Search Results (10,474)

Severe southern soybean crinkle leaf disease (SSCLD) reduces soybean seed yield by approximately 40%. Identifying the genes that control SSCLD is crucial for breeding resistant varieties and elucidating the molecular mechanisms underlying SSCLD infection. In this study, recombinant inbred lines (RILs, n = 236) derived from a cross between Nannong1138-2 (NN1138-2) and Zhengxiaodou (ZXD) were used as experimental materials. A field trial employing a randomized block design was conducted in four environments across two locations, Nanning (2019–2021) and Du’an (2020) in Guangxi, to identify the disease severity grades of SSCLD in the field. QTLs controlling SSCLD were detected via a genetic map constructed using 3255 SLAF (specific locus amplified fragment) markers from the recombinant inbred lines. RT‒qPCR was used to analyze candidate gene expression at major effect loci. The results revealed that eight SSCLD-associated QTLs were identified on chromosomes 3, 6, 12, and 17. Notably, the qw12-1 locus on chromosome 12 was detected across three developmental stages in three of the four environments, explaining 10.18–58.20% of the phenotypic variation. RT‒qPCR analysis of 12 disease resistance-related genes within the qw12-1 interval revealed that GLYMA_12G233000 and GLYMA_12G239200 presented significantly higher expression in crinkled leaf lines than in normal leaf lines during the V5 (fifth trifoliolate stage), R2 (full bloom stage), and R6 (full seed stage) stages. These genes were prioritized as potential prime candidates for SSCLD resistance genes. This research provides foundational data for the fine mapping of qw12-1 and cloning SSCLD-related genes, advancing our understanding of the molecular mechanisms underlying SSCLD. Full article

Background: Tumor cells can reprogram their metabolism, constituting a hallmark of cancer that plays a crucial role in tumor progression. As tumor cells exhibit an increased demand for nutrients, e.g., amino acids, they rely on extracellular sources and show deregulation of transport proteins. Among these, SNAT1 (SLC38A1) is described as the loader for glutamine that is responsible for the main influx of this amino acid. The aim of this study was to assess the molecular function of SNAT1 in melanoma regarding its role in amino acid transport and regulation of cellular metabolism. Methods: siPool-mediated downregulation of SNAT1 expression in melanoma cell lines was used to investigate the molecular function of this protein. Glutamine transport was assessed by measuring the intracellular and extracellular concentrations of glutamine. Regulation of downstream effectors was evaluated with qRT-PCR and Western Blot. Metabolism was investigated by performing Seahorse flux analysis. Mitochondrial staining was examined via flow cytometry. Protein interaction was assessed with Co-IP, and in silico modeling of protein interaction was performed with AlphaFold3. Results: In this study, we uncovered the new finding that SNAT1 is not primarily implicated in glutamine influx into melanoma cells but in signaling in response to extracellular glutamine. We identified P62 and cMYC as downstream effectors of SNAT1. By activating the P62/cMYC-axis and target genes of cMYC, SNAT1 modulates the metabolism of melanoma cells depending on the glutamine level. SNAT1 and P62 are interaction partners. Conclusions: This finding newly suggests that SNAT1 may function as a sensor or receptor (“transceptor”) for glutamine rather than being a direct and primary glutamine transporter, and could open up new therapeutic options targeting melanoma cells. Full article

The potato tuber is a metamorphic organ formed by the expansion of the underground stolon tip. It is an economically important organ and an excellent material for studying the occurrence and development of modified plant organs. However, genetic studies have lagged due to the potato’s complex genetic background. In this study, we used stolons and tubers of the potato ‘Qingshu 9’ at different stages of the tuberization process as samples for transcriptome sequencing and systematically analyzed the transcriptome characteristics of tuberization. Through RT-qPCR analysis, 16 candidate genes related to tuberization were identified. Overexpression verification was performed on one candidate gene, StLSH10, and the results indicated that it might be involved in regulating tuberization. This research provides a theoretical basis for elucidating the molecular mechanism of tuberization and offers a new target to improve potato yield and quality through molecular breeding strategies. Full article

Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) poses a serious threat to the swine industry in China. As a major pig-producing province, Shandong requires continuous epidemiological monitoring of PRRSV. To elucidate the molecular epidemiology of the virus, 1621 clinical samples were collected from suspected cases across different regions of Shandong Province between 2023 and 2025, primarily from Tai’an, Linyi, Jining, and Liaocheng. RT-qPCR detection showed that the positive rate for PRRSV-2 was 20.05% (325/1621). Genetic analysis based on ORF5 and NSP2 genes indicated that Sublineage L1C (NADC30-like) was the dominant strain for 38.38% of ORF5 gene and 72.73% of NSP2 sequencing results. This was followed by Sublineage L8E and L1A and L5A strains. Key virulence-related mutations were identified at residues R13 and R151 in the GP5 protein, which are associated with enhanced pathogenicity. Additionally, variations in neutralizing epitope and the number of N-glycosylation sites (ranging from 2 to 5 per strain) suggested potential immune evasion. Notably, 26.79% (15/56) of sequenced samples showed discordant ORF5 and NSP2 genotyping results, indicating widespread recombination among PRRSV strains in Shandong Province. These finding demonstrated that the genetic diversity, high recombination frequency, and key amino acid variations in circulating PRRSV strains collectively undermine vaccine effectiveness. This study highlights the need to optimize vaccination strategies, enhance biosecurity measures, and implement effective disease control and elimination programs to reduce the impact of PRRSV in Shandong Province. Full article

Background/Objectives: Ovarian cancer is the most lethal gynecologic malignancy, largely due to late diagnosis and the high prevalence of malignant ascites, a hallmark of advanced disease that is difficult to control and contributes to immune suppression and treatment failure. Despite advances in standard care, durable responses are rare. This study investigates a novel immunotherapeutic strategy designed to overcome the suppressed peritoneal microenvironment using an oncolytic vaccinia virus engineered to express a decoy-resistant IL-18 mutein. Methods: We generated a vaccinia virus (vvDD-nsmDR-18) expressing a non-secreted, mature, decoy-resistant IL-18. Viral expression was validated via RT-qPCR and fluorescence microscopy, while cytotoxicity was confirmed using CCK-8 assays. The antitumor efficacy of vvDD-nsmDR-18 was evaluated in the aggressive murine ID8a ovarian cancer model. The underlying mechanisms of action were investigated using flow cytometry and transcriptional profiling. Results: Treatment with vvDD-nsmDR-18 significantly prolonged survival and was associated with reduced abdominal distension consistent with decreased ascites burden. Immune analyses indicated enhanced T cell activation across multiple anatomical compartments, including tumors, peritoneal cavity, and spleens, the latter recently suggested to serve as a reservoir for tumor-reactive T cells. This systemic activation was characterized by increased IFN-γ and perforin expression. In addition, vvDD-nsmDR-18 treatment was associated with expansion of CD39⁺CD103⁺CD8⁺ tumor-reactive T cells and a shift toward a lower PD-1 expression phenotype within this population. Conclusions: These findings demonstrate that nsmDR-18-expressing oncolytic viruses can remodel the immunosuppressive landscape of advanced ovarian cancer, suggesting this approach is a promising candidate for further clinical development. Full article

Atractylodes macrocephala (A.M.) is a traditional Chinese medicinal and edible herb renowned for its spleen-tonifying, dampness-resolving, diuretic, and antiperspirant properties. Its primary bioactive constituents are terpenoids, which have demonstrated anti-inflammatory, antitumor, and immunomodulatory activities. However, transcriptomic studies focusing on terpenoid biosynthesis in A.M. from different geographical origins remain limited. To investigate the molecular mechanisms underlying differential sesquiterpenoid production, we performed transcriptome sequencing on samples collected from four distinct regions in China. Sesquiterpenoid biosynthesis predominantly proceeds through the mevalonate (MVA) and methylerythritol phosphate (MEP) pathways. Comparative analysis revealed four key enzyme-encoding genes—HMGCR, ISPF, GCPE, and FDPS—whose differential expression patterns were further validated by quantitative real-time PCR (qRT-PCR). Samples from Shaanxi exhibited the highest upregulation of biosynthetic genes and the greatest enrichment of terpene-related metabolites, suggesting enhanced pharmacological potential. In contrast, samples from Fujian, Anhui, and Hebei displayed relatively lower activity, with only FDPS upregulated in the Hebei sample. High-performance liquid chromatography (HPLC) quantification confirmed regional differences in the levels of major terpenoids—including atractylodin, atractylenolide I, and atractylenolide III—which correlated well with the observed gene expression profiles. This study compared conspecific A.M. from different geographical regions and further revealed that the variation in terpenoid metabolites is closely related to environmental factors. These findings provide a theoretical basis for the further discovery of functional genes and offer important implications for the quality control of A.M. Full article

The application of dual cytokinins can significantly enhance shoot multiplication rates in specific apple cultivars compared to standard protocols using a single cytokinin. This study presents a comprehensive analysis of shoot multiplication parameters and the underlying transcriptomic response of two distinct apple scion cultivars, cvs. Húsvéti rozmaring and McIntosh, to the simultaneous application of two cytokinins (BA and KIN). Morphological parameters were recorded, followed by comparative RNA-seq analysis and RT-qPCR validation. Our results demonstrate that the BA+KIN treatment induces a unique transcriptomic signature in both cultivars, which cannot be explained by a simple dose–response effect. In cv. McIntosh, 76% of the DEGs were uniquely regulated by the combination, while in cv. Húsvéti rozmaring, although the overlap with single treatments was higher, 17% of the DEGs (representing 1218 genes) were still exclusively activated by the BA+KIN treatment. The fact that the combined treatment recruits specific gene sets and metabolic pathways that remain silent under single BA or KIN applications—regardless of the cultivar—strongly supports a synergistic or non-additive hormonal interaction rather than a response to increased total cytokinin concentration. The dual treatment revealed 3209 DEGs in the inter-cultivar comparison, reflecting distinct strategies: cv. Húsvéti rozmaring achieved high efficiency growth by down-regulating internal hormones, whereas cv. McIntosh exploited intense auxin signaling and hormonal plasticity to maximize bud release. These results prove that distinct molecular pathways can lead to peak performance depending on the apple cultivar. Full article

Primula vulgaris possesses considerable edible, medicinal, and ornamental value. It is widely applied in food and pharmaceutical development and, as an early-spring flowering plant, is used in landscaping. However, its range of applications and scope are significantly limited due to its inability to withstand high temperatures. This study aimed to investigate the heat tolerance of P. vulgaris under natural high temperatures during summer, identify the most heat-resistant varieties, and determine the optimal conditions for summer outdoor cultivation. Eight P. vulgaris varieties were selected and placed under forest shade with three different shading rates during the summer high-temperature period. Additionally, the heat damage index and the following six physiological indicators were measured: malondialdehyde (MDA) content, superoxide dismutase (SOD) activity, peroxidase (POD) activity, soluble sugar content, soluble protein content, and relative conductivity. Furthermore, a correlation analysis of the physiological indicators was conducted, and a heat tolerance evaluation was performed using the membership function method. Simultaneously, qRT-PCR was employed to analyze the expression patterns of three heat stress-related genes (PvHSP70, PvNCED6, and PvHSF24) across the different cultivars and experimental sites. Under heat stress conditions, leaf area was found to be positively and highly significantly correlated with stomatal density (p < 0.01). The heat damage index, MDA content, and relative conductivity increased significantly with prolonged stress, and they showed highly significant positive correlations. SOD activity, soluble sugar content, and soluble protein content increased to resist heat damage, while POD activity exhibited no consistent trend. Highly significant positive correlations were observed among protective enzyme activities and osmotic regulatory substances. After a comprehensive evaluation, the eight varieties were ranked according to heat tolerance as follows: “Early Punas Yellow” > “Danova Red” > “Middle Punas Rose Red” > “Middle Punas Blue” > “Middle Punas Red” > “Danova Rose White” > “Middle Punas Crimson” > “Middle Punas Scarlet”. Conclusions: “Early Punas Yellow”, “Danova Red”, and “Middle Punas Rose Red” demonstrated strong heat tolerance. In addition, the expression of PvHSP70 and PvHSF24 was significantly upregulated in heat-tolerant cultivars, while that of PvNCED6 showed a sustained increasing trend with rising temperatures. The results of a three-way ANOVA suggested that P. vulgaris exhibited different regulatory patterns among various traits under natural high-temperature stress. Morphological and integrative damage-related indicators, including leaf area, stomatal density, and the heat damage index, all presented significant “site × time” interaction effects. Meanwhile, some physiological regulatory indicators displayed more complex and inconsistent response patterns. These findings further confirm that a dense forest understory grassland is an ideal environment for the summer outdoor cultivation of P. vulgaris. Full article

Bcakground: Hepatocellular carcinoma (HCC) is a prevalent malignancy with limited therapeutic options. Drug repurposing offers an attractive strategy to accelerate anticancer discovery. The pleuromutilin class of antibiotics, including the human-approved agent lefamulin and the veterinary drug tiamulin, has shown preliminary anticancer potential, but its efficacy and mechanism in HCC remain unexplored. Methods: The anti-tumor effects of lefamulin and tiamulin were evaluated in HCC cell lines, patient-derived organoids, and a C57BL/6 mouse subcutaneous tumor model. Safety was assessed in a human normal hepatocyte cell line and by histopathological examination of major organs in treated mice. Mechanistic investigations were performed using RNA-sequencing, RT-qPCR, immunohistochemistry (IHC), filipin staining, pharmacological rescue assays, and shRNA-mediated gene silencing. Results: In this study, we found that both lefamulin and tiamulin markedly inhibited HCC cell proliferation in vitro and significantly suppressed tumor growth in vivo (lefamulin vs. control, p = 0.014; tiamulin vs. control, p = 0.021), without causing significant toxicity. RNA-sequencing analysis revealed consistent downregulation of the cholesterol transporter Abca1 (ATP-binding cassette transporter A1) and alterations in cell adhesion molecule pathways. Functional studies confirmed that treatment reduced ABCA1 protein levels, leading to intracellular cholesterol accumulation and aberrant distribution. Furthermore, treated tumors exhibited a significant increase in CD8⁺ T-cell infiltration, with CD4⁺ T cells and macrophage infiltration remained unchanged, indicating a specific modulation of the tumor immune microenvironment. Conclusions: These findings suggest that lefamulin and tiamulin are promising therapeutic candidates for HCC. Full article

Cinnamoyl-CoA reductase (CCR) is the first rate-limiting enzyme in the lignin biosynthetic pathway in higher plants. It catalyzes the conversion of cinnamoyl-CoA into the corresponding cinnamaldehydes. Tea plant (Camellia sinensis) is a perennial woody species. Systematic identification and functional characterization of the CCR gene family in tea plants is still limited. In this study, 202 CCR genes were identified from six tea plant cultivars, and a significant expansion of the CCR gene family was observed during the domestication process from wild to cultivated tea plants. A total of 50 CsCCR genes were identified in the tea cultivar ‘Shuchazao’, and they were distributed across 13 chromosomes. Multiple sequence alignment revealed that the key catalytic motifs NWYCYGK and H-X-X-K were fully conserved in CsCCR1, CsCCR2, and CsCCR3. Phylogenetic analysis showed that CsCCR1/2/3 clustered with AtCCR1/2 and PtrCCR2, which were known to be involved in lignin biosynthesis. Transcriptome data analysis showed that CsCCR3 exhibited significantly higher transcript abundance in stems than in young, mature, and old leaves. CsCCRL9, CsCCRL33, CsCCRL34, and CsCCRL36 also showed relatively high expression levels in stem. RT-qPCR further confirmed the high expression of CsCCR3 and CsCCRL33 in stems. Furthermore, comparison of CCR members derived from tandem and segmental duplication in the tea cultivar ‘Shuchazao’ showed clear differences in Ka/Ks ratios, expression correlations, and the distribution of stress-responsive cis-acting elements. This study provides new insights into the expansion and duplication-related functional divergence of the CCR gene family in tea plant and identifies key candidate genes potentially involved in lignin biosynthesis and stress responses. Full article

Bone defects have become a leading cause of disability and mortality. The pro-inflammatory state and impaired vascularization are major factors hindering bone defect repair. However, current bone regeneration materials lack the ability to regulate the osteoimmune microenvironment and promote vascularized bone regeneration. In this study, we employed clinically used fat emulsion (FE), which is intravenously administered to provide nutrition and energy for patients, to investigate the effect of immunomodulation on promoting angiogenesis and osteogenesis. Results from RT-qPCR analysis and immunofluorescence staining demonstrated that FE exhibited potent anti-inflammatory effects by reducing the expression of the pro-inflammatory marker inducible nitric oxide synthase (iNOS) and upregulating the expression of the anti-inflammatory marker transforming growth factor-beta (TGF-β). Endothelial tube formation and scratch assays demonstrated that FE promoted angiogenesis and cell migration by releasing vascular endothelial growth factor (VEGF) within the inflammatory microenvironment. Alkaline phosphatase (ALP) and alizarin red S (ARS) staining revealed that FE facilitated ALP activity and calcium nodule formation by releasing bone morphogenetic protein-2 (BMP-2) within the inflammatory microenvironment. These findings may prove promising and cost-effective for the clinical treatment of bone defects. Full article

Objectives: In this study, we explore the molecular basis of the literature-reported inverse association between brain neoplasms and neurodegenerative disorders, including Parkinson’s disease (PD). As miRNAs are post-transcriptional regulators, we selected them as candidates underlying opposite processes of neurodegeneration and glioma development. Methods: We used bioinformatic analyses for disease-gene extraction, miRNA target prediction, enrichment analyses, and miRNA ranking. We identified 953 shared genes between PD and glioblastoma (GBM) in DisGeNET, then prioritized miRNAs predicted to regulate the largest number of shared targets. Next, we collected peripheral blood from patients with PD (n = 12), patients with gliomas (the most advanced—grade IV, n = 10 and grade III n = 3) and controls undergoing spinal surgery for disk pathology (n = 10). Blood samples were obtained pre-operatively in controls and glioma patients. Tumor and peritumoral tissues were obtained from glioma patients, whereas tissue sampling is not feasible in PD. Brain tissues and plasma were analyzed using RT-qPCR (miRNA) and ELISA (p53). Results: We observed increased levels of miR-16-5p (p < 0.05) and p53 protein (p < 0.05) in tumor tissues compared with peritumoral tissue. Additionally, miR-16-5p and miR-32-5p plasma levels were elevated in glioma patients compared with both PD patients (p < 0.01 and p < 0.001, respectively) and controls (p < 0.01 and p < 0.001, respectively). Plasma levels in PD did not differ from controls. Conclusions: Although these analyses highlight miR-16-5p and miR-32-5p as candidate biomarkers associated with glioma related pathways, the results did not provide evidence for the expected opposite regulation between PD and glioma. Future studies with a larger cohort of patients using high-throughput methods are needed to validate these findings and to elucidate the mechanisms driving neurodegeneration or excessive proliferation. Full article

Temperature and humidity are critical abiotic factors shaping the survival and adaptation of insect pests. However, the molecular mechanisms underlying high-temperature tolerance under contrasting humidity conditions remain poorly understood, particularly in globally invasive species such as the tomato pinworm, Tuta absoluta. Previous studies have examined individual stressors, leaving interactive thermo-hygrometric effects on gene expression and survival insufficiently resolved. Here, we assessed the contribution of cytochrome P450 genes to thermal adaptation under low- and high-humidity conditions using transcriptome profiling combined with nanocarrier-mediated RNA interference (RNAi). Third-instar larvae were exposed to high temperature under low humidity (HT-LH: 40 °C, 50% RH) or high humidity (HT-HH: 40 °C, 75% RH) for eight hours. Survival declined from 97.5% in the control to 74.16% under HT-LH and 68.33% under HT-HH conditions. Transcriptome analysis revealed extensive differential gene expression, with 464 genes upregulated and 565 downregulated in HT-LH, and 1145 upregulated and 1166 downregulated in HT-HH. Functional annotation highlighted pathways linked to metabolic regulation, proteostasis, and detoxification, including multiple cytochrome P450-associated processes. RT-qPCR confirmed the upregulation (3–5 fold) of four P450 genes (CYP6AB327, CYP6ABF1b, CYP6AE214, and CYP9A306c) under high temperature across both humidity regimes. RNAi-mediated silencing of these genes significantly reduced larval survival, demonstrating their functional role in thermal-hygrometric stress tolerance across. Cytochrome P450 genes underpin the adaptive capacity of the tomato pinworm to high-temperature stress across contrasting humidity conditions, highlighting RNAi-based disruption of P450 function as a promising avenue for sustainable pest management under climate change scenarios. Full article

In order to investigate the prevalence of duck Tembusu virus (DTMUV) in several regions of China, this study conducted an epidemiological survey on 2674 avian throat swab samples (including chickens, ducks, geese, and pigeons) collected from seven provincial-level administrative regions in China in 2024. Following RT-qPCR testing, 198 positive samples were identified, demonstrating an overall positivity rate of 7.40% (198/2674) across the seven provinces included in the study. Subsequent virus isolation using BHK-21 cells led to successful isolation in 17 cases. Additionally, genetic evolution analysis of the partial NS5 gene was carried out on these 17 isolates through RT-PCR amplification and sequencing. The data analysis indicated that Guangdong Province had the highest positive detection rate, reaching 22.40% (86/384), followed by Henan at 12.24% (47/384). Among infected hosts, geese were primarily affected by DTMUV, with a positivity rate of 40.76% (97/238). The prevailing subgroup of DTMUV in circulation in China is subgroup 3.2. Farmer’s markets, wholesale markets, slaughterhouses, and poultry farms all showed evidence of DTMUV presence, indicating widespread contamination across diverse locations. This study examines the distribution, genetics, and phylogenetic features of DTMUV in China, which will enhance our comprehension of the epidemiological landscape of DTMUV in China. Full article

Neonicotinoids are widely used pesticides that have caused a catastrophic decrease in bee and bumblebee populations worldwide. In addition to insects, neonicotinoids induce toxic effects in other species, including lizards, birds, and mammals. Previous studies have shown that gestational exposure to thiacloprid promotes transgenerational effects in the testes and thyroid. In this project, we described the epigenetic effects of thiacloprid on prostate tissue in directly exposed F1 and non-directly exposed F3 outbred Swiss male mice. We used paraffin sections for morphological analysis and frozen tissue for immunofluorescence analysis, RT–qPCR, and protein analysis. We purified histones and analyzed them through Western blot. We used ChIP–qPCR for histone H3K4me3 occupancy analysis. A tendency to increase in epithelial hyperplasia in F1 but not in F3 prostate was detected. Elevated levels of phosphorylated histone H3 at serine 10, a marker of mitosis, in both the F1 and F3 prostates were noted. A significant increase in the level of the Ki-67 marker of proliferation was detected in the F1 but not in the F3 anterior prostate. Hox gene expression was upregulated in the F1 and downregulated in the F3 prostate. The changes in gene expression were positively associated with histone H3K4me3 alterations at the promoters of the Hoxa and Hoxb13 genes. We determined that regions of Hox genes that play important roles in prostate development had altered DNA methylation in the sperm of F1 and F3. These alterations in DNA methylation were negatively related to gene expression. This is an observational study, as it was part of our previous research on the effects of thiacloprid on the testis and thyroid. Our analysis revealed that gestational exposure to thiacloprid induced an increase in cell proliferation in the prostates of directly exposed F1. Some persistent epigenetic alterations in the prostate of F3 males were not associated with phenotypic changes. Full article