Search Results (1,383)

Nucleocytoplasmic trafficking is a highly regulated process that allows the cell to control the partitioning of proteins and nucleic acids between the cytosolic and nuclear compartments. The Ebola virus minor matrix protein VP24 (eVP24) hijacks this process by binding to a region on the NPI-1 subfamily of karyopherin alpha (KPNA) nuclear importers. This region overlaps with the activated transcription factor STAT1 binding site on KPNAs, preventing STAT1 nuclear localization and activation of antiviral gene transcription. However, the molecular interactions of eVP24-KPNA5 binding that lead to the nuclear localization of eVP24 remain poorly characterized. Here, we show that trafficking of eVP24 into the nucleus by KPNA5 requires simultaneous binding of cargo. We also describe the conformational dynamics of KPNA5 and interactions with eVP24 and cargo nuclear localization sequences (NLS) using biophysical approaches. Our results reveal that eVP24 binding to KPNA5 does not impact cargo NLS binding to KPNA5, indicating that simultaneous binding of both cellular cargo and eVP24 to KPNA5 is likely required for nuclear trafficking. Together, these results provide a biophysical basis for how Ebola virus VP24 protein gains access to the nucleus during Ebola virus infection. Full article

Objectives: Previous literature has already discussed the effects of age and sex on the diagnosis and treatment of malocclusion problems. However, this effect varies among different ethnic groups. These differences have not yet been investigated in many populations, such as Arab orthodontic patients and residents of Israel. Therefore, it is crucial to understand such variations in specific populations for better diagnosis and treatment. The main aim of this study is to provide novel knowledge concerning skeletal classes I and II among a cohort of Arab patients who are citizens of Israel. We used parameters obtained from lateral cephalograms to understand the variations among different sex and age subgroups. We also examined the correlations and performed principal component analysis (PCA). Methods: This study was based on the coded records of 394 Arab patients diagnosed with skeletal Class I occlusion (SCIO) or skeletal Class II malocclusion (SCIIMO), according to the individualized ANB (Calculated_ANB) of Panagiotidis and Witt. Results: Among patients with SCIO, males had a significantly more horizontal growth pattern (PFH/AFH) and anterior mandible rotation (ML-NSL) than females. Regarding patients with SCIIMO, female adults had more hyperdivergent jaw bases than adolescents (ML-NL) and a more posteriorly rotated mandible (ML-NSL). Spearman’s analysis revealed many significant correlations, like Calculated_ANB, ANB angle, and Wits appraisal. The PCA results showed a remarkable ability to explain 88.6% of the sample variance using four principal components. Conclusions: This research revealed new information regarding Arab orthodontic patients diagnosed with skeletal class I or II. The results demonstrate the differences between the two classes. In addition, this study demonstrated the variation and correlation of cephalometric parameters among different sex and age subgroups in skeletal class I and II Arab patients, especially considering Calculated_ANB. Therefore, this study highlights the need to consider these differences when diagnosing patients and to distinguish the differences across different sex and age subgroups in the diagnosis and treatment process. Furthermore, the PCA results showed the importance of ML-NSL, SN-Pg, PFH/AFH ratio, and NL-ML in explaining the data variance. Full article

The brown planthopper (BPH), Nilaparvata lugens, is the most destructive insect pest of rice. BPH infestations severely threaten rice yield worldwide. The gustatory receptor NlGr23 plays a critical role in mediating the repulsive reaction to oxalic acid of the BPH. We integrated transcriptomic and proteomic analyses to determine the metabolic and behavioral consequences of NlGr23 silencing. The RNAi-mediated knockdown of NlGr23 increased body weight and honeydew production, indicating enhanced feeding activity. The results of multiomics profiling revealed disrupted lipid homeostasis, identifying 187 differentially expressed genes and 150 differentially expressed proteins. These genes were enriched in pathways including glycerophospholipid metabolism, fatty acid biosynthesis, and AMPK signaling. The results of biochemical assays showed that NlGr23 silencing elevated triacylglycerol levels by 68.83%, and reduced glycerol and free fatty acid levels, suggesting impaired lipolysis. The NlGr23 loss-of-function mutation mechanistically activates the AMPK pathway, suppresses lipid breakdown, and promotes energy storage. This study established NlGr23 as a key regulator linking chemosensation to metabolic reprogramming, providing new insights into gustatory receptor-mediated energy homeostasis in the BPH. Full article

The aim of this study was to evaluate the agronomic performance and physicochemical characteristics of broccoli grown under different doses and sources of special phosphorus (P) fertilizers and their residual effect on the soil, in Cerrado mineiro. A randomized block design arranged in a split-plot scheme was employed, where three P sources—T1 = Conventional monoammonium phosphate (CMP); T2 = Polymerized monoammonium phosphate (PCMP); T3 = Granulated organomineral fertilizer (GOF)—along with four P₂O₅ rates—1–0 (No P); 2–50% (200 kg ha⁻¹ P₂O₅); 3–75% (300 kg ha⁻¹ P₂O₅); and 4–100% (400 kg ha⁻¹ P₂O₅)—were assessed. Evaluations included the number of leaves (NL), head fresh (HFM) and dry mass (HDM), yield (YLD), soil fertility at harvest, plant nutritional status, and the physicochemical quality of the harvested broccoli. It was observed that GOF provided the best agronomic performance (HFM, HDM and YLD) of the broccoli and the greatest residual effect in the soil compared to PCMP and CMP. The moisture, ash, protein, lipid, total titratable acid and ascorbic acid contents were not significantly (p < 0.05) affected by the fertilizers used, on the other hand, total soluble solids and hydrogen potential showed the highest and lowest values, respectively, with CMP. The best agronomic performance, the highest phosphorus content in the soil and plant and the best physical–chemical quality of the broccoli occurred at a dose of 100% (400 kg ha⁻¹ of P₂O₅) of the recommendation for the crop in all three fertilizers evaluated. Full article

S355NL structural steel is extensively employed in bridges, ships, and power station equipment owing to its excellent tensile strength, weldability, and low-temperature toughness. However, pronounced fluctuations in its Charpy impact energy at low temperatures significantly compromise the reliability and service life of critical components. In this study, vacuum-induction-melted ingots of S355NL steel containing 0–0.086 wt.% rare earth cerium were prepared. The effects of Ce on microstructures, inclusions, and impact toughness were systematically investigated using optical microscopy (OM), scanning electron microscopy (SEM), electron backscatter diffraction (EBSD), and Charpy V-notch testing. The results indicate that appropriate Ce additions (0.0011–0.0049 wt.%) refine the average grain size from 5.27 μm to 4.88 μm, reduce the pearlite interlamellar spacing from 204 nm to 169 nm, and promote the transformation of large-size Al₂O₃-MnS composite inclusions into fine, spherical, Ce-rich oxysulfides. Charpy V-notch tests at –50 °C reveal that 0.0011 wt.% Ce enhances both longitudinal (269.7 J) and transverse (257.4 J) absorbed energies while minimizing anisotropy (E_t/E_l  =  1.01). Conversely, excessive Ce addition (0.086 wt.%) leads to coarse inclusions and deteriorates impact performance. These findings establish an optimal Ce window (0.0011–0.0049 wt.%) for microstructural and inclusion engineering to enhance the low-temperature impact toughness of S355NL steel. Full article

Monoterpene indole alkaloids (MIAs) exhibit diverse structures and pharmacological effects. Annotating MIAs in herbal medicines remains challenging when using liquid chromatography combined with high-resolution mass spectrometry (LC-HRMS). This study introduced a new annotation strategy employing LC-HRMS to efficiently identify MIAs in herbal medicines. Briefly, MS² spectra under multiple collision energies (MCEs/MS²) helped capture high-quality product ions across a range of mass-to-charge (m/z) values, revealing key MS² features such as diagnostic product ions (DPIs), characteristic cleavages (CCs), and neutral/radical losses (NLs/RLs). Next, feature-based molecular networking (FBMN) was created to map the structural relationships among MIAs across large MS datasets. Potential MIAs were then graded and annotated through systematic comparison with known biosynthetic pathways (BPs), derived skeletons, and their characteristic substituents. The MCEs/MS²-FBMN/BPs workflow was first applied to annotate MIAs in the alkaloids from the leaf of Alstonia scholaris (ALAS), a new botanical drug for respiratory diseases. A total of 229 MIAs were systematically annotated and classified, forming a solid basis for future clinical research on ALAS. This study offers an effective strategy that enhances the structural annotation of MIAs within complex herbal medicines. Full article

Recognizing the interrelationship among variables becomes critical in genetic breeding programs, where the goal is often to optimize selection for multiple traits. Conventional multi-trait models face challenges such as convergence issues, and they fail to account for cause-and-effect relationships. To address these challenges, we conducted a comprehensive analysis involving confirmatory factor analysis (CFA), Bayesian networks (BN), structural equation modeling (SEM), and genome-wide selection (GWS) using data from 195 arabica coffee plants. These plants were genotyped with 21,211 single nucleotide polymorphism markers as part of the Coffea arabica breeding program at UFV/EPAMIG/EMBRAPA. Traits included vegetative vigor (VV), canopy diameter (CD), number of vegetative nodes (NVN), number of reproductive nodes (NRN), leaf length (LL), and yield (Y). CFA established the following latent variables: vigor latent (VL) explaining VV and CD; nodes latent (NL) explaining NVN and NRN; leaf length latent (LLL) explaining LL; and yield latent (YL) explaining Y. These were integrated into the BN model, revealing the following key interrelationships: LLL → VL, LLL → NL, LLL → YL, VL → NL, and NL → YL. SEM estimated structural coefficients, highlighting the biological importance of VL → NL and NL → YL connections. Genomic predictions based on observed and latent variables showed that using VL to predict NVN and NRN traits resulted in similar gains to using NL. Predicting gains in Y using NL increased selection gains by 66.35% compared to YL. The SEM-GWS approach provided insights into selection strategies for traits linked with vegetative vigor, nodes, leaf length, and coffee yield, offering valuable guidance for advancing Arabica coffee breeding programs. Full article

P. aeruginosa strain NL201 was cultured from an urban water drain in a populated subway underpass as an environmental isolate for the ST111 global high-risk P. aeruginosa clone. In addition to carrying generally present intrinsic P. aeruginosa antibiotic resistance genes, this serotype O4 isolate also carries a set of additional acquired resistance determinants, including aadA2, bla_OXA-10, sul1, and an aac(6′)-Ib family gene. The NL201 isolate features the bla_PDC-3 allele, which was found to confer significantly higher catalytic efficiency against cefepime and imipenem compared to bla_PDC-1, as well as the potent P. aeruginosa virulence factors exoS, exoT, and algD. Serotype O4 isolates of the ST111 global high-risk P. aeruginosa clone have been reported from clinical samples in Canada and the USA, human stool samples in France, and environmental samples (such as cosmetic, hospital drains, and urban water drain) from various European countries. These observations underscore the effective dissemination of the ST111 global high-risk P. aeruginosa clone between different hosts, environments, and habitats, and they warrant targeted investigations from a One Health perspective on the possible routes of its spread and molecular evolution. Full article

The BCR-ABL1 chimeric oncoprotein plays a pivotal role in the pathogenesis of Chronic Myeloid Leukemia (CML) as its constitutive kinase activity transforms the hematopoietic stem cell, promoting pro-survival signaling. We and others have previously shown that the manipulation of BCR-ABL1 catalytic activity modulates its intracellular localization, thereby transforming the culprit of CML into a pro-apoptotic protein that selectively kills leukemic cells. Here, we investigated the role of the BCR coiled-coil and C2 domains on BCR-ABL1 intracellular localization and leukemogenic potential. We performed a bioinformatic analysis that identified two putative nuclear localization signals (NLSs) in BCR. Using recombinant DNA strategies, we generated multiple BCR and BCR-ABL1 mutants that were ectopically expressed in human cells. The intracellular localization of each construct was analyzed by immunofluorescence, while their biological activity was investigated employing proliferation and transforming assays. We show that BCR displays two nuclear localization signals functionally inactivated by the coiled-coil and C2 domains. The removal of these regions reactivated the nuclear migration of both BCR and BCR-ABL1 mutants. Moreover, BCR-ABL1 constructs devoid of the coiled-coil and C2 domains displayed reduced transforming potential in Ba/F3 cells and in primary human CD34+ progenitors. Finally, we demonstrate that the deletion of the C2 domain compromises TKI efficacy. Our findings identify two nuclear localization signals in the BCR sequence that are functionally suppressed by the coiled-coil and C2 domains. Targeting these regions may provide additional therapeutic strategies to manipulate both BCR-ABL1 intracellular localization and kinase activity. Full article

Anthocyanins (ACNs), characterized by their polyhydroxy structures, exhibit high susceptibility to external environmental factors, which significantly limits their application in the food and industrial sectors. To enhance the stability of anthocyanins, anthocyanin nanoliposomes (ACN-NLs) were developed, with encapsulation efficiency, particle size and zeta potential serving as key evaluation parameters. Furthermore, through layer-by-layer self-assembly and electrostatic interactions, ACN-NLs were modified using synanthrin (SY) and pea protein isolate (PPI). Consequently, PPI-modified ACN-NLs (PPI-ACN-NLs) and SY-PPI-modified ACN-NLs (SY-PPI-ACN-NLs) were successfully synthesized. In this study, the structural characteristics of liposomes were investigated using X-ray diffraction (XRD), their in vitro digestibility was evaluated, and their stability under different temperatures, light conditions, and simulated food system conditions was assessed. The results demonstrated that when the mass ratio of soybean lecithin to cholesterol, soybean lecithin to anhydrous ethanol, and drug-to-lipid ratio were set at 5:1, 3:100, and 3:10, respectively, with an ACN concentration of 4 mg/mL, a pea protein solution with pH 3.0, a PPI concentration of 10 mg/mL, and an SY concentration of 8 mg/mL, the prepared ACN-NLs, PPI-ACN-NLs, and SY-PPI-ACN-NLs exhibited optimal performance. Their respective encapsulation efficiencies were 52.59 ± 0.24%, 83.80 ± 0.43%, and 90.38 ± 0.24%; average particle sizes were 134.60 ± 0.76 nm, 213.20 ± 0.41 nm, and 246.60 ± 0.24 nm zeta potentials were −32.4 ± 0.75 mV, −27.46 ± 0.69 mV, and −16.93 ± 0.31 mV. The changes in peak shape observed via X-ray diffraction (XRD), in vitro digestion profiles, and alterations in anthocyanin release rates under different conditions collectively indicated that the modification of ACN-NLs using SY and PPI enhanced the protective effect on the ACNs, improving their biological activity, and providing a robust foundation for the practical application of ACNs. Full article

Hyperspectral technology can non-destructively identify and analyze minerals. However, the quantitative inversion of different components in mixed minerals remains difficult in mineral spectral analysis. A set of mineral samples was prepared from dolomite and gypsum, varying in their components. Three improved spectral decomposition models were proposed: the Continuum Removal-Fully Constrained Linear Spectral Model (CR-FCLSM), the Natural Logarithm-Fully Constrained Linear Spectral Model (NL-FCLSM), and the Ratio Derivative Model (RDM). The unmixing Abundance Error (AE) was 0.161, 0.051, and 0.082 for CR-FCLSM, NL-FCLSM, and RDM. The results of the three improved linearized unmixing models are better than those of the traditional linear spectral unmixing model. The NL-FCLSM effectively enhanced the linear characteristics of the spectrum, making it more suitable for two mineral mixing scenarios. The systematic bias of CR-FCLSM may be due to its insufficient sensitivity to low-abundance signals. The stability of RDM depends on the selection of a strong linear band. The unmixing experiments of the measured spectra and the data from the USGS spectral library demonstrate that the improved linear unmixing model is more accurate than the traditional linear spectral model and simpler to calculate than the nonlinear spectral model, providing a new approach for demodulating hyperspectral images. Full article

Background: N6-methyladenosine (m6A) is the most prevalent chemical modification of eukaryotic RNA, playing a crucial role in regulating plant growth and development, stress responses, and other essential biological processes. The enzymes involved in m6A modification—methyltransferases (writers), demethylases (erasers), and recognition proteins (readers)—have been identified in various plant species; however, their roles in the economically significant tree species Populus deltoides × P. euramericana (NL895) remain underexplored. Results: In this study, we identified 39 m6A-related genes in the NL895 genome, comprising 8 writers, 13 erasers, and 18 readers. Evolutionary analysis indicated that the expansion of writers and readers primarily resulted from whole-genome duplication events. Purifying selection pressures were observed on all duplicated gene pairs, suggesting their essential roles in functional differentiation. Phylogenetic analysis revealed that writers, erasers, and readers are categorized into six, four, and two groups, respectively, with these genes being more conserved among dicotyledonous plants. Gene structure, protein domains, and motifs exhibited greater conservation within the same group. Promoter analysis of m6A-related genes showed enrichment of cis-acting elements associated with responses to light, phytohormones, and stress, indicating their potential involvement in gene expression regulation. Under cadmium treatment, the expression of all writers was significantly upregulated in both the aboveground and root tissues of NL895. Conclusions: This study systematically identified m6A-related gene families in Populus deltoides × P. euramericana (NL895), elucidating their evolutionary patterns and expression regulation characteristics. These findings provide a theoretical foundation for analyzing the molecular mechanisms of m6A modification in poplar growth, development, and stress adaptation, and offered candidate genes for molecular breeding in forest trees. Full article

The Fit for 55 and Euro 7 regulations significantly reduce CO₂ emissions from combustion sources. This will be reflected in the regulations governing the approval of in-service vehicles, including those using alternative fuels. The present study focused on the rapid diagnostics of the technical condition of gas injectors. The test method was a modification of the Gaussian characteristic fields method using the Szpica–Warakomski rectilinear trend. The flow tests resulted in average volumetric intensities of 111 NL/min and 124 NL/min, depending on the operating conditions. The opening and closing times were in the range of (1.3…3.5) ms. The directional parameter of the rectilinear trend, which is important from the point of view of the analyses, was 0.97 for brand new (BN) injectors and 1.00 for in-service (IO) injectors. The intersection parameters were 0.64 and 0.24, respectively. The qualitative evaluation yielded coefficients of determination of 95.01 and 94.07. The values of the trend parameters were strongly dependent on the design solution and model/type of injector. Inferring the effect of operating condition on the trend parameter values, a one-factor analysis of variance was performed, which showed the significance of only the directional coefficient. A comparison of the same BN and IO injector model showed an apparent change in the value of the intercept only. No significant relationships between the injector opening and closing times and the trend parameters were shown. Thus, the usefulness of using the Szpica–Warakomski rectilinear trend in the functional evaluation of gas injectors of different designs and under different operating conditions was demonstrated. Full article

Momordica balsamina, a plant traditionally used in African medicine, contains a 30 kDa protein, MoMo30, previously identified by our group as an anti-HIV agent that binds glycan residues on the gp120 envelope protein, thereby acting as an entry inhibitor. In this study, we investigated whether prolonged exposure to MoMo30 exerts selective pressure on HIV-1 and induces mutations in the viral envelope (env) gene. T-lymphocyte cells were infected with HIV-1_NL4-3 and continuously treated with MoMo30 over a 24-day period. Viral RNA was isolated at regular intervals, and env genes were sequenced using the Illumina platform. RNA sequence variant calling was performed using iVar, which uses a frequency-based binomial test with a default allele frequency threshold of 3% and a minimum base quality of 20 and applies Bonferroni correction for multiple testing. The infectivity of the MoMo30-exposed virus was assessed using MAGI-CXCR4 cells, visualized by β-galactosidase staining, and compared to untreated controls. Statistical significance was determined via two-way ANOVA. MoMo30-treated HIV-1 exhibited multiple detrimental mutations in gp120 and gp41, including missense, nonsense, and frameshift changes. Notably, 32% of N-linked glycosylation sites were deleted in the treated virus, while no such changes were observed in controls. Functionally, the MoMo30-treated virus demonstrated a sixfold reduction in infectivity compared to untreated HIV-1_NL4-3. These findings suggest that MoMo30 imposes genetic pressure on HIV-1_NL4-3, selecting for mutations that reduce viral fitness. Full article

Methylene blue is a type of azo pollutant that is used in the textile industry and endangers natural resources and human health by mixing wastewater into nature and drinking water. The aim of this study was to create active sites on the surface of PAN nanofibers for methylene blue (MB) adsorption. For this purpose, nanofibers obtained from polyacrylonitrile by the electrospinning method were modified with NiO nanoparticles (Ni) and treated with triethanolamine (TEA). The nanofiber obtained via treatment with tea was labeled as Am. The obtained nanofibers (Am/PAN/Ni-nl, PAN/Ni-nl, Am/PA-nl, and PAN-nl) were characterized comparatively by BET, FT-IR and SEM, and the adsorption performance was evaluated by time-dependent q_e, isotherm, kinetic and thermodynamic graphs. The shortest equilibrium time of 20 min and the highest equilibrium amount of 45.96 mg g⁻¹ were reached with 0.1 g of Am/PAN/Ni-nl. The Langmuir isotherm and pseudo-second-order kinetics were found to be appropriate, with an R² value of 0.9987. The enthalpy change was calculated as −92.947 kJ mol⁻¹. Using RSM, the adsorption for Am/PAN/Ni-nl obeyed the quadratic model and the adsorbent exhibited a maximum adsorption capacity of 52.3575 mg g⁻¹ for methylene blue at pH 6, 25 °C and 140 ppm. Full article