incidence rate): Candida albicans, Candida glabrata, Candida tropicalis, and Candida krusei. This study offers in-depth Raman spectroscopy analyses [...] Read more.
Oral candidiasis, a common opportunistic infection of the oral cavity, is mainly caused by the following four Candida species (in decreasing incidence rate): Candida albicans, Candida glabrata, Candida tropicalis, and Candida krusei. This study offers in-depth Raman spectroscopy analyses of these species and proposes procedures for an accurate and rapid identification of oral yeast species. We first obtained average spectra for different Candida species and systematically analyzed them in order to decode structural differences among species at the molecular scale. Then, we searched for a statistical validation through a chemometric method based on principal component analysis (PCA). This method was found only partially capable to mechanistically distinguish among Candida species. We thus proposed a new Raman barcoding approach based on an algorithm that converts spectrally deconvoluted Raman sub-bands into barcodes. Barcode-assisted Raman analyses could enable on-site identification in nearly real-time, thus implementing preventive oral control, enabling prompt selection of the most effective drug, and increasing the probability to interrupt disease transmission. Full article
(This article belongs to the Section Molecular Microbiology)
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12 pages, 1918 KiB  
Article
MicroRaman Study of Nanostructured Ultra-Thin AlGaN/GaN Thin Films Grown on Hybrid Compliant SiC/Por-Si Substrates
by Aleksandr Lenshin, Pavel Seredin, Dmitry Goloshchapov, Ali O. Radam and Andrey Mizerov
Coatings 2022, 12(5), 626; https://doi.org/10.3390/coatings12050626 - 3 May 2022
Cited by 3 | Viewed by 2203
Abstract
In our study, for the first time we demonstrate the advantages of using a compliant hybrid substrate of porSi/SiC to grow high-quality ultra-thin nanostructured AlxGa1−xN/GaN heterostructures using molecular beam epitaxy with plasma-activated nitrogen. Comparison of our experimental results [...] Read more.
In our study, for the first time we demonstrate the advantages of using a compliant hybrid substrate of porSi/SiC to grow high-quality ultra-thin nanostructured AlxGa1−xN/GaN heterostructures using molecular beam epitaxy with plasma-activated nitrogen. Comparison of our experimental results obtained by micro-Raman spectroscopy, deconvolution, and the fitting of the experimental Raman spectra and subsequent calculations with information from already established literature sources show that the use of such a hybrid SiC/porSi substrate has a number of undeniable advantages for the growth of ultra-thin AlxGa1−xN/GaN nanoheterostructures without requiring the use of thick AIIIN buffer layers. Direct growth on a hybrid compliant substrate of SiC/porSi leads to a substantial relaxation in the elastic stresses between the epitaxial film, porous silicon, and silicon carbide, which consequently affects the structural quality of the ultra-thin AlxGa1−xN/GaN epitaxial layers. The experimental and computational data obtained in our work are important for understanding the physics and technology of AlxGa1−xN/GaN nanoheterostructures and will contribute to their potential applications in optoelectronics. Full article
(This article belongs to the Special Issue Recent Progress in Surface and Interface Properties of Nanostructures)
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9 pages, 2370 KiB  
Article
Spectroscopic and Surface Crystallization Characterizations of Yttrium-Doped Phosphate Glasses
by Haijian Li, Hao Zou, Zhihua Sun, Yi Xu, Changjian Wang, Xiao Xie, Jianhua Yi and Fengqi Zhao
Crystals 2022, 12(1), 109; https://doi.org/10.3390/cryst12010109 - 14 Jan 2022
Cited by 6 | Viewed by 2446
Abstract
The composition, structure, and thermal behaviors of yttrium-containing phosphate glasses were studied in this work, and the glass-ceramics were prepared via the two-step crystallization method. The XRD and SEM-EDS results show the forming range of the phosphate glass system and the formation of [...] Read more.
The composition, structure, and thermal behaviors of yttrium-containing phosphate glasses were studied in this work, and the glass-ceramics were prepared via the two-step crystallization method. The XRD and SEM-EDS results show the forming range of the phosphate glass system and the formation of YPO4 (xenotime) due to the addition of excessive Y2O3. The spectroscopic characterization of these glasses presented shifts of the infrared and Raman bands, demonstrating the depolymerization of the glass network and the formation of novel P–O–Y bonds, and the deconvoluted Raman spectra also exhibited the occurrence of the disproportionation reaction in the glass melting process. The content of non-bridging oxygen (NBOs) from the UV–vis spectra first increased and then decreased with increasing Y2O3. The thermal behaviors show that the Y2O3 reduced the crystallization peak temperature and the thermal stability of the glasses. The crystalline behaviors of the phosphate glass matrix were investigated at different crystallization times of 2–10 h, and a transformation of the crystallization mechanism from surface to volume crystallization was found. The yttrium phosphate glass-ceramics crystallized for 10 h exhibited transformation of the main crystalline phases with increasing Y2O3, and the grain-oriented crystalline surface became irregular. Full article
(This article belongs to the Section Inorganic Crystalline Materials)
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