Search Results (19)

Insect mitochondrial genomes are vital to understanding evolutionary relationships and identifying species. This study focused on Microtendipes (Chironomidae), a genus with unresolved phylogenetic positioning and cryptic species challenges. We sequenced and analyzed eight mitogenomes from five Microtendipes species, integrating 23 published Chironominae mitogenomes to reconstruct phylogenies using Maximum Likelihood and Bayesian Inference. The mitogenomes exhibited conserved gene arrangements but variable control region lengths (338–1266 bp) and high AT content (94.14–96.42% in control regions). Our results show that Microtendipes species may be a separate group within the subfamily, while also supporting the monophyly of the Harnischia, Polypedilum, and Chironomus complexes. The monophyly of Microtendipes bimaculus was weakly supported, which may demonstrate the presence of two potential cryptic species. Notably, larval morphology-based species groupings conflicted with the molecular data, suggesting that classifications derived from larval morphological traits may be unreliable. This study advances the evolutionary understanding of Chironomidae and underscores the limitations of single-gene barcodes in species-rich genera. Full article

The Harnischia generic complex, a significant assemblage within the tribe Chi-ronomini, extensive global sampling and the integration of multi-characteristic data for comprehensive analysis are essential to elucidate the phylogenetic relationships within the Harnischia generic complex. We sequenced, assembled, and annotated the mitochondrial genomes of a single species each from the genera Parachironomus Lenz, Robackia Saether and Saetheria Jackson. Additionally, we incorporated 26 previously published mitogenomes into our analysis to delve deeper into the characteristics of these mitogenomes. Our findings indicate the close affinity between (Cryptochironomus + Demicryptochironomus) and (Harnischia + Microchironomus), aligning consistently with previous research outcomes showing that the Harnischia generic complex and Chironomus are phylogenetically close, and their clade forms a sister group with the Polypedilum generic complex. Based on mitochondrial genome data, Robackia is identified as the basal taxon being relatively primitive, with Parachironomus and Saetheria also appearing as primitive within the complex. Full article

Against the backdrop of hydropower development in the upper Yellow River, comprehending the spatiotemporal variation and ecological evaluation of macroinvertebrate functional feeding groups (FFGs) is paramount for the conservation and restoration of aquatic biological resources in watersheds. Detailed surveys of macroinvertebrates were conducted in the gorge and plain areas of the upper Yellow River in July 2022 and March, May, and October 2023, culminating in the identification of 65 taxonomic units (genus or species) spanning 4 phyla, 14 orders, and 35 families. Of these, 41 taxonomic units were discovered in the gorge areas and 57 in the plain areas. Among the FFGs of macroinvertebrates in the upper Yellow River, collector-gatherers were overwhelmingly dominant, followed by scrapers, collector-filterers, predators, and shredders. Concerning river section types, dominant species in the gorge areas included Gammarus sp., Limnodrilus hoffmeisteri, and Polypedilum sp. among collector-gatherers, while in the plain areas, dominant species included Ecdyonurus sp. among scrapers, Hydropsyche sp. among collector-filterers, and Gammarus sp., Limnodrilus hoffmeisteri, and Chironomus sp. among collector-gatherers. A Mantel test revealed that dissolved oxygen, conductivity, and orthophosphate were the primary environmental factors affecting the FFGs of macroinvertebrates in the upper Yellow River, with variations observed in their effects across different months. The evaluation results of the Hilsenhoff Biological Index and Shannon–Wiener Index indicate that the water quality of the upper Yellow River is at a moderate level. An assessment of the upper Yellow River ecosystem using FFG parameters demonstrated that macroinvertebrate biomass progressively increased from upstream (gorge areas) to downstream (plain areas) spatially, accompanied by increasing habitat stability, with cascade hydropower development identified as a key factor impacting habitat stability. These findings provide pertinent data and a theoretical foundation for the protection of aquatic biological resources and watershed management in the upper Yellow River. Full article

(1) Background: Mitochondrial genomes have been extensively employed as a crucial marker in numerous dipteran families for understanding phylogenetics and systematics relations, thereby playing a pivotal role in molecular biology studies. The phylogenetic relationship of the Harnischia generic complex remains contentious due to the paucity of taxonomic and molecular data. Specifically, the evolutionary relationships among Cryptochironomus, Demicryptochironomus, and Harnischia are still unclear. (2) Methods: In this study, Polypedilum and Endochironomus were used as outgroups to analyze phylogenetic relationships among Cryptochironomus, Demicryptochironomus, and Harnischia, mitogenomes of four Cryptochironomus, two Demicryptochironomus, two Harnischia, and two Cladopelma were newly sequenced. Subsequently, we conducted a thorough analysis of the nucleotide composition, sequence length, and evolutionary rate. (3) Results: All mitogenomes exhibited structural conservation, with all genes consistently arranged in the identical order as that of the ancestral mitogenome. Nucleotide composition varied significantly among different genes, and the control region displayed the highest A + T content. All protein-coding genes undergo rigorous purification selection, with the ATP8 gene exhibiting the most rapid evolutionary rate among them. Utilizing Bayesian Inference (BI) and Maximum Likelihood (ML) methods across various databases, we reconstructed the phylogenetic relationships among the genera within the Harnischia generic complex, drawing insights from an analysis of 14 mitochondrial genomes. (4) Conclusions: Our results showed that the monophyly of the genera Harnischia was well supported in all topologies; Cryptochironomus is sister to Demicryptochironomus. Full article

This study was carried out at the Danube River and its tributaries during the Joint Danube Survey 4 (JDS4) expedition. Three freshwater benthic species were used to estimate the quantity of microplastics (MPs): Corbicula spp., Limnodrilus hoffmeisteri (Claparede, 1862), and Polypedilum nubeculosum (Meigen, 1804). Following the kick and sweep technique, individuals were sampled using a hand net or dredge. In order to estimate the number of MP particles/individual particles/g wet body mass, the body mass and total length of all specimens were measured. Alkaline (Corbicula spp. and L. hoffmaisteri) and enzymatic (P. nubeculosum) protocols were performed for tissue degradation. All samples were filtered through glass microfiber filters (mesh size 0.5 µm). The particles were photographed, measured, and counted. A total of 1904, 169, and 204 MPs were isolated from Corbicula spp., L. hoffmaisteri, and P. nubeculosum, respectively. To confirm the chemical composition of isolated MPs, a subsample of 46 particles of the fragmented particles from 14 sampling sites was analysed via µ-ATR-FTIR spectroscopy analysis. The particles were characterised as polycarbonate (PC), polyethylene terephthalate (PET), polypropylene–polyethylene copolymer (PP-PE), nylon (polyamide-PA) and cellophane, with the domination of PET. Full article

In this study, the composition and structure of the macrobenthic community in the Ulungu River Basin was investigated and the water quality status of the basin was evaluated. In May and August 2022, and October 2023, the macrobenthic and water environmental factors at 11 sample sites in the basin were investigated, and the water quality of the basin was evaluated by the Shannon–Wiener index, FBI, and BMWP index. A total of 6101 macrobenthic organisms were collected; these organisms belonged to 3 phyla, 7 classes, 14 orders, 57 families, and 117 genera. Arthropod species accounted for the largest number of species (87.9%). A total of nine dominant species were found: Micronecta sp., Eukiefferiella sp., Baetis sp., Polypedilum sp., Saetheria sp., Ephemerella sp., Limnodrilus sp., Ephemera sp., and Hydropsyche sp. At the temporal level, the average density and biomass of macrobenthos were in the order of August > October > May; at the spatial level, the average density was greater in the tributaries than in the main stream, and the average biomass was greater in the main stream than in the tributaries. The mean values of the Shannon—Wiener index and Margalef richness index were as follows: August > October > May at the temporal level; the mean values of the Pielou evenness index were as follows: May > October > August at the temporal level. At the spatial level, the overall mean value of each diversity index indicated that the tributaries had larger diversity indices than the main stream. The water quality evaluation results revealed that the overall water quality level of the Ulungu River Basin ranges from light pollution to poor quality. Human interference activities greatly impact the water quality of the basin. To restore the ecology of the basin, it is necessary to strengthen the management and control of pollution sources. Full article

The Toce River (Northern Italy) is characterized by legacy contamination of dichloro-diphenyl-trichloroethane (DDT), mercury, and arsenic deriving from an industrial plant active between ca. 1915 and 1996. Chironomidae taxa assemblages and sediments were collected in 2014 and 2019 upstream and downstream of the industrial area to analyze species responses to toxic substances in a river stretch with relatively uniform natural (i.e., hydro-morphological) characteristics. A total of 32 chironomid taxa were identified. Sediment concentrations reached levels potentially toxic for benthic invertebrates: 15.7 µg kg⁻¹ 1% organic carbon for DDT, 197 µg kg⁻¹ dry weight (d.w.) for Hg, and 55.7 mg kg⁻¹ d.w. for As. Canonical Correspondence Analysis (CCA) revealed a predominant seasonal gradient, followed by an upstream-downstream gradient. Partial CCA indicated that 5.2% of the total variation was associated with sediment contamination. Self-Organizing Maps (SOMs) were used to represent species responses to toxicants. Most species appeared to be tolerant, e.g., Chironomus riparius, Micropsectra atrofasciata, Conchapelopia pallidula, and Polypedilum spp. Sensitivity to contaminants was observed in only a few species: Diamesa spp., Sympotthastia spinifera, and Prodiamesa olivacea to DDT; Potthastia longimanus to Hg; Odontomesa fulva and Microtendipes pedellus to As. The chironomid community was characterized in presence of contamination levels commonly observed in freshwater ecosystems. Full article

For the first time, the size spectra of 28 chironomid genera/species are reported for the most common chironomid taxa in the deep subalpine Lake Maggiore (northwestern Italy). Species-specific length–mass regression models were developed to predict the dry masses of the larval stages of Cladotanytarsus sp., Cryptochironomus sp., Polypedilum bicrenatum, P. nubeculosum, and Stictochironomus pictulus. The predicted dry-mass values differed by less than 20% from the measured values, suggesting that these original equations will be important in chironomid production studies. Regressions at the subfamily level were also developed for case identification at the genus or species level, which is difficult to obtain. The chironomid weights were determined directly and a dry/wet-weight-conversion ratio was estimated. The results were consistent with previously reported results. The relationships between the dry masses and the body lengths were compared with published data for different types of lake all over the world. We found that regression models for other freshwater environments somehow differed from those in Lake Maggiore, albeit slightly. The combination of diversity-based and trait-based approaches improves our knowledge about chironomids and our understanding of the effects of global environmental changes on freshwater biota. This first collection of trait data on summer–autumn chironomid assemblages in a temperate subalpine lake is a valuable contribution to the European trait database. The taxonomic diversity and abundance of chironomids were uploaded for open access on the GBIF platform. Full article

The São Francisco River (one of the most important South American rivers) has many contamination sources, but just a few environmental assessments have been conducted. A weight-of-evidence approach identified the pollution sources (industrial activities, mineral processing, fisheries, and tourism) in the river and the city of Três Marias based on two different lines of evidence: the structure of the benthic community (biological monitoring working party score system, abundance of taxa, number of individuals, Margalef species richness, Pielou evenness, and Shannon–Wiener diversity) and the physicochemical determination of sediments (%fines, TOC, nitrate, ammonium, ammonia, ammoniacal nitrogen, metalloids, and SEM/AVSs). The results show that the wastewater treatment plant was the most important source of pollution. A factory was also detected as a source of contamination, with related adverse effects having been measured downstream. Other sources of contamination and stress were detected in the studied area. The macro-benthic identification study identified three different sentinel species (Tanytarsus sp., Crytochironomus sp., and Polypedilum sp.) for future monitoring assessments of the sediment quality in riverine areas. Thus, an improvement in the management of river effluents and more measures focused on cutting contaminant emissions from the waste treatment plant are recommended. Full article

Mitochondrial genomics, as a useful marker for phylogenetics and systematics of organisms, are important for molecular biology studies. The phylogenetic relationships of the Polypedilum generic complex remains controversial, due to lack taxonomy and molecular information. In this study, we newly sequenced mitogenomes of 14 species of the Polypedilum generic complex. Coupled with three recently published sequences, we analyzed the nucleotide composition, sequence length, and evolutionary rate of this generic complex. The control region showed the highest AT content. The evolution rate of protein coding genes was as follows: ATP8 > ND6 > ND5 > ND3 > ND2 > ND4L > ND4 > COX1 > ND1 > CYTB > APT6 > COX2 > COX3. We reconstructed the phylogenetic relationships among the genera within the Polypedilum generic complex based on 19 mitochondrial genomes (seventeen ingroups and two outgroups), using Bayesian Inference (BI) and Maximum Likelihood (ML) methods for all databases. Phylogenetic analysis of 19 mitochondrial genomes demonstrated that the Endochironomus + Synendotendipes was sister to Phaenopsectra + Sergentia. Full article

We analyzed the dietary composition of Polypedilum larvae among two contrasting habitats (river and weir). Our approach was (i) to apply eDNA-based sampling to reveal the gut content of the chironomid larvae, (ii) the diversity of gut contents in the two aquatic habitats, and (iii) assessment of habitat sediment condition with the food sources in the gut. The most abundant food was Chlorophyta in the gut of the river (20%) and weir (39%) chironomids. The average ratio of fungi, protozoa, and zooplankton in river chironomids gut was 5.9%, 7.2%, and 3.8%, while it was found decreased to 1.2%, 2.5%, and 0.1% in weir chironomids. Aerobic fungi in river midge guts were 3.6% and 10.34% in SC and IS, while they were in the range of 0.34–2.58% in weir midges. The hierarchical clustering analysis showed a relationship of environmental factors with food contents. Abiotic factors (e.g., pH) in the river and weir habitats correlated the clustered pattern with phytoplankton and minor groups of fungi. This study could help understand the food source diversity in the chironomid and habitat environmental conditions by using eDNA metabarcoding as an effective tool to determine dietary composition. Full article

Anhydrobiosis, an ametabolic dehydrated state triggered by water loss, is observed in several invertebrate lineages. Anhydrobiotes revive when rehydrated, and seem not to suffer the ultimately lethal cell damage that results from severe loss of water in other organisms. Here, we review the biochemical and genomic evidence that has revealed the protectant molecules, repair systems, and maintenance pathways associated with anhydrobiosis. We then introduce two lineages in which anhydrobiosis has evolved independently: Tardigrada, where anhydrobiosis characterizes many species within the phylum, and the genus Polypedilum, where anhydrobiosis occurs in only two species. Finally, we discuss the complexity of the evolution of anhydrobiosis within invertebrates based on current knowledge, and propose perspectives to enhance the understanding of anhydrobiosis. Full article

Chironomids show a wide distribution and can occupy several habitats due to their high adaptive capacity in different freshwater environments. The genus Polypedilum is found along a wide elevational and environmental gradient in the neotropics, and its genetic variability could help to elucidate factors determining its distribution and tolerance to the environmental changes of different species or populations. This study examines the genetic variability of Polypedilum in an important biogeographic area that acts as a geographical barrier of biodiversity at the border of the Choco and Tumbes biomes. We identified five Polypedilum morphotypes using classic taxonomic methods. We examined 68 Polypedilum individuals from eight sampling sites in El Oro Province, Ecuador, analyzing the putative molecular species using the cytochrome c oxidase subunit 1 (CO1) mitochondrial gene fragment. Then, we calculated molecular diversity indices, Haplotype diversity (Hd), and θs and θπ estimators. Seven Polypedilum OTUs were determined from which a high molecular diversity was registered. A CCA was conducted to understand the population composition in relation to environmental characteristics. Results indicated that dissolved oxygen and temperature are the main environmental factors affecting Polypedilum distribution across elevational gradients and between basins. Full article

Different types of water bodies in lowland river floodplains represent vital biodiversity havens and encompass diverse microhabitats, which are essential for structuring different macroinvertebrate communities. Chironomidae larvae (Diptera) are an inseparable part of these communities, with their high richness and abundance. In three water body types within the Danube floodplain Kopački Rit in Croatia, over the course of four sampling campaigns, we recorded 51 chironomid taxa in periphyton on macrophytes, twigs, and glass slides. The most diverse were chironomid communities on macrophytes, whilst month-old periphyton on twigs supported the least taxa. Cricotopus gr. sylvestris, Dicrotendipes lobiger, Dicrotendipes spp., Endochironomus albipennis, Glyptotendipes pallens agg., Polypedilum sordens and Polypedilum spp. were present in all studied microhabitats. The type of substrate is a very important factor influencing Chironomidae diversity and abundance, which was evident in the presence and dominance of Corynoneura gr. scutellata and Monopelopia tenuicalcar in the dense macrophyte canopy epiphyton. Finding pristine floodplains such as Kopački Rit can be very challenging, as such areas are increasingly altered by human activities. Studies of resident species and the extent to which changes in the parent river influence floodplain communities are important for the protection and restoration of the floodplains. Full article

Anhydrobiosis, an adaptive ability to withstand complete desiccation, in the nonbiting midge Polypedilum vanderplanki, is associated with the emergence of new multimember gene families, including a group of 27 genes of late embryogenesis abundant (LEA) proteins (PvLea). To obtain new insights into the possible functional specialization of these genes, we investigated the expression and localization of PvLea genes in a P. vanderplanki-derived cell line (Pv11), capable of anhydrobiosis. We confirmed that all but two PvLea genes identified in the genome of P. vanderplanki are expressed in Pv11 cells. Moreover, PvLea genes are induced in Pv11 cells in response to anhydrobiosis-inducing trehalose treatment in a manner highly similar to the larvae of P. vanderplanki during the real induction of anhydrobiosis. Then, we expanded our previous data on PvLEA proteins localization in mammalian cells that were obtained using C-terminal fusions of PvLEA proteins and green fluorescent protein (GFP). We investigated PvLEA localization using N- and C-terminal fusions with GFP in Pv11 cells and the Sf9 insect cell line. We observed an inconsistency of PvLEA localization between different fusion types and different cell cultures, that needs to be taken into account when using PvLEA in the engineering of anhydrobiotic cell lines. Full article