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Keywords = Misgurnus anguillicaudatus

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12 pages, 1010 KiB  
Article
The Effect of cdk1 Gene Knockout on Heat Shock-Induced Polyploidization in Loach (Misgurnus anguillicaudatus)
by Hanjun Jiang, Qi Lei, Wenhao Ma, Junru Wang, Jing Gong, Xusheng Guo and Xiaojuan Cao
Life 2025, 15(8), 1223; https://doi.org/10.3390/life15081223 - 2 Aug 2025
Viewed by 275
Abstract
(1) Background: Polyploid fish are highly important in increasing fish production, improving fish quality, and breeding new varieties. The loach (Misgurnus anguillicaudatus), as a naturally polyploid fish, serves as an ideal biological model for investigating the mechanisms of chromosome doubling; (2) [...] Read more.
(1) Background: Polyploid fish are highly important in increasing fish production, improving fish quality, and breeding new varieties. The loach (Misgurnus anguillicaudatus), as a naturally polyploid fish, serves as an ideal biological model for investigating the mechanisms of chromosome doubling; (2) Methods: In this study, tetraploidization in diploid loach was induced by heat shock treatment, and, for the first time, the role of the key cell cycle gene cdk1 (cyclin-dependent kinase 1) in chromosome doubling was investigated; (3) Results: The experimental results show that when eggs are fertilized for 20 min and then subjected to a 4 min heat shock treatment at 39–40 °C, this represents the optimal induction condition, resulting in a tetraploid rate of 44%. Meanwhile, the results of the cdk1 knockout model (2n cdk1−/−) constructed using CRISPR/Cas9 showed that the absence of cdk1 significantly increased the chromosome doubling efficiency of the loach. The qPCR analysis revealed that knockout of cdk1 significantly upregulated cyclin genes (ccnb3,ccnc, and ccne1), while inhibiting expression of the separase gene espl1 (p < 0.05); (4) Conclusions: During chromosome doubling in diploid loaches induced by heat shock, knocking out the cdk1 gene can increase the tetraploid induction rate. This effect may occur through downregulation of the espl1 gene. This study offers novel insights into optimizing the induced breeding technology of polyploid fish and deciphering its molecular mechanism, while highlighting the potential application of integrating gene editing with physical induction. Full article
(This article belongs to the Section Animal Science)
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18 pages, 2761 KiB  
Article
Transcriptomic Profiling of Misgurnus anguillicaudatus Reveals the Anti-Inflammatory Action of Lonicera japonica Extract in Response to Lipopolysaccharide Challenge
by Yue Zhao, Chen Wang and Qiuning Liu
Fishes 2025, 10(7), 333; https://doi.org/10.3390/fishes10070333 - 7 Jul 2025
Viewed by 317
Abstract
Honeysuckle, derived from the dried flower buds or blossoms of Lonicera japonica Thunb, is a traditional Chinese medicine known for its properties in eliminating heat and toxins, reducing inflammation, and alleviating swelling. In this study, we investigated the potential therapeutic and preventive benefits [...] Read more.
Honeysuckle, derived from the dried flower buds or blossoms of Lonicera japonica Thunb, is a traditional Chinese medicine known for its properties in eliminating heat and toxins, reducing inflammation, and alleviating swelling. In this study, we investigated the potential therapeutic and preventive benefits of L. japonica extract on inflammatory diseases induced by lipopolysaccharide (LPS) using Misgurnus anguillicaudatus as a model organism. The fish were fed a diet supplemented with L. japonica extract, followed by LPS injection to induce inflammation. We then analyzed the transcriptional profile to identify differentially expressed genes (DEGs). A total of 6611 DEGs were identified through comprehensive analysis, including Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses. Our results revealed significant enrichment of DEGs in pathways associated with proteasome function, immune system regulation, and infectious disease response. These findings suggest a strong correlation between L. japonica and immune defense mechanisms, providing valuable insights into the potential anti-inflammatory effects of this plant, particularly in the context of LPS-induced inflammation. This study highlights the potential use of L. japonica in treating inflammatory diseases and underscores its role in immune regulation. Full article
(This article belongs to the Special Issue Molecular Mechanism of Fish Immune Response to Pathogens)
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14 pages, 2014 KiB  
Article
Occurrence, Bioaccumulation, and Risk Assessment of Organophosphate Esters in Rivers Receiving Different Effluents
by Shuyan Da and Jun Wang
Toxics 2024, 12(8), 612; https://doi.org/10.3390/toxics12080612 - 20 Aug 2024
Cited by 4 | Viewed by 1621
Abstract
Organophosphate esters (OPEs), as alternatives to brominated flame retardants, are extensively used in both production and daily life, with their environmental contamination and toxic effects being a concern. This study investigated the concentration levels, bioaccumulation, and ecological effects of OPEs in five different [...] Read more.
Organophosphate esters (OPEs), as alternatives to brominated flame retardants, are extensively used in both production and daily life, with their environmental contamination and toxic effects being a concern. This study investigated the concentration levels, bioaccumulation, and ecological effects of OPEs in five different effluent-receiving rivers. The results demonstrate that the concentration range of Σ13OPEs across the five rivers was between 142.23 and 304.56 ng/L (mean: 193.50 ng/L). The highest pollution levels of OPEs were found in rivers receiving airport and industrial wastewater, followed by agricultural wastewater, mixed wastewater, and domestic wastewater. Tris(2-chloroisopropyl) phosphate (TCPP), triethyl phosphate (TEP), and tricresyl phosphate (TCrP) were identified as the main pollutants. The accumulation concentrations of OPEs in fish ranged from 54.0 to 1080.88 ng/g dw, with the highest bioaccumulation found in Pelteobagrus fulvidraco, followed by Carassius auratus and Misgurnus anguillicaudatus. The brain was the primary organ of accumulation, followed by the liver, gills, intestine, and muscle. Tri-n-propyl phosphate (TPeP) and TEP exhibited the highest bioconcentration, with log BAF values exceeding three. The bioaccumulation of OPEs was influenced by pollutant concentration levels, hydrophobic properties, and biological metabolism. Ecological risk assessment revealed that the cumulative risk values of Σ13OPEs ranged from 0.025 to 16.76, with TCrP being the major contributor. It posed a medium–low risk to algae but a high risk to crustaceans and fish. Full article
(This article belongs to the Special Issue Environmental Risk Assessment and Control of Emerging Contaminants)
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13 pages, 2245 KiB  
Article
The Structure of Digestive Tract Coordinating Digestion and Respiration in an Air-Breathing Weatherloach, Misgurnus anguillicaudatus
by Zixin Qi, Hongbo Ma, Li Ma and Xuefen Yang
Biology 2024, 13(6), 381; https://doi.org/10.3390/biology13060381 - 25 May 2024
Viewed by 1320
Abstract
To clarify how the digestive tract of the weatherloach, Misgurnus anguillicaudatus, serves a dual function of digestion and respiration simultaneously, the histological structures of its digestive tract, the passage of digesta and air passing through its intestine and the rate of intestinal [...] Read more.
To clarify how the digestive tract of the weatherloach, Misgurnus anguillicaudatus, serves a dual function of digestion and respiration simultaneously, the histological structures of its digestive tract, the passage of digesta and air passing through its intestine and the rate of intestinal evacuation have been studied. The results indicate that the digestive tract is divided into five functional regions, i.e., esophagus, anterior intestine, middle intestine, posterior intestine and rectum. The diverse intestinal structures have the specialized function of coordinating digestion and respiration. An X-ray barium meal examination showed in the normal breathing state, the contents of the intestine are diffusely semifluid, and air is distributed as bubbles in the dorsal intestine 2 h after feeding. After 5 h, the contents accumulated in the mid and posterior intestine, and gas flowed above the contents as bundles. After 8 h, the intestinal food was basically evacuated. In the intestinal air-breathing restricted group, the contents of the intestine remained diffuse, and a large number of digesta entered and remained in the rectum after 5 h. After the inhibition was relieved, the contents of the rectum were rapidly discharged. Measurement of the intestinal evacuation rate in the intestine showed that the evacuation of the intestinal contents lagged behind that of the normal group in the air-breathing restricted group. Compared to the normal state and inhibited GAB (gastrointestinal air breathing), we could deduce that GAB could promote the movement of the intestine. Full article
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12 pages, 2039 KiB  
Article
Enhancing Indoor Culture of Weather Loach (Misgurnus anguillicaudatus) and Caipira Lettuce (Lactuca sativa) in a Decoupled FLOCponics System
by Junseong Park, Ju-ae Hwang, Jongryeol Choe, Donggil Lee and Hyeongsu Kim
Fishes 2024, 9(5), 150; https://doi.org/10.3390/fishes9050150 - 23 Apr 2024
Cited by 2 | Viewed by 2126
Abstract
Interest in aquaponics (AP) is increasing due to its ability to minimize sewage and maximize feed efficiency in fish farming. However, owing to limitations of intensive cultures and a lack of nutrients such as NO3 for growing crops, AP requires the use [...] Read more.
Interest in aquaponics (AP) is increasing due to its ability to minimize sewage and maximize feed efficiency in fish farming. However, owing to limitations of intensive cultures and a lack of nutrients such as NO3 for growing crops, AP requires the use of artificial nutrients. Therefore, novel approaches are required to develop AP-intensive culturing methods. An AP system based on biofloc technology (BFT) called FLOCponics (FP) has been recommended. Here, the productivity of the weather loach (Misgurnus anguillicaudatus) in the FP system, BFT system, and flow-through systems (FTSs), as well as these systems’ effect on Caipira lettuce (Lactuca sativa) growth, was analyzed. To compare crop productivity, a hydroponic (HP) bed was installed. The growth rate of M. anguillicaudatus showed significant differences, at 51.1 ± 3.69% in the FP system, followed by 24.0 ± 4.16% in the BFT system and −14.3 ± 1.4% in the FTS. Its survival rates were better in the FP system (91.1 ± 2.64%) than in the BFT system (82.1 ± 10.98%) or the FTS (66.8 ± 2.75%) (p < 0.05). Total ammonia nitrogen and NO2-N concentrations were stabilized in every plot during the experimental period. However, the NO3-N concentration continuously increased in the BFT system but decreased in the FP system and was maintained. The shoot weight of the Caipira lettuce was 163.6 ± 8.65 g in the FP system and 149.6 ± 9.05 g in the HP system. In conclusion, FP system can provide a large amount of nutrients and improve the growth performance of both fish and crops in the FP system. Full article
(This article belongs to the Special Issue Advances in Sustainable Aquaculture Production Systems)
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19 pages, 2711 KiB  
Article
Toxic Effects of Arsenic on Four Freshwater Aquatic Species and Its Transformation Metabolism in Crucian Carp (Carassius auratus)
by Shizhan Tang, Lei Gao, Dongli Qin, Haitao Wang, Li Huang, Song Wu, Shuyan Bai, Ningning Du, Yanchun Sun, Peng Wang and Zhongxiang Chen
Toxics 2024, 12(3), 221; https://doi.org/10.3390/toxics12030221 - 17 Mar 2024
Cited by 2 | Viewed by 2048
Abstract
Inorganic arsenic is a well-known carcinogen that is much more toxic than its organic counterpart. While much is known about the accumulation and transformation of arsenic in marine organisms, little is known regarding these processes in freshwater aquatic species. In this study, the [...] Read more.
Inorganic arsenic is a well-known carcinogen that is much more toxic than its organic counterpart. While much is known about the accumulation and transformation of arsenic in marine organisms, little is known regarding these processes in freshwater aquatic species. In this study, the acute toxicity and toxicological effects of inorganic arsenic on four freshwater organisms (Cyprinus carpio, Misgurnus anguillicaudatus, Pseudorasbora parva, Eriocheir sinensis) commonly found in rice-fish farming systems were investigated. The organisms exhibited different levels of sensitivity to inorganic arsenic, with crustaceans being more sensitive than fish. Fish were found to be more tolerant to As(V) than As(III). The study also investigated the accumulation, transformation, and release of inorganic arsenic in crucian carp, an omnivorous species with high environmental tolerance. The fish accumulated As(III) rapidly in various tissues, and were able to transport it to other tissues through gills, intestines, and skin. The accumulated As(III) was converted into less toxic forms, such as monomethylarsonic acid (MMA) and dimethylarsinic acid (DMA), via methylation. The fish also converted As(III) into arsenate (AsV) via enzymatic and oxidative reactions. After the transferal to clean water, the forms of arsenic in the various tissues decreased rapidly, but the rates of excretion of the four forms of arsenic were not the same among the different tissues. Our results suggest that crucian carp can reduce the environmental toxicity of As(III) at certain concentrations by transforming it into less toxic forms within their bodies. Full article
(This article belongs to the Section Ecotoxicology)
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29 pages, 1203 KiB  
Review
Proposing Effective Ecotoxicity Test Species for Chemical Safety Assessment in East Asia: A Review
by Jin Wuk Lee, Ilseob Shim and Kyunghwa Park
Toxics 2024, 12(1), 30; https://doi.org/10.3390/toxics12010030 - 30 Dec 2023
Cited by 2 | Viewed by 2850
Abstract
East Asia leads the global chemical industry, but environmental chemical risk in these countries is an emerging concern. Despite this, only a few native species that are representative of East Asian environments are listed as test species in international guidelines compared with those [...] Read more.
East Asia leads the global chemical industry, but environmental chemical risk in these countries is an emerging concern. Despite this, only a few native species that are representative of East Asian environments are listed as test species in international guidelines compared with those native to Europe and America. This review suggests that Zacco platypus, Misgurnus anguillicaudatus, Hydrilla verticillata, Neocaridina denticulata spp., and Scenedesmus obliquus, all resident to East Asia, are promising test species for ecotoxicity tests. The utility of these five species in environmental risk assessment (ERA) varies depending on their individual traits and the state of ecotoxicity research, indicating a need for different applications of each species according to ERA objectives. Furthermore, the traits of these five species can complement each other when assessing chemical effects under diverse exposure scenarios, suggesting they can form a versatile battery for ERA. This review also analyzes recent trends in ecotoxicity studies and proposes emerging research issues, such as the application of alternative test methods, comparative studies using model species, the identification of specific markers for test species, and performance of toxicity tests under environmentally relevant conditions. The information provided on the utility of the five species and alternative issues in toxicity tests could assist in selecting test species suited to study objectives for more effective ERA. Full article
(This article belongs to the Special Issue Environmental Risk Assessment and Control of Emerging Contaminants)
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17 pages, 7960 KiB  
Article
Structure Characterization and Immunomodulatory Activity of Misgurnus anguillicaudatus Carbohydrates
by Liyuan Yun, Conglin Han, Xiaoqing He, Qian Li, Viktor Fersht and Min Zhang
Molecules 2023, 28(15), 5771; https://doi.org/10.3390/molecules28155771 - 31 Jul 2023
Cited by 2 | Viewed by 1644
Abstract
Misgurnus anguillicaudatus, also known as oriental weather loach, is widely consumed and favored in East Asia due to its superior nutritional values and excellent flavor. In this study, a crude Misgurnus anguillicaudatus carbohydrates (MAC) was isolated from Misgurnus anguillicaudatus. Subsequently, two parts, [...] Read more.
Misgurnus anguillicaudatus, also known as oriental weather loach, is widely consumed and favored in East Asia due to its superior nutritional values and excellent flavor. In this study, a crude Misgurnus anguillicaudatus carbohydrates (MAC) was isolated from Misgurnus anguillicaudatus. Subsequently, two parts, which were named MAO and MAP, respectively, were separated from MAC, and their primary structures and immunomodulatory activity were investigated. The results showed that MAO had a molecular weight of 2854 Da, and principally consisted of arabinose (77.11%) and rhamnose (21.97%), together with minor levels of fucose (0.92%); MAP, with a molecular weight of 3873 Da, was mainly composed of fucose (87.55%) and a small amount of rhamnose (8.86%) and galactose (3.59%). The in vitro assay showed that MAC could significantly enhance the proliferation of macrophages without cytotoxicity and increase the production of immune substances (TNF-α, IL-6). Together with Western blot results, we speculated that MAC could stimulate RAW264.7 murine macrophage cells to secrete TNF-α and IL-6 through up-regulating TLR4-MAPK-p38 signaling pathways. The results indicated that MAC could be a potential immune agent and might provide meaningful information for further chain conformation and immune mechanism research. Full article
(This article belongs to the Section Medicinal Chemistry)
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19 pages, 5274 KiB  
Article
Multiple Bioactivities of Peptides from Hydrolyzed Misgurnus anguillicaudatus
by Baojie Dou, Xudong Wu, Zihan Xia, Guanghao Wu, Quanyou Guo, Mingsheng Lyu and Shujun Wang
Molecules 2023, 28(6), 2589; https://doi.org/10.3390/molecules28062589 - 13 Mar 2023
Cited by 9 | Viewed by 2347
Abstract
Misgurnus anguillicaudatus (loach) is a widely distributed benthic fish in Asia. In this study, the alkaline protease was used to hydrolyze loach, and the hydrolysate products of different molecular weights were obtained by membrane separation. In vitro antioxidant assays showed that the <3 [...] Read more.
Misgurnus anguillicaudatus (loach) is a widely distributed benthic fish in Asia. In this study, the alkaline protease was used to hydrolyze loach, and the hydrolysate products of different molecular weights were obtained by membrane separation. In vitro antioxidant assays showed that the <3 kDa fraction (SLH-1) exhibited the strongest antioxidant activity (DPPH, hydroxyl radical and superoxide radical scavenging ability, and reducing power), while SLH-1 was purified by gel filtration chromatography, and peptide sequences were identified by LC-MS/MS. A total of six peptides with antioxidant activity were identified, namely SERDPSNIKWGDAGAQ (D-1), TVDGPSGKLWR (D-2), NDHFVKL (D-3), AFRVPTP (D-4), DAGAGIAL (D-5), and VSVVDLTVR (D-6). In vitro angiotensin-converting enzyme (ACE) inhibition assay and pancreatic cholesterol esterase (CE) inhibition assay, peptide D-4 (IC50 95.07 μg/mL, 0.12 mM) and D-2 inhibited ACE, and peptide D-2 (IC50 3.19 mg/mL, 2.62 mM), D-3, and D-6 acted as pancreatic CE inhibitors. The inhibitory mechanisms of these peptides were investigated by molecular docking. The results showed that the peptides acted by binding to the key amino acids of the catalytic domain of enzymes. These results could provide the basis for the nutritional value and promote the type of healthy products from hydrolyzed loach. Full article
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15 pages, 4395 KiB  
Article
De Novo Transcriptome Analysis of the Early Hybrid Triploid Loach (Misgurnus anguillicaudatus) Provides Novel Insights into Fertility Mechanism
by Ziyu Zhou, Gu Shan, Xin Li, Wenxuan Guo, Kexin Ma, Yueyao Yang, Yifan Li, Yunbang Zhang, He Zhou and Xiaojuan Cao
Fishes 2023, 8(2), 70; https://doi.org/10.3390/fishes8020070 - 23 Jan 2023
Cited by 2 | Viewed by 2335
Abstract
As a new freshwater aquaculture product, triploid loaches (Misgurnus anguillicaudatus) are characterized by fast growth, high-quality meat, high edibility, high resistance to disease, and sterility. In this study, a natural tetraploid loach (4n = 100) (♀) was crossed with a diploid [...] Read more.
As a new freshwater aquaculture product, triploid loaches (Misgurnus anguillicaudatus) are characterized by fast growth, high-quality meat, high edibility, high resistance to disease, and sterility. In this study, a natural tetraploid loach (4n = 100) (♀) was crossed with a diploid loach (2n = 50) (♂), thus creating the hybrid triploid loach (3n = 75). The histological observations of triploid offspring and diploid controls at 4 days post-hatching (dph), 15dph, 22dph, and 50dph showed that most of the hybrid triploid loaches were abortive in the early gonad differentiation process. To explore its fertility mechanism, through transcriptome analyses of triploid offspring and diploid controls at four periods, 10 differentially expressed genes related to the early fertility mechanism were identified: amh, hormad1, rec8, h2b, plvap, zp3, h2a, nrb0b1, ddx4, and esr2. According to the Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses of DEGs, two pathways were identified that are closely related to the early fertility mechanism at 50dph: the estrogen signaling pathway and steroid biosynthesis. The findings laid a foundation for further exploration of their molecular inhibition mechanism in hybrid triploid loaches. Full article
(This article belongs to the Special Issue Application of Transcriptomics in Fish)
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16 pages, 2438 KiB  
Article
Evidence for the Growth Superiority and Delayed Ovarian Development in Tetraploid Loach Misgurnus anguillicaudatus
by Xiaoyun Zhou, Zexia Gao, Shuangshuang Luo, Junxiao Su and Shaokui Yi
Fishes 2022, 7(6), 322; https://doi.org/10.3390/fishes7060322 - 8 Nov 2022
Cited by 3 | Viewed by 2528
Abstract
The diploids and tetraploids of cyprinid loach Misgurnus anguillicaudatus coexist in many natural habits. The tetraploids generally exhibit superior growth performance and delayed gonadal development compared with diploids. To investigate the regulation mechanism of growth superiority and ovarian development in tetraploids, we first [...] Read more.
The diploids and tetraploids of cyprinid loach Misgurnus anguillicaudatus coexist in many natural habits. The tetraploids generally exhibit superior growth performance and delayed gonadal development compared with diploids. To investigate the regulation mechanism of growth superiority and ovarian development in tetraploids, we first conducted a long-term culture experiment and histological observation. The tetraploids exhibited a higher growth performance and delayed ovarian development. Meanwhile, at a genetic level, an average of 6891 differentially expressed genes (DEGs) between diploids and tetraploids were identified from the brain, pituitary, liver, gonad and muscle using the RNA-seq method. Among these DEGs, as expected, some candidate genes, including IGF family genes, somatostatin, leptin, cyp19a1b, gthα, lhβ and fshβ, were detected, which play critical roles in the regulation of growth and gonad development of fish. In particular, the genes related to GH/IGF axis and growth factors, signal transduction, gonadal hormone and appetite were significantly increased in tetraploids. The clustering analyses of the key candidate genes showed that most key genes were up-regulated in the pituitary and gonad of tetraploids instead of other tissues. The dynamics of these key genes provide valuable genetic evidence for clarifying the growth superiority and delayed gonadal development of tetraploids. Moreover, this study also provides some clues for unveiling the genetic superiority of polyploidy species in other phenotypes. Full article
(This article belongs to the Special Issue Transcriptomics in Aquaculture: Current Status and Applications)
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14 pages, 1508 KiB  
Article
eDNA Metabarcoding Analysis of the Composition and Spatial Patterns of Fish Communities in the Sanbanxi Reservoir, China
by Xiuhui Ma, Hanwei Yang, Xue Zhong, Peng Zeng, Xianjun Zhou, Sheng Zeng, Xianghong Dong, Wenwu Min and Fujiang Huang
Sustainability 2022, 14(20), 12966; https://doi.org/10.3390/su142012966 - 11 Oct 2022
Cited by 10 | Viewed by 2443
Abstract
The construction of a reservoir dam alters the environment within its basin, including composition of the fish community, fish biodiversity, and the river ecosystem itself. This study was conducted in the Sanbanxi Reservoir and used eDNA metabarcoding technology comprising eDNA capture and extraction, [...] Read more.
The construction of a reservoir dam alters the environment within its basin, including composition of the fish community, fish biodiversity, and the river ecosystem itself. This study was conducted in the Sanbanxi Reservoir and used eDNA metabarcoding technology comprising eDNA capture and extraction, PCR amplification, sequencing and database comparison analysis, and other environmental DNA metabarcoding standardized analysis processes to characterize the composition and diversity of fish communities and assess their current status. A total of 48 species of fish were detected. Previously, 68 species of fish were screened and identified in this reservoir based on the reports of Dai and Gu. The results for fish community composition showed that species of the order Cypriniformes are still the most dominant in the Reservoir with 38 species of cyprinids, accounting for 90.81% of all OTUs. Carp were no longer the dominant species, and Spinibarbus denticulatus, Homalopteridae, Cobitidae, and Sisoridae were not detected, with the exception of Misgurnus anguillicaudatus (Cobitidae). These families have the common characteristic of being adapted to survive in fast-water, sandstone substrate habitats. The results also show that two of the sampling sites, sbx03 and sbx10, significantly differed from other sampling sites due to their geographical environment. The impact of the construction of reservoirs on freshwater fish communities is extreme, since the transformation from a lotic to a lentic habitat contributes to habitat destruction and constrains fish in movement. The change in the aquatic environment before and after the storage of water in the Sanbanxi Reservoir has reduced the number of fish species found in the reservoir, and species characteristically found in fast moving, rapids habitats are virtually absent. The profound change in the aquatic environment from that of a lotic to a lentic habitat leads to changes in the composition of fish populations in the reservoir and to a certain extent a reduction in the ecological stability and species diversity within the reservoir. Therefore, the protection of fish diversity in the reservoir is of great significance to the stability of the ecosystem. Full article
(This article belongs to the Special Issue Wetlands: Conservation, Management, Restoration and Policy)
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17 pages, 6772 KiB  
Article
Comparative Transcriptomic Analysis of Regenerated Skins Provides Insights into Cutaneous Air-Breathing Formation in Fish
by Songqian Huang, Bing Sun, Longfei Huang, Lijuan Yang, Chuanshu Liu, Jinli Zhu, Jian Gao and Xiaojuan Cao
Biology 2021, 10(12), 1294; https://doi.org/10.3390/biology10121294 - 8 Dec 2021
Cited by 4 | Viewed by 3423
Abstract
Cutaneous air-breathing is one of the air-breathing patterns in bimodal respiration fishes, while little is known about its underlying formation mechanisms. Here, we first investigated the skin regeneration of loach (Misgurnus anguillicaudatus, a cutaneous air-breathing fish) and yellow catfish (Pelteobagrus [...] Read more.
Cutaneous air-breathing is one of the air-breathing patterns in bimodal respiration fishes, while little is known about its underlying formation mechanisms. Here, we first investigated the skin regeneration of loach (Misgurnus anguillicaudatus, a cutaneous air-breathing fish) and yellow catfish (Pelteobagrus fulvidraco, a water-breathing fish) through morphological and histological observations. Then, the original skins (OS: MOS, POS) and regenerated skins (RS: MRS, PRS) when their capillaries were the most abundant (the structural foundation of air-breathing in fish) during healing, of the two fish species were collected for high-throughput RNA-seq. A total of 56,054 unigenes and 53,731 unigenes were assembled in loach and yellow catfish, respectively. A total of 640 (460 up- and 180 down-regulated) and 4446 (2340 up- and 2106 down-regulated) differentially expressed genes (DEGs) were respectively observed in RS/OS of loach and yellow catfish. Subsequently, the two DEG datasets were clustered in GO, KOG and KEGG databases, and further analyzed by comparison and screening. Consequently, tens of genes and thirteen key pathways were targeted, indicating that these genes and pathways had strong ties to cutaneous skin air-breathing in loach. This study provides new insights into the formation mechanism of cutaneous air-breathing and also offers a substantial contribution to the gene expression profiles of skin regeneration in fish. Full article
(This article belongs to the Section Marine Biology)
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15 pages, 10997 KiB  
Article
Species-Specific Duplication and Adaptive Evolution of a Candidate Sex Pheromone Receptor Gene in Weather Loach
by Lei Zhong, Weimin Wang and Xiaojuan Cao
Genes 2021, 12(12), 1845; https://doi.org/10.3390/genes12121845 - 23 Nov 2021
Viewed by 2118
Abstract
The release and sensation of sex pheromone play a role in the reproductive success of vertebrates including fish. Previous studies have shown that the weather loach Misgurnus anguillicaudatus perceives sex pheromones by olfaction to stimulate courtship behavior. It was speculated that weather loaches [...] Read more.
The release and sensation of sex pheromone play a role in the reproductive success of vertebrates including fish. Previous studies have shown that the weather loach Misgurnus anguillicaudatus perceives sex pheromones by olfaction to stimulate courtship behavior. It was speculated that weather loaches use smell to recognize intraspecific mates. However, the identification of loach pheromone receptor has not been reported. By comparative transcriptomic approach, we found that the olfactory receptor gene or114-1 was male-biasedly expressed in the olfactory epithelium of M. anguillicaudatus, M. bipartitus and the closely related species Paramisgurnus dabryanus. This sex-biased expression pattern implicated that or114-1 presumably encoded a sex pheromone receptor in loaches. M. bipartitus and P. dabryanus, like zebrafish, possess one or114-1 only. However, in M. anguillicaudatus, or114-1 has two members: Ma_or114-1a and Ma_or114-1b. Ma_or114-1a, not Ma_or114-1b, showed sex-differential expression in olfactory epithelium. Ma_or114-1b has base insertions that delayed the stop codon, causing the protein sequence length to be extended by 8 amino acids. Ma_or114-1a was subject to positive selection resulting in adaptive amino acid substitutions, which indicated that its ligand binding specificity has probably changed. This adaptive evolution might be driven by the combined effects of sexual selection and reinforcement of premating isolation between the sympatric loach species. Full article
(This article belongs to the Section Population and Evolutionary Genetics and Genomics)
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16 pages, 3690 KiB  
Article
Fibronectin 1B Gene Plays an Important Role in Loach Barbel Air-Breathing
by Bing Sun, Songqian Huang, Longfei Huang, Lijuan Yang, Jian Gao and Xiaojuan Cao
Int. J. Mol. Sci. 2021, 22(21), 11928; https://doi.org/10.3390/ijms222111928 - 3 Nov 2021
Cited by 6 | Viewed by 2773
Abstract
Loach (Misgurnus anguillicaudatus) is well known to perform air-breathing through the posterior intestine and skin. However, we find here for the first time a unique central vascular structure in the loach barbel, with a blood–gas diffusion distance as short as that [...] Read more.
Loach (Misgurnus anguillicaudatus) is well known to perform air-breathing through the posterior intestine and skin. However, we find here for the first time a unique central vascular structure in the loach barbel, with a blood–gas diffusion distance as short as that of the posterior intestine. Under acute hypoxia, the distance of loach barbels became significantly shorter. Moreover, barbel removal significantly decreased air-breathing frequency of the loach. These findings imply that the barbel is another air-breathing organ of the loach. For further investigation of loach barbel air-breathing, a transcriptome analysis of barbels with air exposure treatment was performed. A total of 2546 differentially expressed genes (DEGs) between the T-XU (air exposure) and C-XU (control) group were identified, and 13 key DEGs related to barbel air-breathing were screened out. On this foundation, sequence, expression, and location analysis results indicated an important positive role of fibronectin 1b (fn1b) in loach barbel air-breathing. We further generated an fn1b-depletion loach (MT for short) using the CRISPR/Cas9 technique. It was indicated that depletion of fn1b could weaker barbel air-breathing ability. In conclusion, due to nonlethal and regenerative characteristics, the loach barbel, a newly discovered and fn1b-related fish air-breathing organ, can be a good model for fish air-breathing research. Full article
(This article belongs to the Section Molecular Biology)
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