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Keywords = Orobanchaceae family

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16 pages, 5080 KiB  
Article
Exploring the Therapeutic Potential of Rehmannia glutinosa: A Network Pharmacology and Molecular Docking Analysis Across Multiple Diseases
by Jinyoung Park, Muhammad Yasir, Eun-Taek Han, Jin-Hee Han, Won Sun Park, Jongseon Choe and Wanjoo Chun
Curr. Issues Mol. Biol. 2025, 47(5), 329; https://doi.org/10.3390/cimb47050329 - 3 May 2025
Viewed by 928
Abstract
Rehmannia glutinosa (RG), a fundamental herb in traditional Chinese medicine belonging to the Orobanchaceae family, has been widely used for centuries due to its diverse therapeutic properties, including promoting blood circulation, enhancing immunity, managing diabetes, reducing inflammation, and supporting kidney function. Despite its [...] Read more.
Rehmannia glutinosa (RG), a fundamental herb in traditional Chinese medicine belonging to the Orobanchaceae family, has been widely used for centuries due to its diverse therapeutic properties, including promoting blood circulation, enhancing immunity, managing diabetes, reducing inflammation, and supporting kidney function. Despite its traditional significance, scientific studies on RG’s therapeutic mechanisms remain limited, and its underlying pharmacological pathways are not extensively elucidated. This study employed network pharmacology and molecular docking to identify RG’s active compounds and investigate their therapeutic potential in allergy, anemia, diabetes, and menopause. From an initial pool of 122 compounds, 50 bioactive compounds were screened based on bioavailability and drug-likeness, resulting in 40 active compounds and 11 target proteins closely associated with these conditions. Key active compounds identified included iridoid glycosides (rehmaglutin A, B, C, D, jioglutin A, B, C, jioglutolide) and other bioactive molecules such as caffeic acid, geraniol, 5-hydroxytryptamine, melatonin, and rhodioloside. Molecular docking technology was employed to verify the stable binding of target proteins with active compounds. Protein–protein interaction (PPI) analysis revealed that RG’s core target proteins are central to pathways regulating inflammation, cell survival, apoptosis, and immune response. Enrichment analyses demonstrated that RG’s target proteins intersect significantly with pathways including the AGE-RAGE signaling pathway in diabetic complications, IL-17, HIF-1 signaling, and neuroactive ligand-receptor interactions, all of which are essential in managing diabetes and menopause symptoms. These findings underscore RG’s multi-target therapeutic potential, particularly in modulating immunity, metabolism, and inflammation. This study highlights RG’s potential as a therapeutic agent and provides a framework for future research to further elucidate its mechanisms and support the development of targeted drugs based on RG’s active compounds. Full article
(This article belongs to the Section Bioinformatics and Systems Biology)
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14 pages, 2614 KiB  
Article
Identification of Bioactive Compounds from the Roots of Rehmannia glutinosa and Their In Silico and In Vitro AMPK Activation Potential
by Hwaryeong Lee, Isoo Youn, Sang Gyun Noh, Hyun Woo Kim, Eunhye Song, Sang-Jip Nam, Hae Young Chung and Eun Kyoung Seo
Molecules 2024, 29(24), 6009; https://doi.org/10.3390/molecules29246009 - 20 Dec 2024
Viewed by 1537
Abstract
Rehmannia glutinosa Libosch., which belongs to the Orobanchaceae family, is a perennial herb found in China, Japan, and Korea. In traditional medicine, it is used to cool the body, improve water metabolism in the kidney, and provide protection from metabolic diseases such as [...] Read more.
Rehmannia glutinosa Libosch., which belongs to the Orobanchaceae family, is a perennial herb found in China, Japan, and Korea. In traditional medicine, it is used to cool the body, improve water metabolism in the kidney, and provide protection from metabolic diseases such as type 2 diabetes mellitus (T2DM) and obesity. In this study, three new compounds were isolated from the roots of R. glutinosa, along with eighteen known compounds. Structure elucidation was performed with spectroscopic analyses including nuclear magnetic resonance (NMR) and circular dichroism (CD) spectroscopy. As the AMP-activated protein kinase (AMPK) signaling pathway is reportedly related to metabolic diseases, AMPK activation studies were conducted using in silico simulations and in vitro assays. Among the isolated compounds, 1 showed a potential as an AMPK activator in both in silico simulations and in vitro experiments. Our findings expand the chemical profiles of the plant R. glutinosa and suggest that one newly found compound (1) activates AMPK. Full article
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18 pages, 5796 KiB  
Article
Revealing the Dynamic History of Parasitic Plant Plastomes via Structural Characterization, Comparative Analysis, and Phylogenomics
by Lubna, Sajjad Asaf, Rahmatullah Jan, Saleem Asif, Saqib Bilal, Kyung-Min Kim, In-Jung Lee and Ahmed AL-Harrasi
Genes 2024, 15(12), 1577; https://doi.org/10.3390/genes15121577 - 8 Dec 2024
Viewed by 1377
Abstract
Background: The shift to a parasitic lifestyle in plants often leaves distinct marks on their plastid genomes, given the central role plastids play in photosynthesis. Studying these unique adaptations in parasitic plants is essential for understanding the mechanisms and evolutionary patterns driving plastome [...] Read more.
Background: The shift to a parasitic lifestyle in plants often leaves distinct marks on their plastid genomes, given the central role plastids play in photosynthesis. Studying these unique adaptations in parasitic plants is essential for understanding the mechanisms and evolutionary patterns driving plastome reduction in angiosperms. By exploring these changes, we can gain deeper insights into how parasitism reshapes the genomic architecture of plants. Method: This study analyzed and compared the plastomes of 113 parasitic plants from different families. Results: The Orobanchaceae family (hemiparasitic plants) displayed the largest plastome size, while Apodanthaceae exhibited the shortest. Additionally, Orobanchaceae showcased little to no gene loss in their plastomes. However, holoparasitic species typically had reduced plastome sizes. Convolvulaceae exhibited significantly reduced plastome sizes due to high gene loss, and Apodanthaceae retained only a few genes. Gene divergence among different families was also investigated, and rps15, rps18, and rpl33 in Orobanchaceae; accD and ycf1 in Convolvulaceae; atpF and ccsA in Loranthaceae; and rpl32 in Santalaceae showed greater divergence. Additionally, Orobanchaceae had the highest numbers of all repeat types, whereas Loranthaceae and Convolvulaceae exhibited the lowest repeat numbers. Similarly, more simple sequence repeats were reported in Loranthaceae and Santalaceae. Our phylogenetic analysis also uncovered a distinct clade comprising Loranthaceae, with a single Schoepfiaceae species clustering nearby. Contrary to expectations, parasitic and hemiparasitic plants formed mixed groupings instead of segregating into separate clades. Conclusions: These findings offer insights into parasitic plants’ evolutionary relationships, revealing shared and divergent genomic features across diverse lineages. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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17 pages, 1853 KiB  
Article
Optimized Conditions for the Extraction of Phenolic Compounds from Aeginetia indica L. and Its Potential Biological Applications
by Nattira On-Nom, Sirinapa Thangsiri, Woorawee Inthachat, Piya Temviriyanukul, Yuraporn Sahasakul, Amornrat Aursalung, Chaowanee Chupeerach and Uthaiwan Suttisansanee
Molecules 2024, 29(5), 1050; https://doi.org/10.3390/molecules29051050 - 28 Feb 2024
Cited by 7 | Viewed by 1975
Abstract
Aeginetia indica L., a parasitic root in the Orobanchaceae family, is used as a food colorant in traditional Thai desserts. However, scant information is available on its food applications as well as medicinal properties, while overharvesting by the local people has severely depleted [...] Read more.
Aeginetia indica L., a parasitic root in the Orobanchaceae family, is used as a food colorant in traditional Thai desserts. However, scant information is available on its food applications as well as medicinal properties, while overharvesting by the local people has severely depleted wild plant populations. This research, thus, aimed to extract optimized total phenolic content (TPC) in varying extraction conditions using response surface methodology (RSM) and the Box–Behnken design (BBD). Results indicated that an extraction temperature of 90 °C, 80% (v/v) aqueous ethanol, and 0.5% (w/v) solid-to-liquid ratio yielded the highest TPC at 129.39 mg gallic acid equivalent (GAE)/g dry weight (DW). Liquid chromatography–electrospray ionization tandem mass spectrometry (LC-ESI-MS/MS) identified the predominant phenolics as apigenin (109.06 mg/100 g extract) and luteolin (35.32 mg/100 g extract) with trace amounts of naringenin and rutin. Under the optimal extraction condition, the plant extract exhibited antioxidant activities of 5620.58 and 641.52 µmol Trolox equivalent (TE)/g DW determined by oxygen radical absorbance capacity (ORAC) and ferric ion reducing antioxidant power (FRAP) assay, while the scavenging capacity of total radicals at 50% (SC50) was determined to be 135.50 µg/mL using 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging assay. The plant extract also exhibited inhibitory activities against the key enzymes relevant to type II diabetes, obesity, and Alzheimer’s disease, suggesting the potential for medicinal applications. Full article
(This article belongs to the Special Issue Extraction Methods of Active Compounds from Plants)
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18 pages, 4255 KiB  
Article
Comprehensive Analysis of the Complete Mitochondrial Genome of Rehmannia chingii: An Autotrophic Species in the Orobanchaceae Family
by Ying Han, Yan-Lei Feng, Jie Wang, Shan-Shan Zhu, Xin-Jie Jin, Zhi-Qiang Wu and Yong-Hua Zhang
Genes 2024, 15(1), 98; https://doi.org/10.3390/genes15010098 - 15 Jan 2024
Cited by 7 | Viewed by 2595
Abstract
Rehmannia chingii is an important medicinal plant with immense value in scientific research. However, its mitochondrial genome (mitogenome) has not yet been characterized. Herein, based on whole-genome Illumina short reads and PacBio HiFi reads, we obtained the complete mitogenome of R. chingii through [...] Read more.
Rehmannia chingii is an important medicinal plant with immense value in scientific research. However, its mitochondrial genome (mitogenome) has not yet been characterized. Herein, based on whole-genome Illumina short reads and PacBio HiFi reads, we obtained the complete mitogenome of R. chingii through a de novo assembly strategy. We carried out comparative genomic analyses and found that, in comparison with the plastid genome (plastome) showing a high degree of structural conservation, the R. chingii mitogenome structure is relatively complex, showing an intricate ring structure with 16 connections, owing to five repetitive sequences. The R. chingii mitogenome was 783,161 bp with a GC content of 44.8% and contained 77 genes, comprising 47 protein-coding genes (CDS), 27 tRNA genes, and 3 rRNA genes. We counted 579 RNA editing events in 47 CDS and 12,828 codons in all CDSs of the R. chingii mitogenome. Furthermore, 24 unique sequence transfer fragments were found between the mitogenome and plastome, comprising 8 mitogenome CDS genes and 16 plastome CDS genes, corresponding to 2.39% of the R. chingii mitogenome. Mitogenomes had shorter but more collinear regions, evidenced by a comparison of the organelles of non-parasitic R. chingii, hemiparasitic Pedicularis chinensis, and holoparasitic Aeginetia indica in the Orobanchaceae family. Moreover, from non-parasitic to holoparasitic species, the genome size in the mitogenomes of Orobanchaceae species did not decrease gradually. Instead, the smallest mitogenome was found in the hemiparasitic species P. chinensis, with a size of 225,612 bp. The findings fill the gap in the mitogenome research of the medicinal plant R. chingii, promote the progress of the organelle genome research of the Orobanchaceae family, and provide clues for molecular breeding. Full article
(This article belongs to the Special Issue Advances in Genetics and Genomics of Plants)
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15 pages, 1919 KiB  
Article
Genetic Structure and Diversity Analysis of Tunisian Orobanche spp. and Phelipanche spp. Using Molecular Markers
by Khalil Khamassi, Zouhaier Abbes, Eleni Tani, Anastasios Katsileros, Karim Guenni, Mustapha Rouissi, Sahari Khoufi, Ramzi Chaabane, Demosthenis Chachalis and Mohamed Kharrat
Appl. Sci. 2023, 13(21), 11622; https://doi.org/10.3390/app132111622 - 24 Oct 2023
Cited by 3 | Viewed by 1888
Abstract
Broomrapes (Orobanche and Phelipanche spp.) are non-achlorophyllous parasitic plants belonging to the Orobanchaceae family, with some species evolving to infest agricultural crops, causing substantial economic losses. This study focuses on Orobanche and Phelipenche species prevalent in Tunisia, particularly Orobanche crenata, Orobanche [...] Read more.
Broomrapes (Orobanche and Phelipanche spp.) are non-achlorophyllous parasitic plants belonging to the Orobanchaceae family, with some species evolving to infest agricultural crops, causing substantial economic losses. This study focuses on Orobanche and Phelipenche species prevalent in Tunisia, particularly Orobanche crenata, Orobanche foetida and Phelipanche ramosa, which pose a significant threat to legume crops and other agronomically important plants. These parasitic species cause severe damage before their aboveground appearance, making early detection and management crucial. Successful breeding programs targeting their hosts necessitate a comprehensive understanding of the genetic variability within different broomrape populations. A plethora of molecular markers, including RAPD, ISSR, AFLP, SSR and SNPs, were employed to evaluate the genetic diversity of Orobanche spp., mainly in Mediterranean countries. This research seeks to analyze the genetic variability and structure of thirty-four (34) Tunisian Orobanche and Phelipanche populations infesting various crops and wild plants. The results demonstrated a higher genetic differentiation within populations rather than between populations and no clear differentiation based on the geographic origins of the populations. By measuring the genetic diversity of a large number of broomrape populations that affect both wild species and crops, this study aims to support efforts toward establishing effective management approaches. Full article
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23 pages, 923 KiB  
Review
Characteristics, Isolation Methods, and Biological Properties of Aucubin
by Kartini Kartini, Michelle Abigail Irawan, Finna Setiawan and Nikmatul Ikhrom Eka Jayani
Molecules 2023, 28(10), 4154; https://doi.org/10.3390/molecules28104154 - 17 May 2023
Cited by 15 | Viewed by 4802
Abstract
Aucubin is an iridoid glycoside widely spread in the families Cornaceae, Garryaceae, Orobanchaceae, Globulariaceae, Eucommiaceae, Scrophulariaceae, Plantaginaceae, and Rubiaceae. This review is intended to provide data on the physicochemical characteristics, isolation methods, and biological activities [...] Read more.
Aucubin is an iridoid glycoside widely spread in the families Cornaceae, Garryaceae, Orobanchaceae, Globulariaceae, Eucommiaceae, Scrophulariaceae, Plantaginaceae, and Rubiaceae. This review is intended to provide data on the physicochemical characteristics, isolation methods, and biological activities of aucubin and its producing plants. Aucubin is unstable and can be deglycosylated into its aglycone, aucubigenin. Various chromatographic methods (column chromatography, vacuum liquid chromatography, medium pressure liquid chromatography, and high-performance liquid chromatography) have been used together to isolate aucubin, mainly with the stationary phase C-18 and the mobile phase water–methanol solution made in gradients. In vitro and in vivo studies reveal that aucubin has a wide range of activities, including anti-inflammatory, antioxidant, anxiolytic and antidepressant, antidiabetic, antifibrotic, antimicrobial, anticancer, antihyperlipidemic, gastroprotective, cardioprotective, hepatoprotective, retinoprotective, neuroprotective, osteoprotective, and renoprotective. Even though aucubin has been extensively investigated, further research in humans is urgently needed primarily to substantiate the clinical evidence. Moreover, extensive studies on its drug delivery systems will help maximize efficacy and minimize side effects. Full article
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13 pages, 1104 KiB  
Review
Host Resistance to Parasitic Plants—Current Knowledge and Future Perspectives
by Ivanela A. Albanova, Lyuben I. Zagorchev, Denitsa R. Teofanova, Mariela K. Odjakova, Lyudmila I. Kutueva and Vasily V. Ashapkin
Plants 2023, 12(7), 1447; https://doi.org/10.3390/plants12071447 - 25 Mar 2023
Cited by 12 | Viewed by 4757
Abstract
Parasitic flowering plants represent a diverse group of angiosperms, ranging from exotic species with limited distribution to prominent weeds, causing significant yield losses in agricultural crops. The major damage caused by them is related to the extraction of water and nutrients from the [...] Read more.
Parasitic flowering plants represent a diverse group of angiosperms, ranging from exotic species with limited distribution to prominent weeds, causing significant yield losses in agricultural crops. The major damage caused by them is related to the extraction of water and nutrients from the host, thus decreasing vegetative growth, flowering, and seed production. Members of the root parasites of the Orobanchaceae family and stem parasites of the genus Cuscuta are among the most aggressive and damaging weeds, affecting both monocotyledonous and dicotyledonous crops worldwide. Their control and eradication are hampered by the extreme seed longevity and persistence in soil, as well as their taxonomic position, which makes it difficult to apply selective herbicides not damaging to the hosts. The selection of resistant cultivars is among the most promising approaches to deal with this matter, although still not widely employed due to limited knowledge of the molecular mechanisms of host resistance and inheritance. The current review aims to summarize the available information on host resistance with a focus on agriculturally important parasitic plants and to outline the future perspectives of resistant crop cultivar selection to battle the global threat of parasitic plants. Full article
(This article belongs to the Section Plant Protection and Biotic Interactions)
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16 pages, 2423 KiB  
Article
Cistanche Species Mitogenomes Suggest Diversity and Complexity in Lamiales-Order Mitogenomes
by Yujing Miao, Haimei Chen, Wanqi Xu, Chang Liu and Linfang Huang
Genes 2022, 13(10), 1791; https://doi.org/10.3390/genes13101791 - 4 Oct 2022
Cited by 12 | Viewed by 2634
Abstract
The extreme diversity and complexity of angiosperms is well known. Despite the fact that parasitic plants are angiosperms, little is known about parasitic plant mitogenomic diversity, complexity, and evolution. In this study, we obtained and characterized the mitogenomes of three Cistanche species (holoparasitic [...] Read more.
The extreme diversity and complexity of angiosperms is well known. Despite the fact that parasitic plants are angiosperms, little is known about parasitic plant mitogenomic diversity, complexity, and evolution. In this study, we obtained and characterized the mitogenomes of three Cistanche species (holoparasitic plants) from China to compare the repeats, segment duplication and multi-copy protein-coding genes (PCGs), to clarify the phylogenetic and evolution relationship within the Lamiales order, and to identify the mitochondrial plastid insertions (MTPT) in Cistanche mitogenomes. The results showed that the mitogenome sizes of the three Cistanche species ranged from 1,708,661 to 3,978,341 bp. The Cistanche species genome encodes 75–126 genes, including 37–65 PCGs, 31–58 tRNA genes and 3–5 rRNA genes. Compared with other Lamiales and parasitic species, the Cistanche species showed extremely high rates of multi-copy PCGs, ranging from 0.13 to 0.58 percent of the total number of PCGs. In addition, 37–133 Simple Sequence Repeat (SSRs) were found in these three mitogenomes, the majority of which were the mononucleotides Adenine/Thymine. The interspersed repeats contained forward and palindromic repeats. Furthermore, the segment-duplication sequence size ranged from 199,584 to 2,142,551 bp, accounting for 24.9%, 11.7% and 53.9% of the Cistanche deserticola, Cistanche salsa and Cistanche tubulosa mitogenome, respectively. Furthermore, the Ka/Ks analysis suggested that the atp4, ccmB, ccmFc and matR were probably positively selected during Lamiales evolution. The Cistanche plastome suggested the presence of MTPT. Moreover, 6–12 tRNA, 9–15 PCGs fragments and 3 rRNA gene fragments in the Cistanche mitogenomes were found in the MTPT regions. This work reports the Cistanche species mitogenome for the first time, which will be invaluable for study the mitogenome evolution of Orobanchaceae family. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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16 pages, 5858 KiB  
Article
A New Formulation for Strigolactone Suicidal Germination Agents, towards Successful Striga Management
by Muhammad Jamil, Jian You Wang, Djibril Yonli, Rohit H. Patil, Mohammed Riyazaddin, Prakash Gangashetty, Lamis Berqdar, Guan-Ting Erica Chen, Hamidou Traore, Ouedraogo Margueritte, Binne Zwanenburg, Satish Ekanath Bhoge and Salim Al-Babili
Plants 2022, 11(6), 808; https://doi.org/10.3390/plants11060808 - 18 Mar 2022
Cited by 24 | Viewed by 3943
Abstract
Striga hermonthica, a member of the Orobanchaceae family, is an obligate root parasite of staple cereal crops, which poses a tremendous threat to food security, contributing to malnutrition and poverty in many African countries. Depleting Striga seed reservoirs from infested soils is [...] Read more.
Striga hermonthica, a member of the Orobanchaceae family, is an obligate root parasite of staple cereal crops, which poses a tremendous threat to food security, contributing to malnutrition and poverty in many African countries. Depleting Striga seed reservoirs from infested soils is one of the crucial approaches to minimize subterranean damage to crops. The dependency of Striga germination on the host-released strigolactones (SLs) has prompted the development of the “Suicidal Germination” strategy to reduce the accumulated seed bank of Striga. The success of aforementioned strategy depends not only on the activity of the applied SL analogs, but also requires suitable application protocol with simple, efficient, and handy formulation for rain-fed African agriculture. Here, we developed a new formulation “Emulsifiable Concentration (EC)” for the two previously field-assessed SL analogs Methyl phenlactonoate 3 (MP3) and Nijmegen-1. The new EC formulation was evaluated for biological activities under lab, greenhouse, mini-field, and field conditions in comparison to the previously used Atlas G-1086 formulation. The EC formulation of SL analogs showed better activities on Striga germination with lower EC50 and high stability under Lab conditions. Moreover, EC formulated SL analogs at 1.0 µM concentrations reduced 89–99% Striga emergence in greenhouse. The two EC formulated SL analogs showed also a considerable reduction in Striga emergence in mini-field and field experiments. In conclusion, we have successfully developed a desired formulation for applying SL analogs as suicidal agents for large-scale field application. The encouraging results presented in this study pave the way for integrating the suicidal germination approach in sustainable Striga management strategies for African agriculture. Full article
(This article belongs to the Special Issue Parasitic Weeds: Biology and Control)
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11 pages, 1400 KiB  
Article
Imazapic Herbigation for Egyptian Broomrape (Phelipanche aegyptiaca) Control in Processing Tomatoes—Laboratory and Greenhouse Studies
by Yaakov Goldwasser, Onn Rabinovitz, Zev Gerstl, Ahmed Nasser, Amit Paporisch, Hadar Kuzikaro, Moshe Sibony and Baruch Rubin
Plants 2021, 10(6), 1182; https://doi.org/10.3390/plants10061182 - 10 Jun 2021
Cited by 6 | Viewed by 3802
Abstract
Parasitic plants belonging to the Orobanchaceae family include species that cause heavy damage to crops in Mediterranean climate regions. Phelipanche aegyptiaca is the most common of the Orobanchaceae species in Israel inflicting heavy damage to a wide range of broadleaf crops, including processing [...] Read more.
Parasitic plants belonging to the Orobanchaceae family include species that cause heavy damage to crops in Mediterranean climate regions. Phelipanche aegyptiaca is the most common of the Orobanchaceae species in Israel inflicting heavy damage to a wide range of broadleaf crops, including processing tomatoes. P. aegyptiaca is extremely difficult to control due to its minute and vast number of seeds and its underground association with host plant roots. The highly efficient attachment of the parasite haustoria into the host phloem and xylem enables the diversion of water, assimilates and minerals from the host into the parasite. Drip irrigation is the most common method of irrigation in processing tomatoes in Israel, but the delivery of herbicides via drip irrigation systems (herbigation) has not been thoroughly studied. The aim of these studies was to test, under laboratory and greenhouse conditions, the factors involved in the behavior of soil-herbigated imazapic, and the consequential influence of imazapic on P. aegyptiaca and tomato plants. Dose-response Petri dish studies showed that imazapic does not impede P. aegyptiaca seed germination and non-attached seedlings, even at the high rate of 5000 ppb. Imazapic applied to tomato roots inoculated with P. aegyptiaca seeds in a PE bag system revealed that the parasite is killed only after its attachment to the tomato roots, at concentrations as low as 2.5 ppb. Imazapic sorption curves and calculated Kd and Koc values indicated that the herbicide Kd is similar in all soils excluding a two-fold higher coefficient in the Gadash farm soil, while the Koc was similar in all soils except the Eden farm soil, in which it was more than twofold lower. In greenhouse studies, control of P. aegyptiaca was achieved at >2.5 ppb imazapic, but adequate control requires repeated applications due to the 7-day half-life (t1/2) of the herbicide in the soil. Tracking of imazapic in soil and tomato roots revealed that the herbicide accumulates in the tomato host plant roots, but its movement to newly formed roots is limited. The data obtained in the laboratory and greenhouse studies provide invaluable knowledge for devising field imazapic application strategies via drip irrigation systems for efficient and selective broomrape control. Full article
(This article belongs to the Special Issue Parasitic Weeds: Biology and Control)
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12 pages, 2077 KiB  
Article
Complete Plastid and Mitochondrial Genomes of Aeginetia indica Reveal Intracellular Gene Transfer (IGT), Horizontal Gene Transfer (HGT), and Cytoplasmic Male Sterility (CMS)
by Kyoung-Su Choi and Seonjoo Park
Int. J. Mol. Sci. 2021, 22(11), 6143; https://doi.org/10.3390/ijms22116143 - 7 Jun 2021
Cited by 50 | Viewed by 4601
Abstract
Orobanchaceae have become a model group for studies on the evolution of parasitic flowering plants, and Aeginetia indica, a holoparasitic plant, is a member of this family. In this study, we assembled the complete chloroplast and mitochondrial genomes of A. indica. [...] Read more.
Orobanchaceae have become a model group for studies on the evolution of parasitic flowering plants, and Aeginetia indica, a holoparasitic plant, is a member of this family. In this study, we assembled the complete chloroplast and mitochondrial genomes of A. indica. The chloroplast and mitochondrial genomes were 56,381 bp and 401,628 bp long, respectively. The chloroplast genome of A. indica shows massive plastid genes and the loss of one IR (inverted repeat). A comparison of the A. indica chloroplast genome sequence with that of a previous study demonstrated that the two chloroplast genomes encode a similar number of proteins (except atpH) but differ greatly in length. The A. indica mitochondrial genome has 53 genes, including 35 protein-coding genes (34 native mitochondrial genes and one chloroplast gene), 15 tRNA (11 native mitochondrial genes and four chloroplast genes) genes, and three rRNA genes. Evidence for intracellular gene transfer (IGT) and horizontal gene transfer (HGT) was obtained for plastid and mitochondrial genomes. ψndhB and ψcemA in the A. indica mitogenome were transferred from the plastid genome of A. indica. The atpH gene in the plastid of A. indica was transferred from another plastid angiosperm plastid and the atpI gene in mitogenome A. indica was transferred from a host plant like Miscanthus siensis. Cox2 (orf43) encodes proteins containing a membrane domain, making ORF (Open Reading Frame) the most likely candidate gene for CMS development in A. indica. Full article
(This article belongs to the Section Molecular Plant Sciences)
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27 pages, 3360 KiB  
Review
The Effect of Virulence and Resistance Mechanisms on the Interactions between Parasitic Plants and Their Hosts
by Luyang Hu, Jiansu Wang, Chong Yang, Faisal Islam, Harro J. Bouwmeester, Stéphane Muños and Weijun Zhou
Int. J. Mol. Sci. 2020, 21(23), 9013; https://doi.org/10.3390/ijms21239013 - 27 Nov 2020
Cited by 21 | Viewed by 5743
Abstract
Parasitic plants have a unique heterotrophic lifestyle based on the extraction of water and nutrients from host plants. Some parasitic plant species, particularly those of the family Orobanchaceae, attack crops and cause substantial yield losses. The breeding of resistant crop varieties is an [...] Read more.
Parasitic plants have a unique heterotrophic lifestyle based on the extraction of water and nutrients from host plants. Some parasitic plant species, particularly those of the family Orobanchaceae, attack crops and cause substantial yield losses. The breeding of resistant crop varieties is an inexpensive way to control parasitic weeds, but often does not provide a long-lasting solution because the parasites rapidly evolve to overcome resistance. Understanding mechanisms underlying naturally occurring parasitic plant resistance is of great interest and could help to develop methods to control parasitic plants. In this review, we describe the virulence mechanisms of parasitic plants and resistance mechanisms in their hosts, focusing on obligate root parasites of the genera Orobanche and Striga. We noticed that the resistance (R) genes in the host genome often encode proteins with nucleotide-binding and leucine-rich repeat domains (NLR proteins), hence we proposed a mechanism by which host plants use NLR proteins to activate downstream resistance gene expression. We speculated how parasitic plants and their hosts co-evolved and discussed what drives the evolution of virulence effectors in parasitic plants by considering concepts from similar studies of plant–microbe interaction. Most previous studies have focused on the host rather than the parasite, so we also provided an updated summary of genomic resources for parasitic plants and parasitic genes for further research to test our hypotheses. Finally, we discussed new approaches such as CRISPR/Cas9-mediated genome editing and RNAi silencing that can provide deeper insight into the intriguing life cycle of parasitic plants and could potentially contribute to the development of novel strategies for controlling parasitic weeds, thereby enhancing crop productivity and food security globally. Full article
(This article belongs to the Special Issue Cell Signaling in Model Plants 2.0)
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23 pages, 4158 KiB  
Article
Assessing Habitat Suitability of Parasitic Plant Cistanche deserticola in Northwest China under Future Climate Scenarios
by Jing Liu, Yang Yang, Haiyan Wei, Quanzhong Zhang, Xuhui Zhang, Xiaoyan Zhang and Wei Gu
Forests 2019, 10(9), 823; https://doi.org/10.3390/f10090823 - 19 Sep 2019
Cited by 21 | Viewed by 4486
Abstract
Cistanche deserticola Ma, a perennial parasitic herb of family Orobanchaceae, is mainly parasitic on the roots of the Haloxylon ammodendron Bunge. In view of this special parasitic relationship, we applied random forest (RF) model to forecast potential geographic distribution, and developed a comprehensive [...] Read more.
Cistanche deserticola Ma, a perennial parasitic herb of family Orobanchaceae, is mainly parasitic on the roots of the Haloxylon ammodendron Bunge. In view of this special parasitic relationship, we applied random forest (RF) model to forecast potential geographic distribution, and developed a comprehensive habitat suitability model by integrating bioclimatic and soil factors to assess the suitable distribution of C. deserticola and H. ammodendron across China in 2050s and 2070s under RCP2.6, RCP4.5, and RCP8.5, respectively. We modeled the core potential geographic distribution of C. deserticola by overlaying the distribution of these two species, and analyzed the spatial distribution pattern and migration trend of C. deserticola by using the standard deviational ellipse. In addition, we evaluated the accuracy of RF model through three evaluation indexes, and analyzed the dominant climate factors. The results showed that the core potential distribution areas of C. deserticola are distributed in the Xinjiang Uygur Autonomous Region, the junction of Shaanxi–Gansu–Ningxia provinces, and the Inner Mongolia Autonomous Region. The spatial dispersion would intensify with the increasing of emission scenarios, and the geographical habitat is moving towards higher latitude. Among the three evaluation indexes, the area under the ROC curve (AUC) and True Skill Statistic (TSS) have better assessment results. The main bioclimatic factors affecting the distribution are min temperature of coldest month (Bio6), annual precipitation (Bio12), precipitation of wettest month (Bio13), precipitation of wettest quarter (Bio16), and precipitation of warmest quarter (Bio18), among which the importance of precipitation factors is greater than temperature factors. More importantly, the results of this study could provide some guidance for the improvement of desert forest system, the protection of endangered species and the further improvement of the ecological environment. Full article
(This article belongs to the Special Issue Impact of Land Use Change on Forest Biodiversity)
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62 pages, 8435 KiB  
Review
Pedicularis L. Genus: Systematics, Botany, Phytochemistry, Chemotaxonomy, Ethnopharmacology, and Other
by Claudio Frezza, Alessandro Venditti, Chiara Toniolo, Daniela De Vita, Ilaria Serafini, Alessandro Ciccòla, Marco Franceschin, Antonio Ventrone, Lamberto Tomassini, Sebastiano Foddai, Marcella Guiso, Marcello Nicoletti, Armandodoriano Bianco and Mauro Serafini
Plants 2019, 8(9), 306; https://doi.org/10.3390/plants8090306 - 27 Aug 2019
Cited by 25 | Viewed by 6239
Abstract
In this review, the relevance of the plant species belonging to the Pedicularis L. genus has been considered from different points of view. Particular emphasis was given to phytochemistry and ethnopharmacology, since several classes of natural compounds have been reported within this genus [...] Read more.
In this review, the relevance of the plant species belonging to the Pedicularis L. genus has been considered from different points of view. Particular emphasis was given to phytochemistry and ethnopharmacology, since several classes of natural compounds have been reported within this genus and many of its species are well known to be employed in the traditional medicines of many Asian countries. Some important conclusions on the chemotaxonomic and chemosystematic aspects of the genus have also been provided for the first time. Actually, this work represents the first total comprehensive review on this genus. Full article
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