Search Results (10)

Xylosalsola chiwensis (Popov) Akhani & Roalson is listed in the Red Data Book of Kazakhstan as a rare species with a limited distribution, occurring in small populations in Kazakhstan, Uzbekistan, and Turkmenistan. The aim of this study is to deepen the understanding of the ecological conditions of its habitats, the floristic composition of its associated plant communities, the species’ morphological and anatomical characteristics, and its molecular phylogeny, as well as to identify the main threats to its survival. The ecological conditions of the X. chiwensis habitats include coastal sandy plains and the slopes of chinks and denudation plains with gray–brown desert soils and bozyngens on the Mangyshlak Peninsula and the Ustyurt Plateau at altitudes ranging from −3 to 270 m above sea level. The species is capable of surviving in arid conditions (less than 100 mm of annual precipitation) and under extreme temperatures (air temperatures exceeding 45 °C and soil surface temperatures above 65 °C). In X. chiwensis communities, we recorded 53 species of vascular plants. Anthropogenic factors associated with livestock grazing, industrial disturbances, and off-road vehicle traffic along an unregulated network of dirt roads have been identified as contributing to population decline and the potential extinction of the species under conditions of unsustainable land use. The morphometric traits of X. chiwensis could be used for taxonomic analysis and for identifying diagnostic morphological characteristics to distinguish between species of Xylosalsola. The most taxonomically valuable characteristics include the fruit diameter (with wings) and the cone-shaped structure length, as they differ consistently between species and exhibit relatively low variability. Anatomical adaptations to arid conditions were observed, including a well-developed hypodermis, which is indicative of a water-conserving strategy. The moderate photosynthetic activity, reflected by a thinner palisade mesophyll layer, may be associated with reduced photosynthetic intensity, which is compensated for through structural mechanisms for water conservation. The flow cytometry analysis revealed a genome size of 2.483 ± 0.191 pg (2n/4x = 18), and the phylogenetic analysis confirmed the placement of X. chiwensis within the tribe Salsoleae of the subfamily Salsoloideae, supporting its taxonomic distinctness. To support the conservation of this rare species, measures are proposed to expand the area of the Ustyurt Nature Reserve through the establishment of cluster sites. Full article

Background: Rosa L. is an economically significant genus with species that are notable for their rich content of phenolic compounds. Despite its importance, the taxonomy of Rosa remains complex and unresolved. Methods: We sequenced, assembled, and performed comparative analyses of the complete plastomes of four Rosa species: R. acicularis, R. iliensis, R. laxa, and R. spinosissima. In addition to the plastome, we sequenced the nuclear ribosomal internal transcribed spacer (ITS). Results: Plastomes ranged in size from 157,148 bp (R. iliensis) to 157,346 bp (R. laxa). In each plastome, 136 genes were annotated, comprising 90 protein-coding, 38 tRNA, and eight rRNA genes. A total of 905 SSRs were identified, ranging from 224 (R. acicularis) to 229 in R. spinosissima. Nine highly variable regions were detected, including two coding genes (rps16 and ycf1) and seven intergenic spacers (ycf3-trnS(GGA), trnT(UGU)-trnL(UAA), rpl14-rpl16, trnR(UCU)-atpA, trnD(GUC), trnG(UCC)-trnfM(CAU), and psbE-petL). Maximum Likelihood (ML) phylogenetic analyses based on the complete plastome and ycf1 gene datasets consistently resolved the Rosa species into three major clades, with strong bootstrap support. In contrast, the ML tree based on ITS resolved species into four clades but showed lower bootstrap values, indicating reduced resolution compared to plastid datasets. Conclusions: Our findings underscore the value of plastome data in resolving phylogenetic relationships within the genus Rosa. Full article

This study investigates the anatomical adaptations and ecological plasticity of C. ambiguus in extreme environmental conditions by analyzing the structural characteristics of its leaves and annual shoots collected from 12 populations in the arid regions of Mangystau, including Western Karatau, Northern Aktau, and the Tyubkaragan Peninsula. Microscopic and statistical analyses revealed significant variability in key anatomical traits, including epidermal thickness, collenchyma, primary cortex, and vascular bundle area, highlighting the species’ adaptive responses to drought, high solar radiation, and limited water availability. The epidermal thickness ranged from 14.85 µm (Pop_12 Botakan) to 22.51 µm (Pop_6 Samal), demonstrating xeromorphic adaptations for reducing transpiration. At the same time, the vascular bundle area varied from 286.06 × 10⁻³ mm² (Pop_3 Emdikorgan) to 528.51 × 10⁻³ mm² (Samal), indicating differences in water transport efficiency across populations. Despite substantial anatomical variation, the low coefficients of variation (0.31%–6.31%) suggested structural stability, reinforcing C. ambigua’s ability to maintain functional integrity under environmental stress. Canonical Correlation Analysis (CCA) confirmed that environmental factors such as soil type, elevation, and water availability significantly influenced anatomical traits. Floristic analysis revealed distinct patterns of species richness, with the highest diversity recorded in Pop_4 and Pop_7, while Pop_12 and Pop_9 exhibited lower diversity, indicating potential vulnerability. Furthermore, the identified anatomical traits could serve as key markers for selecting drought-resistant genotypes in afforestation and restoration programs. This study also highlighted the need for the long-term monitoring of C. ambigua populations to assess the impact of climate change on structural adaptations. These findings offer a framework for integrating ecological and genetic studies to refine conservation strategies for xerophytic species. Full article

The study of the genetic diversity and adaptation mechanisms of the Kazakh apricot (Prunus armeniaca L.) is essential for breeding programs and the conservation of plant genetic resources in arid environments. Despite this species’ ecological and agricultural significance, its chloroplast genome remains poorly studied due to its complex repetitive structure and secondary metabolites that hinder high-molecular-weight DNA (HMW-DNA) extraction and long-read sequencing. To address this gap, our study aims to develop and optimise sequencing protocols for P. armeniaca under arid conditions using Oxford Nanopore’s MinION technology. We successfully extracted HMW-DNA with 50–100 ng/μL concentrations and purity (A260/A280) between 1.8 and 2.0, ensuring high sequencing quality. A total of 10 GB of sequencing data was generated, comprising 155,046 reads, of which 74,733 (48.2%) had a Q-score ≥ 8. The average read length was 1679 bp, with a maximum of 31,144 bp. Chloroplast genome assembly resulted in 33,000 contigs with a total length of 1.1 Gb and a BUSCO completeness score of 97.3%. Functional annotation revealed key genes (nalC, AcrE, and mecC-type BlaZ) associated with stress tolerance and a substantial proportion (≈40%) of hypothetical proteins requiring further investigation. GC content analysis (40.25%) and GC skew data suggest the presence of specific regulatory elements linked to environmental adaptation. This study demonstrates the feasibility of using third-generation sequencing technologies to analyse complex plant genomes and highlights the genetic resilience of P. armeniaca to extreme conditions. The findings provide a foundation for breeding programs to improve drought tolerance and conservation strategies to protect Kazakhstan’s unique arid ecosystems. Full article

This article studies the morphological parameters of vegetative and generative organs of different age groups of Crataegus ambigua from four populations in Western Karatau (Mangistau region, Kazakhstan). In this study, we examined four populations: Sultan Epe, Karakozaiym, Emdikorgan, and Samal, all located in various gorges of Western Karatau. Several phylogenetic inference methods were applied, using six genetic markers to reconstruct the evolutionary relationships between these populations: atpF–atpH, internal transcribed spacer (ITS), matK, psbK–psbI, rbcL, and trnH–psbA. We also used a statistical analysis of plants’ vegetative and generative organs for three age groups (virgin, young, and adult generative). According to the age structure, Samal has a high concentration of young generative plants (42.3%) and adult generative plants (30.9%). Morphological analysis showed the significance of the parameters of the generative organs and separated the Samal population into a separate group according to the primary principal component analysis (PCoA) coordinates. The results of the floristic analysis showed that the Samal populations have a high concentration of species diversity. Comparative dendrograms using UPGMA (unweighted pair group method with arithmetic mean) showed that information gleaned from genetic markers and the psbK–psbI region can be used to determine the difference between the fourth Samal population and the other three. Full article

Alhagi pseudalhagi, which grows in the arid zone of the Atyrau region, and an assessment of the current state of its raw material reserves were studied. Botanical characteristics, ontogenetic spectra, morphological indicators, productivity, areas of thickets, and reserves of raw materials of above-ground organs were assessed. The structural parameters of these populations in the Zhangyr and Coneu Rivers valleys, in the vicinity of Imankara Mountain, and on the Taisoigan sands were studied. It was established that the species composition of the populations includes 63 species from 54 genera and 30 families. The most common species include 49 species, which, according to their occurrence in populations of A. pseudalhagi, are distributed in the following classes: 17 species—class II (0–20%); 7 species—class III (41–60%); and 2 species—classes IV (61–80%) and V (81–100%). The maximum similarity in species composition was noted between populations in the Zhangyr and Coneu Rivers valleys. The highest morphometric indicators were observed among the population of the Coneu river valley, and the lowest are located on the Taisoigan sands. Analysis of the age spectra made it possible to determine that the populations in the Zhangyr and Coneu River valleys are characterized as young and those in the area of Imankara Mountain and on the Taisoigan sands as stable and middle-aged. Full article

Leaf rust (Puccinia triticina Eriks) is a wheat disease causing substantial yield losses in wheat production globally. The identification of genetic resources with permanently effective resistance genes and the generation of mutant lines showing increased levels of resistance allow the efficient incorporation of these target genes into germplasm pools by marker-assisted breeding. In this study, new mutant (M₃ generation) lines generated from the rust-resistant variety Kazakhstanskaya-19 were developed using gamma-induced mutagenesis through 300-, 350-, and 400-Gy doses. In field trials after leaf rust inoculation, 75 mutant lines showed adult plant resistance. These lines were evaluated for resistance at the seedling stage via microscopy in greenhouse experiments. Most of these lines (89.33%) were characterized as resistant at both developmental stages. Hyperspectral imaging analysis indicated that infected leaves of wheat genotypes showed increased relative reflectance in visible and near-infrared light compared to the non-infected genotypes, with peak means at 462 and 644 nm, and 1936 and 2392 nm, respectively. Five spectral indexes, including red edge normalized difference vegetation index (RNDVI), structure-insensitive pigment index (SIPI), ratio vegetation index (RVSI), water index (WI), and normalized difference water index (NDWI), demonstrated significant potential for determining disease severity at the seedling stage. The most significant differences in reflectance between susceptible and resistant mutant lines appeared at 694.57 and 987.51 nm. The mutant lines developed were also used for the development and validation of KASP markers for leaf rust resistance genes Lr1, Lr2a, Lr3, Lr9, Lr10, and Lr17. The mutant lines had high frequencies of “a” resistance alleles (0.88) in all six Lr genes, which were significantly associated with seedling resistance and suggest the potential of favorable haplotype introgression through functional markers. Nine mutant lines characterized by the presence of “b” alleles in Lr9 and Lr10—except for one line with allele “a” in Lr9 and three mutant lines with allele “a” in Lr10—showed the progressive development of fungal haustorial mother cells 72 h after inoculation. One line from 300-Gy-dosed mutant germplasm with “b” alleles in Lr1, Lr2a, Lr10, and Lr17 and “a” alleles in Lr3 and Lr9 was characterized as resistant based on the low number of haustorial mother cells, suggesting the contribution of the “a” alleles of Lr3 and Lr9. Full article

Paeonia anomala L. is a valuable and sought-after medicinal plant for treating therapeutic pathologies. The natural habitat of P. anomala in the Republic of Kazakhstan is located in the mountainous areas of the East Kazakhstan region. P. anomala is listed in the Red Book of Kazakhstan as a rare species with limited distribution. In this regard, we studied a strategy for preserving the biological diversity of P. anomala wild population. In particular, the ecological, phytocenotic, and floristic characteristics of five P. anomala populations in East Kazakhstan were explored. The anatomical, morphological, and genetic variability of the species in various habitats was evaluated. Overall, the condition of the P. anomala population in the study region can be considered satisfactory. The floristic composition of P. anomala plant communities recorded 130 species belonging to 35 families and 101 genera. The northern slopes of mountains and shrub-grass communities with leached chernozem with high contents of N-NO₃ and P₂O₅ appeared to be optimal for P. anomala growth. Asteraceae (13%), Rosaceae (13%), Poaceae (10%), and Ranunculaceae (9%) are the major families of P. anomala flora and plant communities. The Eurasian (54%), Asian (24%), and Holarctic (15%) groups were recognized as dominant in the chronological spectrum. Amplification with iPBS primers resulted in the generation of 505 fragments, 257 of which were polymorphic. Our research results indicate that the genetic differentiation of the Kazakhstan populations is not quite as high and may indicate their long-term existence within one large population. A separate branch is formed by the P5 population, which is located separately from other populations, confirming its genetic isolation. The analysis of genetic diversity iPBS markers suggests the existence of a large, unified P. anomala population in Kazakhstan Altai. Full article

Mollusk fauna is an important component of the Caspian Sea ecosystem alongside ostracods and diatoms. These faunal proxies are essential indicators of hydrological shifts reflecting global and regional climate changes. Adding lithological, geochemical, and geochronological (radiocarbon) data, we revealed paleogeographic events of different scales recorded in the sequence of the Rybachya core from the North Caspian Sea. Here, we present the reconstruction of Mangyshlak paleovalley sediments during the Holocene multi-stage Neocaspian transgression, reflecting global and regional climate changes varying in scale and direction. The determined age of paleovalley-fill sediments, 8070 ± 110 cal yr BP and 7020 ± 140 cal yr BP, suggests that sedimentation processes with extended warming and humidification started later and lasted longer than was assumed earlier. Biological proxies indicate quasi-cyclic variability and shifts from brackish to freshwater conditions throughout the studied interval. Rybachya core was obtained from the early Khvalynian deposits. The Mangyshlak flow formed the depression and eroded the late Khvalynian deposits, which we did not observe in the core structure. It possibly collapsed into paleodepression and acted as a host material for the freshwater lentic faunal association. During the Holocene, we detected a transition from a tranquil water regime to a more dynamic one during the paleovalley gradual filling, followed by marine conditions typical for the modern Caspian Sea. Full article

High fluvial input combined with specific topographic and oceanographic settings in the Caspian Sea create favorable conditions for contourite deposition. For the first time in its middle portion, contourite deposits have been observed in high-resolution seismic profiles. Various types of contourite drifts and mixed depositional systems have been revealed on the lower slope and in the adjacent basin, some of which are accompanied by sediment wave fields. The deposition of contourites or turbidites and their lateral distribution is controlled by sea-floor topography and oceanographic processes, as well as the modern activity of gravity flows downslope on the western Caucasian slope and in the channel system on the Mangyshlak Sill. The contourite drifts and sediment wave fields form several contourite depositional systems, which seem to merge in the Caspian contourite depositional complex. This occurs near the foot of slopes of the Derbent Basin and is related to the counterclockwise circum-Caspian current in the Middle Caspian Sea. The fact that the Caspian Sea is the largest lake in the world makes this region a significant area for research into the “lake contourites” issue. The Caspian Sea is an important oil-producing area, and sedimentary processes related to the contourite and turbidite can be a source of potential geohazards in the construction and exploitation of underwater engineering structures Full article