Search Results (4,125)

Background: The human gastrointestinal tract harbors a complex microbiota that plays a vital role in metabolic health. Dysbiosis of the gut microbiome has been linked to metabolic syndrome (MetS), a growing health concern characterized by obesity, hypertension, and dyslipidemia, all of which are strongly associated with insulin resistance and low-grade inflammation. This study aimed to analyze changes in gut microbiome composition and metabolic parameters in individuals with MetS following a 3-month shared medical appointment program driven by a patient-centered agenda with an emphasis on lifestyle pillars of diet, activity, sleep, and stress management. Methods: Thirty-six individuals with MetS were recruited. Of these, 14 completed a structured metabolic health program with facilitated group appointments, including personalized dietary adjustments, increased physical activity, stress management, and clinical monitoring, while 22 served as an untreated group. Fecal samples were collected for full-length 16S rRNA sequencing. Clinical and biochemical parameters, including body weight, blood pressure, HbA1c, triglycerides, and liver enzymes, were assessed. Microbiome data were analyzed for alpha and beta diversity and differential abundance. Correlations between microbial genera and clinical parameters were evaluated using Spearman correlation. Results: Post-intervention, significant improvements were observed in body weight (p = 0.0061), HbA1c (p = 0.033), triglycerides (p = 0.047), AST (p = 0.016), and systolic blood pressure (p = 0.020). Alpha and beta diversity of the gut microbiome showed no significant changes. However, differential abundance analysis revealed increased levels of butyrate-producing and anti-inflammatory genera including Duncaniella, Megasphaera, Pseudoruminococcus, and Oliverpabstia. Conclusions: A 3-month lifestyle intervention in individuals with MetS was associated with marked improvements in metabolic health and beneficial shifts in gut microbiota composition. These findings suggest that even small lifestyle modifications may be a potential therapeutic target for metabolic syndrome management, highlighting the need for personalized approaches in future research. Full article

Background/Objectives: The butterfish Stromateus stellatus is undervalued and usually discarded as bycatch, leading to an inefficient and unsustainable use of marine biomass. Overall, although Stromateus is the type genus of the family Stromateidae, its species are less studied than more economically important fishes. Methods: In this study, we determined and analyzed the complete mitochondrial genome sequence of S. stellatus. Furthermore, we performed maximum likelihood and Bayesian inference analyses to infer the phylogenetic relationships among 21 species of the order Scombriformes. Results: Using next-generation sequencing (NGS) and de novo assembly, a circular mitochondrial genome of 16,509 bp was obtained, exhibiting the typical vertebrate mitochondrial structure comprising 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes. Three intergenic regions were identified, including the control region and the origin of light-strand replication, along with several gene overlaps. The heavy strand nucleotide composition was determined to be 28.79% A, 27.84% C, 16.32% G, and 27.05% T, with a GC content of 44.16%. The three Peprilus and five Pampus species formed a clade together with S. stellatus, supported by high bootstrap and posterior probability values, confirming the monophyly of Stromateidae. Conclusions: The gene order and content are consistent with those reported for other Stromateidae species and correspond to the typical arrangement observed in most bony fishes. This mitochondrial genome represents the first one reported for the genus Stromateus, providing valuable insights into the genetic makeup of S. stellatus, contributing to a better understanding of marine biodiversity. Additionally, these data will support future research on pelagic fish evolution and assist in sustainable fisheries management. Full article

While stamen-focused research has predominantly examined flowering ornamental species, the tissue-specific regulatory mechanisms governing anthocyanin biosynthesis in potato stamens remain poorly understood. To characterize the tissue-specific regulatory mechanisms controlling anthocyanin biosynthesis in potato reproductive and storage organs, this investigation employed the red stamen mutant line ‘BF1811-8’ and the commercial cultivar ‘Atlantic’ as experimental models. Anthocyanin composition and quantification were determined using high-performance liquid chromatography (HPLC), while RNA-sequencing coupled with quantitative real-time PCR validation enabled comprehensive analysis of differential gene expression patterns within the anthocyanin biosynthetic pathway. Biochemical analysis revealed complete absence of anthocyanins across all examined tissues in ‘Atlantic’, whereas ‘BF1811-8’ exhibited tissue-specific anthocyanin profiles: stamens accumulated delphinidin and pelargonidin, while tuber skin and flesh primarily contained pelargonidin and peonidin. Gene ontology and KEGG pathway enrichment analysis of differentially expressed genes identified significant representation within secondary metabolism, flavonoid biosynthesis, and pigmentation processes. The transcription factors StMYB4 and StMYBA1 demonstrated positive regulatory roles in anthocyanin biosynthesis within tuber flesh and skin, respectively, while exhibiting coordinated expression with structural genes including CHS, DFR, ANS, and GST. Notably, StbHLH94 showed stamen-specific regulatory activity and demonstrated transcriptional co-regulation with 3GT. These findings provide crucial insights into the tissue-specific regulatory architecture governing potato anthocyanin biosynthesis, establishing a foundation for elucidating molecular mechanisms underlying tissue-specific pigmentation and advancing functional cultivar development. Full article

Glucosinolates (GSLs) are nitrogen- and sulfur-containing secondary metabolites central to the defense, development, and environmental responsiveness of Brassicaceae species. While the enzymatic steps and transcriptional networks underlying GSL biosynthesis have been extensively characterized, mounting evidence reveals that chromatin-based processes add a critical, yet underexplored, layer of regulatory complexity. Recent studies highlight the roles of DNA methylation, histone modifications, and non-coding RNAs in modulating the spatial and temporal expression of GSL biosynthetic genes and their transcriptional regulators in response to developmental cues and environmental signals. This review provides a comprehensive overview of GSL classification, biosynthetic pathway architecture, transcriptional regulation, and metabolite transport, with a focus on emerging epigenetic mechanisms that shape pathway plasticity. We also discuss how these insights may be leveraged in precision breeding and epigenome engineering, including the use of CRISPR/dCas9-based chromatin editing and epigenomic selection, to optimize GSL content, composition, and stress resilience in cruciferous crops. Integrating transcriptional and epigenetic regulation thus offers a novel framework for the dynamic control of specialized metabolism in plants. Full article

Vaccines have emerged as one of the most effective biomedical strategies for the eradication of diseases. However, a significant limitation remains in their ability to induce comprehensive humoral and cellular immune responses. Recently, nanoparticles (NPs) have been advanced as a novel vaccine delivery approach to address reduced immunogenicity. Several nanoparticle-based agents have now been approved for human use, and NP-based formulations have shown remarkable potential to enhance immunogenicity and stability, supporting targeted delivery and controlled release either through co-encapsulation of adjuvants such as Toll-like receptor (TLR) agonists or the inherent immune-stimulatory properties of NP materials in minimizing cytotoxicity. Despite these advances, there remains a pressing need for vaccines capable of addressing complex and multifactorial diseases such as neurological disorders and cancer. Nanotechnology could be a viable solution to this challenge. The use of lipid-based NPs, particularly those encapsulating mRNA, has garnered attention for its adaptability in vaccine delivery. Current studies indicate that NP composition, surface charge and size may play a crucial role in modulating biodistribution, delivering immune-stimulatory molecules, targeting antigens and trafficking antigen-presenting cells (APCs), which enhance immune responses across mucosal and systemic tissues. This review highlights recent advancements in NP-based vaccines and delivery systems, and adjuvants for cancer and neurological disorders. The review also covers an overview of NP-based and alternative delivery systems, focusing on the mechanisms and innovations related to NP-based systems for immunotherapeutic applications in cancer and neurological disorders. Full article

Steroidal pharmaceutical wastewater, such as stock liquid and cell lysate, is conventionally treated at a high cost due to its complex composition and high organic content. To treat steroidal pharmaceutical wastewater, make it harmless, and utilize it as a resource, engineering exploration of large-scale biogas engineering was carried out based on its anaerobic digestion characteristics, and the microbial population in the digestion process was analyzed. The results showed that, at a medium temperature of 35 °C and a total solid percentage of 6.5% ± 0.5%, both stock liquid and cell lysate wastewater could be anaerobically fermented normally, with the potential for anaerobic digestion treatment. The cumulative biogas production of lysate gas from the supernatant could reach 758 mL/gVS, which was significantly better than that of traditional raw materials such as straw and feces. The methane content reached 78.9%, and the total VFAs reached 10,204 mg/L on the ninth day. Moreover, we found that co-digestion of steroidal pharmaceutical wastewater with corn straw (CS) significantly enhanced system stability and biogas production efficiency, with synergistic improvement reaching up to 42%. This approach effectively shortened the lag phase observed in the mono-digestion of steroidal pharmaceutical wastewater. Actual treatment in a large-scale biogas project revealed that, after the addition of two kinds of wastewater, the main and auxiliary reactors presented serious acidification problems. Of these, the total volatile fatty acids in the main reactor reached up to 21,000 mg/L, and the methane content in the biogas production decreased to 25%. Additionally, 16S rRNA high-throughput sequencing analysis showed that, after the addition of steroidal pharmaceutical wastewater, the archaea community in the anaerobic reactor changed significantly due to the stress of changes in the fermentation environment. Euryarchaeota became the absolute dominant bacteria, and the methanogenic pathway also changed to the hydrogen trophic methanogenic pathway with Methanothermobacter as the absolute dominant bacterium. This is the first successful industrial-scale application of biogas engineering for treating steroid wastewater, demonstrating its technical feasibility and energy recovery potential. These research outcomes provide critical engineering parameters and practical experience for large-scale resource recovery from similar wastewater streams, offering important reference values for advancing pharmaceutical wastewater treatment from compliance discharge to energy utilization. Full article

(1) Background: Recurrent urinary tract infections (rUTIs) are common among peri- and postmenopausal women, partly due to hormonal changes that disrupt the vaginal microbiota. A reduction in Lactobacillus dominance is associated with increased risk of rUTI. Although antibiotics remain the standard of care, their use contributes to the emergence of multidrug-resistant pathogens. Probiotics may offer a non-antibiotic alternative; however, clinical evidence remains limited. (2) Methods: The VaMirUTI study is a prospective, monocentric, non-randomized cohort investigating the combined effect of oral probiotics and vaginal estriol on vaginal and urinary microbiota in peri- and postmenopausal women with recurrent UTIs. The primary endpoints are (i) change in Lactobacillus dominance at 3 months and (ii) UTI recurrence at 12 months. A total of 100 women (70 rUTI, 30 controls) will be followed for up to 12 months. Vaginal swabs and urine samples will be collected at baseline, during UTI episodes, and at study completion. Vaginal microbiota composition will be analyzed by 16S rRNA gene sequencing. (3) Results: This protocol outlines the study design and methodology. The primary outcome is the change in vaginal Lactobacillus dominance following the intervention. Secondary outcomes include UTI recurrence rates and the identification of microbiota signatures associated with rUTI. (4) Conclusions: The VaMirUTI study will clarify the relationship between vaginal microbiota, oral probiotic supplementation, and rUTI in menopausal women, potentially informing future non-antibiotic preventive strategies. Full article

Adolescent pregnancy is a significant public health concern, with maternal and fetal risks compounded by pregnancy-related anatomical, hormonal, and urinary changes that predispose to urinary tract infections (UTIs). Alterations in the urinary microbiome may further influence infection susceptibility, yet little is known about its role during adolescent pregnancy. This study analyzed the urinary microbiome of adolescent pregnant patients and its association with UTI and recurrent UTI (rUTI) across gestation. Healthy adolescents were enrolled in the first trimester and followed through subsequent trimesters, with urine samples collected at each visit for microbiological diagnosis. Patients were classified as healthy (34 samples), single UTI (22 samples), or rUTI (31 samples), and oxford-nanopore 16S rRNA sequencing was used to assess taxonomic composition, microbial diversity, and operational taxonomic units. Distinct trimester-specific patterns were observed, with Lactobacillus iners progressively increasing and L. kitasatonis emerging as a dominant taxon during adolescent pregnancy. Interestingly, rUTI cases showed persistent E. coli, reduced L. kitasatonis and L. ultunensis in the second trimester, and the appearance of Fannyhessea vaginae (Atopobium vaginae) in the third. These findings suggest a potential microbial signature of rUTI in adolescent pregnancy, underscoring the need for personalized preventive strategies and the establishment of microbiome-based clinical cutoffs. Full article

Straw return is crucial for sustainable agriculture, but its efficiency is limited by low temperatures in cold regions, especially in saline-alkali soils. This study investigates the degradation process of maize straw and the response of soil properties and microbial communities during the winter low-temperature period in the alkaline farmland of Anda, China. A two-year field experiment with straw return (SR) and no return (NR) treatments was conducted. Straw degradation rates and structural changes (as observed via scanning electron microscope, SEM) were monitored. Soil physicochemical properties and enzyme activities were analyzed. Microbial community composition was characterized using 16S rRNA and ITS sequencing. The cumulative straw degradation rate over two years reached 94.81%, with 18.33% occurring in the first winter freeze–thaw period. Freeze–thaw cycles significantly damaged the straw structure, facilitating microbial colonization. Straw return significantly improved soil properties after winter, increasing field water capacity (3.45%), content of large aggregates (6.57%), available nutrients (P 38.17 mg/kg, K 191.93 mg/kg), and organic carbon fractions compared to NR. Microbial analysis revealed that low temperatures filtered the community, enriching cold-tolerant taxa like Pseudogymnoascus, Penicillium, and Pedobacter, which are crucial for lignocellulose decomposition under cold conditions. The winter period plays a significant role in initiating straw degradation in cold regions. Straw return mitigates the adverse effects of winter freezing on soil quality and promotes the development of a cold-adapted microbial consortium, thereby enhancing the sustainability of alkaline farmland ecosystems in Northeast China. Full article

Seed priming has become a promising technique in agriculture and crop-stress management. Several authors have shown that the positive effects of seed priming are associated with various metabolic, physiological, and biochemical modifications (enzyme activation, membrane repair, initiation of DNA/RNA, and protein synthesis) that enhance the speed, uniformity, and vigor of germination. However, the mechanisms underlying seed priming are not yet well understood. The aim of our work was to study the quantitative and qualitative metabolic changes in the embryonic axes (radicle and plumule) and cotyledons of Vigna unguiculata (L.) Walp. Seeds were subjected to osmopriming with polyethylene glycol (PEG), simple hydropriming, and double hydropriming (a novel treatment). Results indicated that all types of priming, particularly double hydropriming, strongly stimulated the hydrolysis of protein and carbohydrate reserves. This resulted in a decrease in soluble proteins and starch contents and an increase in amino acids and soluble sugars contents. Moreover, the priming promoted the biosynthesis of osmolytes such as proline and induced qualitative changes in the composition of amino acids and soluble sugars. These biochemical changes depend on the organ and treatment method applied to the seeds. It is worth noting that double hydropriming induces metabolic modifications to a greater extent than single hydropriming. Full article

Emerging evidence highlights extracellular vesicles (EVs), especially exosomes, as critical molecular messengers linking pediatric obesity to multi-organ complications. This scoping review synthesizes current knowledge on EVs-mediated intercellular communication that exacerbates inflammation, insulin resistance, endothelial dysfunction and organ-specific damage. Data demonstrate that adipose- and endothelial-derived EVs carry bioactive cargo, microRNAs, proteins, and lipids, that modulate key pathways driving metabolic derangements and vascular injury, often preceding detectable clinical biomarkers. Notably, maternal obesity influences EVs composition in breast milk, shaping early-life metabolic programming and offspring risk of obesity. Recent studies underscore the diagnostic and therapeutic potential of EVs in obesity-related conditions such as metabolic-associated fatty liver disease (MAFLD), early renal injury, and cardiovascular dysfunction in children. Furthermore, EVs released in response to exercise or bariatric surgery may mediate systemic metabolic improvements, offering a novel window into personalized interventions. Despite promising findings, standardization of EV isolation and profiling in pediatric research is lacking, and large-scale longitudinal studies are urgently needed. By deepening our understanding of EVs biology, clinicians may advance early detection, risk stratification, and targeted therapies to interrupt the progression from childhood obesity to lifelong metabolic and cardiovascular disease. Full article

The rising popularity of raw goat milk has heightened concerns about its safety. This study examined how differences in milking and cleaning practices influence the quality and microbiota of goat milk from small-scale Oregon farms during July and August. Milk quality was assessed through somatic cell counts (SCCs) and components, while microbiota was evaluated using viable counts and 16S rRNA sequencing. Sequencing revealed a diverse microbial community, dominated by genera such as Staphylococcus, Escherichia-Shigella, and Pseudomonas, with pathogenic taxa like Salmonella and Campylobacter largely absent or detected at negligible levels. Alpha diversity varied significantly among sample types but not across farms, and beta diversity indicated considerable dissimilarity in microbial composition. Importantly, regression models identified significant associations between hygiene practices and bacterial abundance: the absence of glove use and hand sanitation was linked to increased levels of Escherichia-Shigella, Kocuria, Enterococcus, and Corynebacterium, while the use of bleach-chlorhexidine sanitizer was associated with higher Deinococcus. These findings highlight the role of rigorous hygiene protocols in shaping the microbiota of raw goat milk and emphasize the need for targeted practices to minimize contamination risks. Full article

Microorganisms are fundamental drivers of soil productivity, mediating nutrient cycling and pathogen suppression. In this study, we evaluated changes in the fungal community in the soil of barley (Hordeum vulgare L.) in a field experiment involving the application of a consortium of Paenibacillus pabuli, Priestia megaterium, Pseudomonas koreensis, and Pseudomonas orientalis. Seed pretreatment and seed pretreatment followed by rhizosphere drenching at different growth stages were implemented. Regarding fungal communities in bulk soil, the rhizospheres of untreated and treated plants were characterized based on full-length ribosomal RNA gene (18S-5.8S-28S) metabarcoding sequencing. Despite the compositional shifts, no statistical differences were observed among the alpha diversity metrics. Seed treatment resulted in long-term, targeted suppression of Fusarium graminearum, Fusarium fujikuroi, Fusarium musae, and Fusarium verticillioides from the booting through flowering and dough development stages, outperforming seed pretreatment followed by rhizosphere drenching. A low-modularity network was observed in the rhizosphere of untreated plants. Seed treatment fostered a highly interconnected and uniform network with low hub-betweenness scores. Rhizosphere drenching of pretreated seeds shifted the network topology toward higher hub-betweenness scores, reducing their connectivity by up to 10% in the rhizosphere and bulk soil. These findings provide a framework for optimizing the soil ecosystem for sustainable agriculture. Full article

Populus koreana emits a wide array of volatile organic compounds (VOCs) with potential ecological functions; however, the tissue-specific distribution and underlying regulatory mechanisms of these compounds remain poorly understood. This study employed an integrated approach combining gas chromatography-mass spectrometry (GC-MS)-based metabolomics and RNA-seq to systematically profile VOC composition and gene expression in terminal buds, stems and leaves of P. koreana. A total of 207 VOCs were identified, predominantly terpenes and aromatic compounds, exhibiting distinct tissue-specific accumulation patterns. Terminal buds were enriched in limonene and caryophyllene, while leaves showed higher concentrations of alcohols and phenolic aldehydes. Transcriptomic analysis revealed 12,733 differentially expressed genes (DEGs) among the three organs, with substantial enrichment in terpenoid and phenylpropanoid biosynthetic pathways. Notably, key upregulated genes in buds, including TPS21 and PAL1, correlated with observed VOC profiles. Weighted gene co-expression network analysis (WGCNA) further identified 6365 genes strongly associated with bud-specific VOC biosynthesis. Integrated omics analyses indicated coordinated regulation of phenylalanine metabolism and transcription factors in VOC production. These findings illuminate the molecular mechanisms underlying tissue-specific VOC accumulation in P. koreana, enhancing our understanding of metabolic specialization and ecological adaptation in woody plants. Full article

Therapeutics involving small interfering RNA (siRNA) have enormous potential for treating a number of diseases, but their effective delivery to target cells remains a major challenge. We studied the influence of the structure and combination of targeted (folate conjugated, F13) and shield lipoconjugates (P1500, diP1500) on the ability of cationic liposomal formulations based on the 2X3-DOPE system to deliver siRNA into cells in vitro and in vivo. The loop-structured PEG lipoconjugate equipped with two hydrophobic anchor groups (diP1500) demonstrated superior performance across multiple evaluation criteria. The F13/diP1500 composition maintained a compact particle size (126.0 ± 23.0 nm), while F13/P1500 with the same PEG chain equipped with one anchor group maintained an increased particle size of 241.8 ± 65.7 nm. Most critically, F13/diP1500 preserved substantial positive surface charges (21.6–30.5 mV) across all N/P ratios, demonstrating superior ability in avoid the “PEG dilemma”, whereas F13/P1500 suffered substantial charge neutralization (3.9–9.1 mV). Competitive inhibition with free folate confirmed receptor-mediated cellular accumulation of siRNA mediated by F13 containing liposomal compositions. In vivo biodistribution revealed statistically significant circulation advantages: DSPE-PEG2000/diP1500 achieved the highest plasma concentration at 15 min (1.84 ± 0.01 pmol/mL), representing the first direct in vivo comparison of compositions with PEG lipoconjugates of the same length, but formed different structures in the liposomes due to the presence of one or two anchor groups. Our findings provide critical insights for the rational design of targeted liposomal delivery systems, highlighting the importance of balanced optimization between folate targeting functionality and PEG shielding for effective siRNA delivery both in vitro and in vivo. Full article