Search Results (23)

Freshwater shrimps of the family Atyidae of New Guinea, including those from the Indonesian province of Papua, the Aru Islands, and the country of Papua New Guinea, are reviewed. A taxonomic synopsis is given to the 35 species identified so far, including two new species, namely Caridina iriana and C. yapenensis. Six species are recorded for the first time from New Guinea, namely Caridina mertoni, C. neglecta, C. brevicarpalis, C. endehensis, C. appendiculata, and C. cf. sikipozo. Seven landlocked species are found to be endemic to New Guinea, namely C. demani, C. cognata, C. fecunda, C. rouxi, C. buergersi C. elisabethae, and Parisia holthuisi. Biogeographically, apart from 11 species endemic to New Guinea, the majority of the amphidromous atyid shrimp species are found to be either restricted to the Island Chain of West Pacific (8 species) or restricted to the Indo-Australian Archipelago region, with New Guinea/Solomon Islands being the eastern and India/Sri Lanka being the western limits of their ranges (8 species), and five are restricted to the West Pacific, with Sulawesi/Philippines their western limit. Only three species are widely distributed in the Indo-West Pacific region. Descriptions/diagnoses for the new, taxonomically important or poorly known species, taxonomic discussions, habitat and distribution information for all species are presented. Full article

The dinoflagellate genus Heterocapsa includes several widely distributed and potentially toxic species associated with Harmful Algal Blooms (HABs), particularly affecting the Western Pacific Ocean. To reveal the biodiversity of Heterocapsa in Beibu Gulf, six strains were morphologically characterized using light and scanning electron microscopy, while large subunit rDNA (LSU rDNA) and internal transcribed spacer (ITS) were sequenced for phylogenetic analysis through maximum likelihood and Bayesian inferences. Two strains (BGERL169, BGERL170) were identified as Heterocapsa philippinensis ribotype I, three (BGERL171-BGERL173) as a new Heterocapsa philippinensis ribotype II, and one strain (BGERL174) as Heterocapsa pseudotriquetra. Cells of H. philippinensis were ovoid to spherical, yellowish-brown, with reticulate chloroplasts, and had a sausage-shaped nucleus positioned longitudinally along the dorsal side of the cell, and the theca was arranged in Po, cp, X, 5′, 3a, 7″, 6c, 5s, 5‴, 2⁗. Additionally, BGERL169 and BGERL171 showed no hemolytic toxicity in rabbit erythrocyte lysis assays. To the best of our knowledge, this research provides the first morphological and phylogenetic analysis of H. philippinensis, including the identification of a new ribotype, as well as the discovery of H. pseudotriquetra in Chinese waters. The findings contribute to the understanding of Heterocapsa species biogeography and toxicity in Chinese waters, offering valuable data for future HAB monitoring in Beibu Gulf. Full article

Marine ecosystems are important in discovering novel fungi with interesting metabolites that have shown great potential in pharmaceutical and biotechnological industries. Seagrasses, the sole submerged marine angiosperm, host diverse fungal taxa with mostly unknown metabolic capabilities. They are considered to be one of the least studied marine fungal habitats in the world. This review gathers and analyzes data from studies related to seagrasses-associated fungi, including taxonomy and biogeography, and highlights existing research gaps. The significance of the seagrass–fungal associations remains largely unknown, and current understanding of fungal diversity is limited to specific geographical regions such as the Tropical Atlantic, Mediterranean, and Indo-Pacific. Our survey yielded 29 culture-dependent studies on seagrass-associated endophytic and epiphytic fungi, and 13 miscellaneous studies, as well as 11 meta-studies, with no pathogenic true fungi described. There is a significant opportunity to expand existing studies and conduct multidisciplinary research into novel species and their potential applications, especially from understudied geographical locations. Future research should prioritize high-throughput sequencing and mycobiome studies, utilizing both culture-dependent and -independent approaches to effectively identify novel seagrass-associated fungal taxa. Full article

We present a meta-analysis of mangrove litterfall across 58 sites in the American Pacific, exploring its variability among geoforms, ecoregions, and provinces. This study contributes to filling the information gap on litter-based primary productivity in American mangroves at the ecoregional level and directly examines the effects of geomorphological and biogeographic factors on mangrove productivity. The objective was to evaluate how geoform, ecoregion, and province factors, along with eight environmental variables, influence litterfall-based primary productivity. Each site was categorized according to its landform through the analysis of satellite images obtained from various sensors on the Google Earth Pro v. 7.3.6 platform. Additionally, it was categorized according to its ecoregion and province by analyzing the occurrence of the sites on biogeographic unit coverage in ArcMap 10.4.1. We then analyzed the effect of each factor and the efficiency of categorization using multivariate methods. Our results showed significant differences in litterfall among the geoforms, with estuaries exhibiting higher litterfall production (11.90 Mg ha⁻¹ year⁻¹) compared to lagoons (7.49 ± 4.13 Mg ha⁻¹ year⁻¹). Differences were also observed among provinces, with the highest average in the Tropical Eastern Pacific (11.19 ± 3.63 Mg ha⁻¹ year⁻¹) and the lowest in the Warm Temperate Northeast Pacific (7.34 ± 4.28 Mg ha⁻¹ year⁻¹). Allocation success analyses indicated that sites classified by dominant species and province were more predictable (>60.34%) for litterfall production. Additionally, the maximum temperature and the precipitation of the wettest month and the driest month explained 34.13% of the variability in mangrove litter-based primary productivity. We conclude that mangrove litterfall production is influenced by coastal geomorphic characteristics and biogeography, which are, in turn, affected by latitude-induced climate variation. Full article

We document aggregations of an undescribed benthic solitary tunicate of the family Pyuridae from the Arabian Sea. This new genus was found forming dense thickets in shallow rocky substrates around Masirah Island and the Dhofar area in Oman. Such aggregations of tunicates have not been reported before from coral reefs in the Indo-West Pacific region and the Atlantic. This observation contributes to our understanding of the ecology and biogeography of ascidians, setting the stage for a comprehensive species description and in-depth analysis of this species. Full article

The widespread perception of New Zealand is of a group of remote islands dominated by reptiles and birds, with no native mammals except a few bats. In fact, the islands themselves are only part of a wider New Zealand Region which includes a large section of Antarctica. In total, the New Zealand Region has at least 63 recognised taxa (species, subspecies and distinguishable clades) of living native mammals, only six of which are bats. The rest comprise a large and vigorous assemblage of 57 native marine mammals (9 pinnipeds and 48 cetaceans), protected from human knowledge until only a few centuries ago by their extreme isolation in the southwestern Pacific Ocean. Even after humans first began to colonise the New Zealand archipelago in about 1280 AD, most of the native marine mammals remained unfamiliar because they are seldom seen from the shore. This paper describes the huge contrast between the history and biogeography of the tiny fauna of New Zealand’s native land mammals versus the richly diverse and little-known assemblage of marine mammals. Full article

We document the benthic ctenophores Coeloplana sp. and Vallicula multiformis from Oman, extending their geographic range. A new Coeloplana species was found forming aggregations on gorgonians of two octocoral host genera, Melithaea and Euplexaura, representing associations previously unknown to occur in the Indo-West Pacific region. Our findings also illustrate the concurrent presence of the ectocommensal ophiuroid Ophiothela mirabilis, which adversely affects other Coeloplana species in the tropical West Atlantic, where it is considered invasive. This exploration contributes to our understanding of the biogeography, species distribution, and ectosymbiotic associations of these genera, setting the stage for a comprehensive species description and in-depth analysis of host relationships in future studies. Full article

The genus Amphidinium Clap. & J. Lachm. comprises a high diversity of planktonic and benthic (epiphytic and sand-dwelling) dinoflagellates from marine and freshwater ecosystems. High morphological plasticity and vaguely defined genus characteristics (e.g., a small epicone size) have complicated the clear delineation of species boundaries. Although six Amphidinium morphospecies have been reported from Mexican coastal waters, species identifications are uncertain and not generally supported by molecular phylogenetic data. In this study, seven isolates of Amphidinium from diverse benthic coastal locations on the NE Pacific, Gulf of California, and southern Gulf of Mexico were subjected to critical morphological analysis using photonic and scanning electron microscopy. The phylogenetic reconstruction was based on nuclear-encoded, partial large-subunit (LSU) rDNA and internal transcribed spacer I and II (ITS1 and ITS2) sequences. The revised phylogenetic analysis was consistent with the traditional subdivision of the genus Amphidinium into two sister groups: Herdmanii and Operculatum clades. This study provided the first confirmed records of A. theodorei and A. massartii from coastal waters of Mexico. The molecular phylogenetic evidence indicated that the morphologically described A. cf. carterae from Baja California was in fact more closely allied with A. eilatiensis sequences. A few Amphidinium species are known to form toxigenic (i.e., fish-killing) harmful algal blooms worldwide, and therefore knowledge on species diversity and biogeography is critical in developing effective strategies for evaluating the potential emerging threat in Mexican coastal waters. Full article

Some cephalopods are important fishery resources, with some major economic species living in pelagic waters, possessing short life history cycles, and responding strongly to environmental changes. The analysis of cephalopod community species composition, catch distribution, and their relationship with environmental factors in important marine areas can provide a basic reference for cephalopod biogeography and resource development and utilization. In this study, based on the cephalopod survey data in the spring of 2015 and summer of 2016 in the Pacific Ocean, we analyzed the cephalopod species composition, diversity index (the Margalef richness index, Shannon–Wiener diversity index, and Pielou uniformity index), main contributing species, and catch distribution in the two seasons of spring and summer in the Pacific Ocean. We also analyzed the relationship between cephalopod catch, each diversity index, and environmental factors in each season using the GAM model. The results show that 18 species of cephalopods were captured in the spring and summer, the Margalef richness index, Shannon–Wiener diversity index, and Pielou uniformity index in summer was higher than that in spring; the average catch biomass in spring was significantly higher than that in summer. The main contributing species in spring was Todarodes pacificus, while the main contributing species in summer was Ommastrephes bartramii. The interaction of the “longitude” and “latitude” has a great impact on cephalopod catch biomass in spring, and “sea surface temperature” has a great impact on cephalopod catch biomass in summer. The results of the study can provide a basic reference for the study of cephalopod diversity and resource development and utilization in the Pacific Ocean. Full article

Panstrongylus is a Neotropical taxa of 16 species, some more widespread than others, that act as vectors of Trypanosoma cruzi, the etiologic agent of Chagas disease (CD). This group is associated with mammalian reservoir niches. There are few studies of the biogeography and niche suitability of these triatomines. Using zoo-epidemiological occurrence databases, the distribution of Panstrongylus was determined based on bioclimatic modelling (DIVA GIS), parsimonious niche distribution (MAXENT), and parsimony analysis of endemic species (PAE). Through 517 records, a wide presence of P. geniculatus, P. rufotuberculatus, P. lignarius, and P. megistus was determined and recorded as frequent vectors of T. cruzi in rainforest habitats of 24–30 °C. These distributions were modeled with AUC >0.80 and <0.90, as well as with the seasonality of temperature, isothermality, and precipitation as relevant bioclimatic variables. Individual traces for each taxon in Panstrongylus—1036 records—showed widely dispersed lines for frequent vectors P. geniculatus, P. lignarius, P. rufotuberculatus, and P. megistus. Other occasional vectors showed more restricted dispersal, such as P. howardi, P. humeralis, P. lenti, P. lutzi, P. tupynambai, P. noireaiui, and P. chinai. Areas of defined environmental variation, geological change, and trans domain fluid fauna, such as the American Transition Zone and the Pacific Domain of Morrone, had the highest Panstrongylus diversity. Pan-biogeographic nodes appear to be areas of the greatest species diversity that act as corridors connecting biotopes and allowing fauna migration. Vicariance events in the geologic history of the continent need to be investigated. The geographical distribution of Panstrongylus overlapped with CD cases and Didelphis marsupialis/Dasypus novemcinctus presence, two important reservoirs in Central and South America. The information derived from the distribution of Panstrongylus provides knowledge for surveillance and vector control programs. It would increase information on the most and less relevant vector species of this zoonotic agent, for monitoring their population behavior. Full article

Chitons (Polyplacophora) are marine molluscs that mostly inhabit rocky intertidal shores. Their biological and phylogenetic studies are comparatively sparse in the western Indo-Pacific regions. In addition, chitons belonging to the subfamily Acanthopleurinae Dall, 1889, collected from the Andaman Sea of the northeastern Indian Ocean and the Jizan coast of Saudi Arabia were sequenced and analyzed to study the phylogenetic affinities. The analysis was carried out using a single locus dataset (cytochrome oxidase 1) generated during the present study and integrated with sequences retrieved from GenBank. Acanthopleura gemmata (Blainville, 1825) from India was linked to Acanthopleura vaillantii Rochebrune, 1882, from the Saudi Arabia coast. Squamopleura miles (Carpenter in Pilsbry, 1893) from the Indian coast forms a separate clade representing the genus. Furthermore, the results illustrate several significant instances of misplacement of several species under the wrong genus and the existence of cryptic species within the genera Acanthopleura and Squamopleura. An integrated approach is required to better understand these important intertidal groups’ taxonomy, systematics, and biogeography. Full article

Ariidae (sea catfishes) is one of the two catfish (Siluriformes) families that occur frequently in tropical marine and estuarine waters. There are at least 130 ariid species worldwide, but when samples are carefully studied, they tend to yield cryptic new species, given the group´s extremely conservative morphology. Mouth brooding is one of the synapomorphies of the family and is, consequently, responsible for the strong speciation within the group. Sea catfishes comprise two subfamilies: Galeichthyinae, including Galeichthys peruvianus, which live mainly in South Africa; G. peruvianus is endemic to Peru; and is, therefore, an interesting biogeographic enigma. The subfamily Ariinae, on the other hand, occurs along the family distribution, inhabiting continental tropical shores influenced by freshwater and with abundant mangrove development. The closing of the Tethys Sea sharply separated the Ariinae into two geographic groups that do not share any genus. The Old World, including African, Asian, and Australian–New Guinean waters, comprises almost 30 genera and 60 species. Eleven genera and at least 70 species are known from the New World. Seven genera and forty-one species occur in the Tropical Eastern Pacific, while from the Caribbean, eight genera and thirty species are known. The main New World regions where sea catfish species are concentrated are the Panama Bight, including Southern Caribbean, and the area between the mouths of the Orinoco and Amazon rivers. Full article

The ecology of the mesopelagic fish genus Trachipterus, which is rarely found in oceans, remains unclear. In this study, we found 22 eggs of T. trachypterus and T. jacksonensis around the Ulleung Basin of the East/Japan Sea during ichthyoplankton surveys from 2019 to 2021. The eggs were identified through genetic relationships with the genus Trachipterus based on partial sequences (COI and 16S) or concatenated sequences of 13 protein-coding genes and 2 rRNA genes of mitochondrial DNA. T. trachypterus eggs were discovered in all seasons, but more frequently during the winter. One T. jacksonensis egg that appeared during the autumn was the first in the northwestern Pacific Ocean. Identifying Trachipterus pelagic eggs would provide insight into their spawning ecology and biogeography. Full article

A broad-scale comparative phylogeographic and phylogenetic study of pennah croakers, mainly Pennahia anea, P. macrocephalus, and P. ovata was conducted to elucidate the mechanisms that may have driven the diversification of marine organisms in Southeast Asian waters. A total of 316 individuals from the three species, and an additional eight and six individuals of P. argentata and P. pawak were employed in this study. Two genetically divergent lineages each of P. argentata and P. anea (lineages L1 and L2) were respectively detected from the analyses based on mitochondrial cytochrome b gene data. Historical biogeography analysis with a multi-gene dataset revealed that Pennahia species most likely originated in the South China Sea and expanded into the eastern Indian Ocean, East China Sea, and northwestern Pacific Ocean through three separate range expansions. The main diversifications of Pennahia species occurred during Miocene and Pliocene periods, and the occurrences of lineage divergences within P. anea and P. argentata were during the Pleistocene, likely as a consequence of cyclical glaciations. The population expansions that occurred after the sea level rise might be the reason for the population homogeneity observed in P. macrocephalus and most P. anea L2 South China Sea populations. The structure observed between the two populations of P. ovata, and the restricted distributions of P. anea lineage L1 and P. ovata in the eastern Indian Ocean, might have been hampered by the northward flowing ocean current at the Malacca Strait and by the distribution of coral reefs or rocky bottoms. While our results support S. Ekman’s center-of-origin hypothesis taking place in the South China Sea, the Malacca Strait serving as the center of overlap is a supplementary postulation for explaining the present-day high diversity of pennah croakers centered in these waters. Full article

The Western Pacific is the most oligotrophic sea on Earth, with numerous seamounts. However, the plankton diversity and biogeography of the Western Pacific in general and the seamount regions in particular remains largely unexplored. In this project, we quantitatively analyzed the composition and distribution patterns of plankton species in the Western Pacific seamount regions by applying metabarcoding analysis. We identified 4601 amplicon sequence variants (ASVs) representing 34 classes in seven protist phyla/divisions in the Western Pacific seamount regions, among which Dinoflagellata was by far the most dominant division. Among the 336 annotated phytoplankton species (including species in Dinoflagellata), we identified 36 harmful algal bloom (HAB) species, many of which displayed unique spatial distribution patterns in the Western Pacific seamount regions. This study was the first attempt in applying ASV-based metabarcoding analysis in studying phytoplankton and HAB species in the Western Pacific seamount regions, which may facilitate further research on the potential correlation between HABs in the Western Pacific seamount regions and coastal regions. Full article