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Keywords = Lolium sp.

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20 pages, 2415 KiB  
Article
Intercropping with Gramineous Plants in Nutrient Solutions as a Tool to Optimize the Use of Iron in Brassica oleracea
by Teresa Saavedra, Maribela Pestana, João Costa, Paula Gonçalves, David Fangueiro, José Paulo Da Silva and Pedro José Correia
Plants 2025, 14(14), 2215; https://doi.org/10.3390/plants14142215 - 17 Jul 2025
Viewed by 311
Abstract
This study aimed to evaluate the impact of intercropping Brassica oleracea. with three perennial grasses (Poa pratensis L., Lolium perenne L., and Festuca rubra L.) under varying levels of iron (Fe) availability (Fe0, Fe1 and Fe5) in nutrient solutions. The research [...] Read more.
This study aimed to evaluate the impact of intercropping Brassica oleracea. with three perennial grasses (Poa pratensis L., Lolium perenne L., and Festuca rubra L.) under varying levels of iron (Fe) availability (Fe0, Fe1 and Fe5) in nutrient solutions. The research focused on biomass accumulation, photosynthetic efficiency, root development, nutrient uptake, and oxidative stress response. In the absence of Fe, Brassica sp. exhibited chlorosis, reduced biomass, and increased ferric chelate reductase (FCR) enzyme activity as an adaptive response. Brassica plants intercropped with Poa sp. maintained higher chlorophyll (Chl) levels and photosystem II efficiency (Fv/Fm values), mitigating Fe deficiency effects. Catalase activity and polyphenol production varied with intercropping species, indicating differential stress response mechanisms. Intercropping improved Zn, Mn, and P accumulation, with Poa sp. facilitating greater Zn and Mn uptake. Intercropping Brassica sp. with specific grass species offers potential agronomic benefits by improving Fe use efficiency, mitigating stress, and enhancing nutrient uptake. Future research should focus on optimizing intercropping combinations for sustainable agricultural practices. Full article
(This article belongs to the Section Plant Nutrition)
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25 pages, 2841 KiB  
Article
Assessing Microbial Activity and Rhizoremediation in Hydrocarbon and Heavy Metal-Impacted Soil
by Robert Conlon, David N. Dowling and Kieran J. Germaine
Microorganisms 2025, 13(4), 848; https://doi.org/10.3390/microorganisms13040848 - 8 Apr 2025
Cited by 1 | Viewed by 847
Abstract
Rhizodegradation enhances pollutant degradation through plant–microbe interactions in the rhizosphere. Plant roots provide a colonisation surface and root exudates that promote microbial abundance and activity, facilitating organic pollutant breakdown via direct microbial degradation and co-metabolism. This study assessed the rhizodegradation of weathered petroleum [...] Read more.
Rhizodegradation enhances pollutant degradation through plant–microbe interactions in the rhizosphere. Plant roots provide a colonisation surface and root exudates that promote microbial abundance and activity, facilitating organic pollutant breakdown via direct microbial degradation and co-metabolism. This study assessed the rhizodegradation of weathered petroleum hydrocarbons (PHCs) in heavy metal co-contaminated soil in a microcosm-scale pot trial. Treatments included Sinapis alba, Lolium perenne, a L. perenne + Trifolium repens mix, and Cichorium intybus, alongside a non-planted control. After 14 weeks, PHC concentrations were analysed via gas chromatography, and rhizosphere microbial communities were characterised through sequencing. Sinapis alba achieved the highest PHC degradation (68%), significantly exceeding the non-planted control (p < 0.05, Kruskal–Wallis test). Hydrocarbon-degrading bacteria, including KCM-B-112, C1-B045, Hydrogenophaga, unclassified Saccharimonadales sp., and Pedobacter, were enriched in the rhizosphere, with the uncultured clade mle1-27 potentially contributing indirectly. Metals analysis of plant tissues showed that mustard could accumulate copper more than lead and zinc, despite higher concentrations of zinc and lead in the soil. These results highlight the potential of S. alba for rhizoremediation in PHC–heavy metal co-contaminated soils. Full article
(This article belongs to the Topic Environmental Bioengineering and Geomicrobiology)
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16 pages, 1662 KiB  
Article
Identifying Root-Associated Endophytic Fungi and Bacteria in Festuca and Lolium Grasses from a Site in Lithuania
by Violeta Stakelienė, Izolda Pašakinskienė, Saulė Matijošiūtė, Justas Martūnas and Gitana Štukėnienė
Microorganisms 2025, 13(4), 799; https://doi.org/10.3390/microorganisms13040799 - 31 Mar 2025
Viewed by 575
Abstract
This study investigates the diversity and distribution of root endophyte fungi and bacteria across Festuca and Lolium grasses, including open-grassland and forest species. The species examined include perennials such as Festuca arundinacea, F. gigantea, F. pratensis, Lolium perenne, and [...] Read more.
This study investigates the diversity and distribution of root endophyte fungi and bacteria across Festuca and Lolium grasses, including open-grassland and forest species. The species examined include perennials such as Festuca arundinacea, F. gigantea, F. pratensis, Lolium perenne, and L. perenne × F. gigantea hybrids and the annuals L. temulentum and L. multiflorum. A total of 21 fungal species (60 isolates) and 26 bacterial taxa (59 isolates) were recovered in the culture (PDA medium for fungi and LB for bacteria) from the root cuttings of these grasses. Microdochium bolleyi fungi and Bacillus sp. bacteria were the most prevalent endophytes, with each being identified in five of the seven plant species examined. The annuals L. multiflorum and L. temulentum exhibited a higher abundance of endophytes than that in their perennial relatives, suggesting the benefits of microbial associations in supporting their short life cycles. The woodland F. gigantea demonstrated the highest fungal endophyte diversity, with six species identified. In contrast, the open-grassland perennials F. arundinacea, F. pratensis, and L. perenne hosted only one to two species. Two Basidiomycota, Coprinellus disseminatus and Sistotrema brinkmannii, were exclusively obtained from the roots of the forest grass F. gigantea. Notably, the open-grassland perennial F. arundinacea exhibited the highest bacterial diversity, with nine species present. However, it showed the lowest fungal diversity, with only one species detected. Overall, our study reveals distinct patterns of fungal and bacterial endophyte diversity in the roots of Festuca and Lolium grasses, with variations linked to host species, growth type traits, and ecological adaptations. Among the root-derived endophytes isolated, several fungi and bacteria are potential candidates for plant growth promotion and biocontrol. Therefore, the findings of this study provide potential implications for improved grassland management and crop breeding strategies aimed at specific climate and/or soil conditions. Full article
(This article belongs to the Special Issue Rhizosphere Bacteria and Fungi That Promote Plant Growth)
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15 pages, 1133 KiB  
Article
Biopesticide Compounds from an Endolichenic Fungus Xylaria sp. Isolated from the Lichen Hypogymnia tubulosa
by Fotios A. Lyssaios, Azucena González-Coloma, María Fe Andrés and Carmen E. Díaz
Molecules 2025, 30(3), 470; https://doi.org/10.3390/molecules30030470 - 22 Jan 2025
Cited by 3 | Viewed by 1278
Abstract
Endolichenic fungi represent an important ecological group of microorganisms that form associations with photobionts in the lichen thallus. These endofungi that live in and coevolve with lichens are known for synthesizing secondary metabolites with novel structures and diverse chemical skeletons making them an [...] Read more.
Endolichenic fungi represent an important ecological group of microorganisms that form associations with photobionts in the lichen thallus. These endofungi that live in and coevolve with lichens are known for synthesizing secondary metabolites with novel structures and diverse chemical skeletons making them an unexplored microbial community of great interest. As part of our search for new phytoprotectants, in this work, we studied the endolichenic fungus Xylaria sp. isolated from the lichen Hypogymnia tubulosa, which grows as an epiphyte on the bark of the endemic Canarian tree Pinus canariensis. From the extract of the liquid fermentation, we isolated two unreported piliformic derivatives, (+)-9-hydroxypiliformic acid (1) and (+)-8-hydroxypiliformic acid (2), along with four previously reported compounds, (+)-piliformic acid (3), hexylaconitic acid A anhydride (4), 2-hydroxyphenylacetic acid (5), and 4-hydroxyphenylacetic acid (6). Their structures were elucidated based on NMR and HRESIMS data. The extract and the isolated compounds were tested for their insect antifeedant (Myzus persicae, Rhopalosiphum padi, and Spodoptera littoralis), antifungal (Alternaria alternata, Botrytis cinerea, and Fusarium oxysporum), nematicidal (Meloidogyne javanica), and phytotoxic effects on mono- and dicotyledonous plant models (Lolium perenne and Lactuca sativa). Compounds 4, 5, and 6 were effective antifeedants against M. persicae and 4 was also active against R. padi. Moreover, 3 and 4 showed antifungal activity against B. cinerea and 4 was the only nematicidal. The extract had a strong phytotoxic effect on L. sativa and L. perenne growth, with compounds 3, 4, and 5 identified as the phytotoxic agents, while at low concentrations compounds 3 and 4 stimulated L. sativa root growth. Full article
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13 pages, 958 KiB  
Article
Artemisia herba-alba Essential Oil: Chemical Composition, Phytotoxic Activity and Environmental Safety
by Beáta Baranová, Daniela Gruľová, Flavio Polito, Vincent Sedlák, Mária Konečná, Marta Mydlárová Blaščáková, Ismail Amri, Vincenzo De Feo and Janka Poráčová
Plants 2025, 14(2), 242; https://doi.org/10.3390/plants14020242 - 16 Jan 2025
Cited by 4 | Viewed by 1462
Abstract
Weeds cause a decrease in the quantity and quality of agricultural production and economic damage to producers. The prolonged use of synthetic pesticides causes problems of environmental pollution, the possible alteration of agricultural products and problems for human health. For this reason, the [...] Read more.
Weeds cause a decrease in the quantity and quality of agricultural production and economic damage to producers. The prolonged use of synthetic pesticides causes problems of environmental pollution, the possible alteration of agricultural products and problems for human health. For this reason, the scientific community’s search for products of natural origin, which are biodegradable, safe for human health and can act as valid alternatives to traditional herbicides, is growing. Essential oils can have useful implications in agriculture by acting as effective alternatives to chemical herbicides. In this work, the chemical composition of an EO from Artemisia herba-alba and its herbicidal properties were studied on two weeds (Lolium multiflorum and Trifolium pratense) and two crops (Brassica napus and Hordeum vulgare) and its environmental safety was also assessed using three model organisms: Chaoborus sp., Tubifex tubifex and Eisenia foetida. The principal component of the EO was camphor (26.02%), with α- and β-thujone (9.60 and 8.38%, respectively), 1,8-cineole (8.02%), piperitenone (5.29%) and camphene (4.95%) as the main components. The EO demonstrated variable phytotoxic effects with a dose-dependent manner, inhibiting both the germination and the radical elongation of the tested seeds, and was also found to be environmentally safe for the selected organisms. The results lay the foundation for considering this EO as a potential weed control agent. Full article
(This article belongs to the Special Issue Phytochemistry and Pharmacological Properties of Medicinal Plants)
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14 pages, 2130 KiB  
Article
Comparative Characterization of Three Homologous Glutathione Transferases from the Weed Lolium perenne
by Annie Kontouri, Farid Shokry Ataya, Panagiotis Madesis and Nikolaos Labrou
Foods 2024, 13(22), 3584; https://doi.org/10.3390/foods13223584 - 9 Nov 2024
Viewed by 1124
Abstract
The comparative analysis of homologous enzymes is a valuable approach for elucidating enzymes’ structure–function relationships. Glutathione transferases (GSTs, EC. 2.5.1.18) are crucial enzymes in maintaining the homeostatic stability of plant cells by performing various metabolic, regulatory, and detoxifying functions. They are promiscuous enzymes [...] Read more.
The comparative analysis of homologous enzymes is a valuable approach for elucidating enzymes’ structure–function relationships. Glutathione transferases (GSTs, EC. 2.5.1.18) are crucial enzymes in maintaining the homeostatic stability of plant cells by performing various metabolic, regulatory, and detoxifying functions. They are promiscuous enzymes that catalyze a broad range of reactions that involve the nucleophilic attack of the activated thiolate of glutathione (GSH) to electrophilic compounds. In the present work, three highly homologous (96–98%) GSTs from ryegrass Lolium perenne (LpGSTs) were identified by in silico homology searches and their full-length cDNAs were isolated, cloned, and expressed in E. coli cells. The recombinant enzymes were purified by affinity chromatography and their substrate specificity and kinetic parameters were determined. LpGSTs belong to the tau class of the GST superfamily, and despite their high sequence homology, their substrate specificity displays remarkable differences. High catalytic activity was determined towards hydroxyperoxides and alkenals, suggesting a detoxification role towards oxidative stress metabolites. The prediction of the structure of the most active LpGST by molecular modeling allowed the identification of a non-conserved residue (Phe215) with key structural and functional roles. Site-saturation mutagenesis at position 215 and the characterization of eight mutant enzymes revealed that this site plays pleiotropic roles, affecting the affinity of the enzyme for the substrates, catalytic constant, and structural stability. The results of the work have improved our understanding of the GST family in L. perenne, a significant threat to agriculture, sustainable food production, and safety worldwide. Full article
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13 pages, 928 KiB  
Article
Valorization of Mediterranean Species of Thyme for the Formulation of Bio-Herbicides
by Rym Boukhalfa, Claudia Ruta, Saida Messgo-Moumene, Generosa J. Calabrese, Maria Pia Argentieri and Giuseppe De Mastro
Agronomy 2024, 14(9), 2077; https://doi.org/10.3390/agronomy14092077 - 11 Sep 2024
Cited by 3 | Viewed by 1034
Abstract
This study focused on the evaluation of the phytotoxic activity of four essential oils (EOs) from the Mediterranean species of Thymus sp. pl., namely Thymus algeriensis Boiss. et Reut., T. ciliatus Desf. subspecies coloratus (Boiss. et Reut.) Batt., T. vulgaris L. ecotype Fasano [...] Read more.
This study focused on the evaluation of the phytotoxic activity of four essential oils (EOs) from the Mediterranean species of Thymus sp. pl., namely Thymus algeriensis Boiss. et Reut., T. ciliatus Desf. subspecies coloratus (Boiss. et Reut.) Batt., T. vulgaris L. ecotype Fasano and T. vulgaris cultivar L. Varico 3, to identify new biomolecules with herbicide potential. The chemical characterization of EOs was performed by GC-MS. The evaluation of the phytotoxicity of the EOs was conducted under in vitro conditions, and the inhibition of germination and seedling growth of Lolium perenne L. and Amaranthus retroflexus L. were assessed. Five concentrations (100, 250, 500, 750 and 1000 µL/100 mL) were considered. Phytochemical analysis revealed a great diversity of compounds. T. algeriensis and T. ciliatus EOs were characterized by the absence of carvacrol and a low content of thymol in T. ciliatus. On the contrary, T. vulgaris ecotype Fasano and T. vulgaris cultivar Varico 3 were characterized by an important content of p-cymene, thymol and carvacrol. All the EOs expressed a potent phytotoxic activity against the tested species. The total inhibition of seed germination and seedling growth were recorded for the highest concentrations of all the EOs. T. vulgaris ecotype Fasano expressed the most effective activity. Full article
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15 pages, 1397 KiB  
Article
Phosphate-Solubilizing Microorganisms Stimulate Physiological Responses of Perennial Ryegrass to Phosphorus Deficiency with Assistance of Straw Compost
by Chunkai Li, Zhaojuan Zheng, Yexin Zhao, Hongxin Wang, Peng Li, Jingjing Xu, Jiaguo Jiao, Li Xu, Feng Hu and Huixin Li
Agronomy 2024, 14(5), 1008; https://doi.org/10.3390/agronomy14051008 - 10 May 2024
Cited by 2 | Viewed by 1406
Abstract
Biofertilizers with phosphate-solubilizing microorganism (PSM) inoculations have been suggested to diminish the limitation of phosphorus (P) deficiency in plants. However, their applications in agriculture are restricted due to the inconstant effects of various PSMs. Proper carriers for the inoculations may overcome this shortcoming [...] Read more.
Biofertilizers with phosphate-solubilizing microorganism (PSM) inoculations have been suggested to diminish the limitation of phosphorus (P) deficiency in plants. However, their applications in agriculture are restricted due to the inconstant effects of various PSMs. Proper carriers for the inoculations may overcome this shortcoming and improve PSMs’ effectiveness. The objective of this study was to investigate whether straw compost, a type of organic material, can act as a carrier for improving the efficiencies of phosphate-solubilizing bacteria and fungi named Acinetobacter sp. and Aspergillus niger, respectively, in soils. We monitored the growth and cellular physiological responses of one type of model plants, named perennial ryegrass (Lolium perenne L.), under four soil treatments, including non-fertilization, PSM inoculation alone, straw compost addition alone, and the combined applications of both PSMs and straw compost. We found the combined treatments significantly improved the growth by 14.7% for shoot height and 79.7% for shoot weight, respectively, on average. P and potassium (K) uptakes of ryegrass were also increased by 102.5% and 65.3%, respectively, after the application of both PSMs and straw compost. Furthermore, physiological properties, such as photosynthetic efficiency and P-transportation capacity, of ryegrass were also significantly improved under combined treatments when compared to other treatments, regardless of the types of PSM included. The piecewise structural equation model further indicated that PSM inoculation and straw compost input are synergistically contributing to the nutrient uptake of ryegrass through many direct and indirect ways. We propose that straw compost is a good carrier material for PSMs’ survival and would improve their plant growth promotion ability in soil. Our results provide valuable insights into the exploitation and utilization of P-biofertilizers in agriculture. Full article
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19 pages, 1850 KiB  
Article
Reuse of Soils Fertilized with Ash as Recycling Derived Fertilizer Revealed Strong Stimulation of Microbial Communities Involved in P Mobilization in Lolium perenne Rhizospheres
by Lea Deinert and Achim Schmalenberger
Environments 2024, 11(3), 49; https://doi.org/10.3390/environments11030049 - 4 Mar 2024
Cited by 2 | Viewed by 2348
Abstract
Circular economy recycling-derived fertilizers (RDF) have the potential to replace linear economy fertilizers such as unsustainable superphosphates. Here, effects of ash RDF treatments in Irish grassland cultivation were investigated in a simulated second growing season. Soil fertilized in a preceding pot trial with [...] Read more.
Circular economy recycling-derived fertilizers (RDF) have the potential to replace linear economy fertilizers such as unsustainable superphosphates. Here, effects of ash RDF treatments in Irish grassland cultivation were investigated in a simulated second growing season. Soil fertilized in a preceding pot trial with superphosphate (SP), poultry-litter ash (PLA) and sewage-sludge ash (SSA) at P concentration of 60 kg P ha−1 and a P-free control (SP0) was reused in a microcosm trial. Lolium perenne was cultivated for 54 days in six replicates with a full complement of micro- and macro-nutrients other than P. PLA treatments provided higher dry weight shoot yields than SP0, while SSA and SP overlapped with SP0 and PLA. Most probable number (MPN) analysis showed that phosphonate- and phytate-utilizing bacterial abundance was significantly increased in PLA. Alkaline (phoD) phosphomonoesterase gene fragments were significantly more abundant (qPCR) in the ashes than the superphosphate or P-free control. Bacterial communities were significantly affected by the P application. Similarly, a significant separation of treatments was confirmed in a canonical correspondence analysis of the phoD-harboring community. The genera Streptomyces and Xanthomonas were significantly higher in abundance in the ash RDFs. These results demonstrated the potential benefits of ash RDF treatments as an alternative P source. Full article
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20 pages, 2374 KiB  
Article
Short-Term Impact of Recycling-Derived Fertilizers on Their P Supply for Perennial Ryegrass (Lolium perenne)
by Lea Deinert, Israel Ikoyi, Bastian Egeter, Patrick Forrestal and Achim Schmalenberger
Plants 2023, 12(15), 2762; https://doi.org/10.3390/plants12152762 - 25 Jul 2023
Cited by 5 | Viewed by 2233
Abstract
Various nutrient recycling technologies are currently under development in order to alleviate the dependency of non-renewable raw material for the production of mineral phosphorus fertilizers commonly used in agriculture. The resulting products, such as struvites and ashes, need to be assessed for their [...] Read more.
Various nutrient recycling technologies are currently under development in order to alleviate the dependency of non-renewable raw material for the production of mineral phosphorus fertilizers commonly used in agriculture. The resulting products, such as struvites and ashes, need to be assessed for their application as so-called recycling-derived fertilizers (RDFs) in the agricultural sector prior to commercialization. Here, we conducted a short-term (54 days) trial to investigate the impact of different phosphorus fertilizers on plant growth and the soil P cycling microbiota. Lolium perenne was grown with application of superphosphate (SP) as inorganic fertilizer, two ashes (poultry litter ash (PLA) and sewage sludge ash (SSA)), and two struvites (municipal wastewater struvite (MWS) and commercial CrystalGreen® (CGS)) applied at 20 and 60 kg P ha−1 in four replicates. A P-free control (SP0) was also included in the trial. Struvite application increased plant dry weights, and available P acid phosphatase activity was significantly improved for struvites at the high P application rate. The ash RDFs showed a liming effect at 60 kg P ha−1, and PLA60 negatively affected acid phosphatase activity, while PLA20 had significantly lower phoD copy numbers. P mobilization from phosphonates and phytates was not affected. TCP solubilization was negatively affected by mineral SP fertilizer application at both P concentrations. The bacterial (16S and phoD) communities were only marginally affected by the tested P fertilizers. Overall, struvites appeared to be a suitable substitute for superphosphate fertilization for Irish L. perenne pastures. Full article
(This article belongs to the Special Issue Ecology and Nutrient Cycling in Grasslands)
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25 pages, 4384 KiB  
Article
Effect of Biochar on Metal Distribution and Microbiome Dynamic of a Phytostabilized Metalloid-Contaminated Soil Following Freeze–Thaw Cycles
by Maja Radziemska, Mariusz Z. Gusiatin, Agnieszka Cydzik-Kwiatkowska, Aurelia Blazejczyk, Vinod Kumar, Antonin Kintl and Martin Brtnicky
Materials 2022, 15(11), 3801; https://doi.org/10.3390/ma15113801 - 26 May 2022
Cited by 11 | Viewed by 2962
Abstract
In the present paper the effectiveness of biochar-aided phytostabilization of metal/metalloid-contaminated soil under freezing–thawing conditions and using the metal tolerating test plant Lolium perenne L. is comprehensively studied. The vegetative experiment consisted of plants cultivated for over 52 days with no exposure to [...] Read more.
In the present paper the effectiveness of biochar-aided phytostabilization of metal/metalloid-contaminated soil under freezing–thawing conditions and using the metal tolerating test plant Lolium perenne L. is comprehensively studied. The vegetative experiment consisted of plants cultivated for over 52 days with no exposure to freezing–thawing in a glass greenhouse, followed by 64 days under freezing–thawing in a temperature-controlled apparatus and was carried out in initial soil derived from a post-industrial urban area, characterized by the higher total content of Zn, Pb, Cu, Cr, As and Hg than the limit values included in the classification provided by the Regulation of the Polish Ministry of Environment. According to the substance priority list published by the Toxic Substances and Disease Registry Agency, As, Pb, and Hg are also indicated as being among the top three most hazardous substances. The initial soil was modified by biochar obtained from willow chips. The freeze–thaw effect on the total content of metals/metalloids (metal(-loid)s) in plant materials (roots and above-ground parts) and in phytostabilized soils (non- and biochar-amended) as well as on metal(-loid) concentration distribution/redistribution between four BCR (community bureau of reference) fractions extracted from phytostabilized soils was determined. Based on metal(-loid)s redistribution in phytostabilized soils, their stability was evaluated using the reduced partition index (Ir). Special attention was paid to investigating soil microbial composition. In both cases, before and after freezing–thawing, biochar increased plant biomass, soil pH value, and metal(-loid)s accumulation in roots, and decreased metal(-loid)s accumulation in stems and total content in the soil, respectively, as compared to the corresponding non-amended series (before and after freezing–thawing, respectively). In particular, in the phytostabilized biochar-amended series after freezing–thawing, the recorded total content of Zn, Cu, Pb, and As in roots substantially increased as well as the Hg, Cu, Cr, and Zn in the soil was significantly reduced as compared to the corresponding non-amended series after freezing–thawing. Moreover, exposure to freezing–thawing itself caused redistribution of examined metal(-loid)s from mobile and/or potentially mobile into the most stable fraction, but this transformation was favored by biochar presence, especially for Cu, Pb, Cr, and Hg. While freezing–thawing greatly affected soil microbiome composition, biochar reduced the freeze–thaw adverse effect on bacterial diversity and helped preserve bacterial groups important for efficient soil nutrient conversion. In biochar-amended soil exposed to freezing–thawing, psychrotolerant and trace element-resistant genera such as Rhodococcus sp. or Williamsia sp. were most abundant. Full article
(This article belongs to the Special Issue Recent Progress of Biochar and Biomass Pyrolysis)
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9 pages, 2403 KiB  
Article
Phytoremediation of Secondary Salinity in Greenhouse Soil with Astragalus sinicus, Spinacea oleracea and Lolium perenne
by Shumei Cai, Sixin Xu, Deshan Zhang, Zishi Fu, Hanlin Zhang and Haitao Zhu
Agriculture 2022, 12(2), 212; https://doi.org/10.3390/agriculture12020212 - 1 Feb 2022
Cited by 10 | Viewed by 2654
Abstract
Phytoremediation is an effective and ecological method used to control soil secondary salinization in greenhouses. However, the plant–soil interactions for phytoremediation have not been studied sufficiently. In this study, three crop species (Astragalus sinicus (CM), Spinacea oleracea (SP) and Lolium perenne (RY)) [...] Read more.
Phytoremediation is an effective and ecological method used to control soil secondary salinization in greenhouses. However, the plant–soil interactions for phytoremediation have not been studied sufficiently. In this study, three crop species (Astragalus sinicus (CM), Spinacea oleracea (SP) and Lolium perenne (RY)) were compared in a greenhouse experiment. The results showed that all three crops increased the soil microbial biomass, the abundance of beneficial microorganisms, available phosphorus and soil pH, and reduced the soil salt content. The crop nutrient accumulation was positively correlated with the relative abundance of bacterial 16S rRNA sequences in the soil. CM and RY respectively increased the relative abundances of norank_f_Gemmatimonadaceae and norank_f_Anaerolineaceae within the soil bacterial community, while SP increased the relative abundances of Gibellulopsis within the fungal community. Correlation analysis revealed that pH and total dissolved salts were the vital factors affecting soil microbial communities in the secondary salinized soil. Our results suggest that phytoremediation could effectively alleviate secondary salinization by regulating the balance of soil microbial community composition and promoting crop nutrient accumulation. Full article
(This article belongs to the Special Issue Innovative Conservation Cropping Systems and Practices)
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20 pages, 3824 KiB  
Article
Genome-Wide Association Mapping of Crown and Brown Rust Resistance in Perennial Ryegrass
by Mattia Fois, Andrea Bellucci, Marta Malinowska, Morten Greve, Anja Karine Ruud and Torben Asp
Genes 2022, 13(1), 20; https://doi.org/10.3390/genes13010020 - 22 Dec 2021
Cited by 3 | Viewed by 4574
Abstract
A population of 239 perennial ryegrass (Lolium perenne L.) genotypes was analyzed to identify marker-trait associations for crown rust (Puccinia coronata f. sp. lolii) and brown rust (Puccinia graminis f. sp. loliina) resistance. Phenotypic data from field trials [...] Read more.
A population of 239 perennial ryegrass (Lolium perenne L.) genotypes was analyzed to identify marker-trait associations for crown rust (Puccinia coronata f. sp. lolii) and brown rust (Puccinia graminis f. sp. loliina) resistance. Phenotypic data from field trials showed a low correlation (r = 0.17) between the two traits. Genotypes were resequenced, and a total of 14,538,978 SNPs were used to analyze population structure, linkage disequilibrium (LD), and for genome-wide association study. The SNP heritability (h2SNP) was 0.4 and 0.8 for crown and brown rust resistance, respectively. The high-density SNP dataset allowed us to estimate LD decay with the highest possible precision to date for perennial ryegrass. Results showed a low LD extension with a rapid decay of r2 value below 0.2 after 520 bp on average. Additionally, QTL regions for both traits were detected, as well as candidate genes by applying Genome Complex Trait Analysis and Multi-marker Analysis of GenoMic Annotation. Moreover, two significant genes, LpPc6 and LpPl6, were identified for crown and brown rust resistance, respectively, when SNPs were aggregated to the gene level. The two candidate genes encode proteins with phosphatase activity, which putatively can be induced by the host to perceive, amplify and transfer signals to downstream components, thus activating a plant defense response. Full article
(This article belongs to the Special Issue Applying Genome Sequencing Technologies to Crop Breeding)
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19 pages, 2162 KiB  
Article
Genomic Prediction and Genotype-by-Environment Interaction Analysis of Crown and Stem Rust in Ryegrasses in European Multi-Site Trials
by Mattia Fois, Marta Malinowska, Franz Xaver Schubiger and Torben Asp
Agronomy 2021, 11(6), 1119; https://doi.org/10.3390/agronomy11061119 - 30 May 2021
Cited by 7 | Viewed by 4009
Abstract
Climate change calls for novel approaches to include environmental effects in future breeding programs for forage crops. A set of ryegrasses (Lolium) varieties was evaluated in multiple European environments for crown rust (Puccinia coronata f. sp. lolii) and stem [...] Read more.
Climate change calls for novel approaches to include environmental effects in future breeding programs for forage crops. A set of ryegrasses (Lolium) varieties was evaluated in multiple European environments for crown rust (Puccinia coronata f. sp. lolii) and stem rust (P. graminis f. sp. graminicola) resistance. Additive Main Effect and Multiplicative Interaction (AMMI) analysis revealed significant genotype (G) and environment (E) effects as well as the interaction of both factors (G × E). Genotypes plus Genotype-by-Environment interaction (GGE) analysis grouped the tested environments in multiple mega-environments for both traits suggesting the presence of an environmental effect on the ryegrasses performances. The best performing varieties in the given mega-environments showed high resistance to crown as well as stem rust, and overall, tetraploid varieties performed better than diploid. Furthermore, we modeled G × E using a marker x environment interaction (M × E) model to predict the performance of varieties tested in some years but not in others. Our results showed that despite the limited number of varieties, the high number of observations allowed us to predict both traits’ performances with high accuracy. The results showed that genomic prediction using multi environmental trials could enhance breeding programs for the crown and stem rust in ryegrasses. Full article
(This article belongs to the Special Issue Genotype× Environment Interactions in Crop Breeding)
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21 pages, 306 KiB  
Review
Genomics Applied to the Analysis of Flowering Time, Abiotic Stress Tolerance and Disease Resistance: A Review of What We Have Learned in Lolium spp.
by Elisa Pasquali and Gianni Barcaccia
Agriculture 2020, 10(10), 425; https://doi.org/10.3390/agriculture10100425 - 23 Sep 2020
Cited by 2 | Viewed by 2886
Abstract
Flowering time, abiotic stress tolerance and disease resistance are important agronomic traits of forage species like Lolium spp. Understanding the genetic control of these traits is enabled by the combination of genomic tools with conventional breeding techniques. Flowering time in this genus represents [...] Read more.
Flowering time, abiotic stress tolerance and disease resistance are important agronomic traits of forage species like Lolium spp. Understanding the genetic control of these traits is enabled by the combination of genomic tools with conventional breeding techniques. Flowering time in this genus represents a complex trait due to the differences in the primary induction requirements among the species. In total, 36 QTLs (Quantitative Trait Locus) were identified across all seven linkage groups of Italian and perennial ryegrass involved in the flowering pathways, with several putative orthologous/homologous genes that have been characterized in other major crops. From the perspective of climate change, abiotic stress tolerance has become an essential feature; many QTLs that are involved in the control of plant responses have been identified, and transcriptional studies focusing on drought tolerance reported several DEGs (Differentially Expressed Genes) involved in carbon and lipid metabolism and signal transduction. Due to the incidence of microbial diseases, QTLs useful to developing cultivars resistant to bacterial wilt (Xanthomonas translucens pv. graminis), ryegrass crown rust (Puccinia coronata f. sp. Lolii) and gray leaf spot (Magnaporthe grisea/oryzae) have been mapped in both L. perenne and L. multiflorum populations. Due to the great importance of Lolium species, especially as forage crops, additional information about the three aforementioned agronomic traits is needed. Full article
(This article belongs to the Section Crop Genetics, Genomics and Breeding)
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