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Keywords = Leuconostoc lactis

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12 pages, 1734 KiB  
Article
Lipid-Modulating Effects of Sargassum fulvellum Fermented by Lactococcus lactis KCCM12759P and Leuconostoc mesenteroides KCCM12756P in Ovariectomized Mice
by Hyun-Sol Jo, Young-Eun Cho and Sun-Mee Hong
Nutrients 2025, 17(15), 2527; https://doi.org/10.3390/nu17152527 - 31 Jul 2025
Viewed by 169
Abstract
Background/Objectives: Estrogen deficiency contributes to dyslipidemia and visceral adiposity, increasing cardiovascular risk in postmenopausal women. Sargassum fulvellum (Sf), a brown seaweed rich in bioactive compounds, possesses lipid-regulating properties that may be enhanced by lactic acid bacteria fermentation. This study aimed to evaluate [...] Read more.
Background/Objectives: Estrogen deficiency contributes to dyslipidemia and visceral adiposity, increasing cardiovascular risk in postmenopausal women. Sargassum fulvellum (Sf), a brown seaweed rich in bioactive compounds, possesses lipid-regulating properties that may be enhanced by lactic acid bacteria fermentation. This study aimed to evaluate the effects of fermented S. fulvellum (SfLlLm), prepared using Lactococcus lactis and Leuconostoc mesenteroides, on lipid metabolism and adipose tissue remodeling in an ovariectomized (OVX) mouse model of estrogen deficiency. Methods: Female C57BL/6 mice underwent ovariectomy and were fed an AIN-76A diet supplemented with either unfermented Sf or SfLlLm for eight weeks. Sham-operated and 17β-estradiol-treated OVX groups served as controls. Serum lipid levels—total cholesterol, triglycerides, LDL-C, and HDL-C—were assessed, and histological analysis of visceral adipose tissue was conducted to evaluate adipocyte morphology. Results: OVX-induced estrogen deficiency led to increased total cholesterol, triglycerides, and LDL-C, along with hypertrophic changes in visceral adipocytes. Supplementation with fermented Sargassum fulvellum (SfLlLm) markedly improved these parameters, reducing total cholesterol by 6.7%, triglycerides by 9.3%, and LDL-C by 52.9%, while increasing HDL-C by 17.5% compared to the OVX controls. SfLlLm also normalized visceral adipocyte size and distribution. These effects were comparable to or exceeded those of 17β-estradiol treatment. Conclusions: Fermented SfLlLm ameliorated dyslipidemia and visceral adiposity under estrogen-deficient conditions. These findings support its potential as a functional dietary intervention for managing postmenopausal lipid disorders and associated metabolic complications. Full article
(This article belongs to the Special Issue Diet and Nutrition: Metabolic Diseases---2nd Edition)
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11 pages, 344 KiB  
Communication
Lactic Acid Bacteria Succession, Identification and Antilisterial Capacity in Traditionally Produced Dry-Fermented Chicken Sausage
by Nevijo Zdolec, Marta Kiš, Mladenka Vukšić, Hrvoje Mazija, Ivana Bazina and Snježana Kazazić
Processes 2025, 13(7), 2216; https://doi.org/10.3390/pr13072216 - 11 Jul 2025
Viewed by 362
Abstract
The production of fermented sausages from poultry meat using traditional technologies and natural maturation conditions is a major challenge. The aim of this study was to identify indigenous microbiota with antilisterial activity from an innovative, additive-free, traditionally fermented chicken sausage. Isolates (n [...] Read more.
The production of fermented sausages from poultry meat using traditional technologies and natural maturation conditions is a major challenge. The aim of this study was to identify indigenous microbiota with antilisterial activity from an innovative, additive-free, traditionally fermented chicken sausage. Isolates (n = 88) of lactic acid bacteria (LAB) were collected during maturation and subjected to MALDI-TOF mass spectrometry identification. The capacity to combat Listeria was screened against five strains using the agar well diffusion method in 63 selected LAB isolates. MALDI-TOF mass spectrometry identified four different LAB genera, namely Enterococcus, Lactococcus, Leuconostoc and Lactobacillus, the proportions of which differed significantly during the production phases (p < 0.001). Enterococcus faecalis was the most prevalent LAB species in the initial sausage dough. The presence of lactococci (Lactococcus lactis) and enterococci was detected during the 14- and 30-day ripening period and was gradually displaced by leuconostocs and lactobacilli. Lactobacilli appeared to be abundant during the central and late maturation phases, and consisted of only two species—Latilactobacillus sakei and Latilactobacillus curvatus. In total, 38 LAB isolates (60%) showed antilisterial activity toward at least one Listeria indicator strain. The proportions of antilisterial LAB differed significantly during sausage maturation. Inhibitory activity against all indicator Listeria was detected in the neutralized cell-free supernatants of five strains of Enterococcus faecalis, two L. sakei strains and one Leuconostoc mesenteroides strain. The antilisterial activity observed in the indigenous LAB revealed the possible role of L. sakei as a bioprotective culture, as well as the role of Ln. mesenteroides and E. faecalis as bacteriocin producers, for practical applications. Full article
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18 pages, 618 KiB  
Article
Both, Limited and Often Fatal Systemic Infections Caused by Leuconostoc spp. in Older, Previously Ill Men Are Usually Acquired in the Outpatient Setting
by Johanna Butt, Cristian Arva and Stefan Borgmann
Microorganisms 2025, 13(7), 1626; https://doi.org/10.3390/microorganisms13071626 - 10 Jul 2025
Viewed by 350
Abstract
Leuconostoc spp. are vancomycin-resistant Gram-positive cocci that are used in food production and as pre- and probiotics. However, Leuconostoc spp. can also cause infections. In the present study, the records of patients with Leuconostoc spp. detection between January 2012 and March 2025 were [...] Read more.
Leuconostoc spp. are vancomycin-resistant Gram-positive cocci that are used in food production and as pre- and probiotics. However, Leuconostoc spp. can also cause infections. In the present study, the records of patients with Leuconostoc spp. detection between January 2012 and March 2025 were analyzed, inclusive of the underlying risk factors. Leuconostoc spp. was isolated from 32 patients (21 male, 11 females), including nine patients with blood culture evidence. In the majority of patients, Leuconostoc spp. were obtained on the day of admission to the hospital or in the first few days thereafter, arguing against nosocomial acquisition. The median age of men and women (65.3 and 67.8 years) was similar, but seven of the 14 male patients over the age of 65 had the bacteria in blood culture. The female patients with blood culture evidence had suffered from peripartum thrombophlebitis and from anorexia nervosa (BMI 8.8 kg/m2). In contrast, men with Leuconostoc spp. in the blood culture had severe, limiting underlying diseases. While the two women survived, five of the seven blood-culture-positive men died. Overall, our results show that Leuconostoc spp. is mainly acquired in outpatient settings, but men are at a higher risk of acquisition. Colonized men over the age of 60 with severe underlying diseases have a high risk of systemic infection with a fatal outcome. Full article
(This article belongs to the Special Issue Lactic Acid Bacteria in Food Fermentation and Biotechnology)
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15 pages, 2096 KiB  
Article
Evaluation of the Antimicrobial Effect of Bioprotective Lactic Acid Bacteria Cultures Against Listeria monocytogenes in Vacuum-Packaged Cold-Smoked Rainbow Trout (Oncorhynchus mykiss) at Different Temperatures
by Javier Sánchez-Martín, Salud María Serrano-Heredia, Arícia Possas, Antonio Valero and Elena Carrasco
Foods 2025, 14(11), 1951; https://doi.org/10.3390/foods14111951 - 30 May 2025
Viewed by 579
Abstract
The growing demand for Ready-to-Eat (RTE) fish products increases the need for effective safety measures against Listeria monocytogenes, a pathogen associated with high fatality rates. This study evaluated the bioprotective potential of lactic acid bacteria (LAB) strains, including probiotic ones, against L. [...] Read more.
The growing demand for Ready-to-Eat (RTE) fish products increases the need for effective safety measures against Listeria monocytogenes, a pathogen associated with high fatality rates. This study evaluated the bioprotective potential of lactic acid bacteria (LAB) strains, including probiotic ones, against L. monocytogenes in cold-smoked rainbow trout. Two LAB cocktails were tested: a commercial mix (LC–LL) and a vegetable-derived mix (LAB2–LP15). LC–LL effectively inhibited L. monocytogenes at both static (5 °C) and dynamic (4–20 °C) conditions by the inhibitory effect of the bacteriocin leucocin (≈4 log unit growth inhibition). In contrast, LAB2–LP15 was effective only at 5 °C (≈2 log unit growth inhibition), maintaining the best sensory characteristics. These findings support the use of LAB as natural bioprotective agents in RTE fish, combining food safety and sensory preservation. Full article
(This article belongs to the Section Food Microbiology)
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20 pages, 4387 KiB  
Article
Kefir Probiotic-Enriched Non-Alcoholic Beers: Microbial, Genetic, and Sensory-Chemical Assessment
by Alessandra Souza Marques do Nascimento, Raquel Nunes Almeida da Silva, Pedro Paulo Lordelo Guimarães Tavares, Adriana Silva Borges, Marina Passos Soares Cardoso, Ana Katerine de Carvalho Lima Lobato, Rogéria Comastri de Castro Almeida and Karina Teixeira Magalhães-Guedes
Beverages 2025, 11(3), 75; https://doi.org/10.3390/beverages11030075 - 21 May 2025
Viewed by 798
Abstract
Probiotic microorganisms from sugary kefir were incorporated into Brazilian non-alcoholic beers to enhance their functional and nutritional properties through aerobic static fermentation over 24 h. Non-alcoholic beers inoculated with sugary kefir showed appropriate acidity (pH reduction from ~3.74 to ~3.52), color, and microbial [...] Read more.
Probiotic microorganisms from sugary kefir were incorporated into Brazilian non-alcoholic beers to enhance their functional and nutritional properties through aerobic static fermentation over 24 h. Non-alcoholic beers inoculated with sugary kefir showed appropriate acidity (pH reduction from ~3.74 to ~3.52), color, and microbial balance, along with excellent sensory acceptance (scores of 6.9–8.4 on a 9-point hedonic scale). The kefir microbiota included Lacticaseibacillus paracasei, Lacticaseibacillus casei, Lacticaseibacillus paracasei subsp. paracasei, Lacticaseibacillus paracasei subsp. tolerans, Lactobacillus delbrueckii subsp. lactis, Lentilactobacillus parabuchneri, Lentilactobacillus kefiri, Lactococcus lactis, Leuconostoc citreum, Acetobacter lovaniensis, and yeasts such as Saccharomyces cerevisiae, Kluyveromyces lactis, Lachancea meyersii, and Kazachstania aerobia. Genetic analysis confirmed the absence of undesirable or pathogenic microorganisms. Fermentation led to reductions in sucrose (~0.35 to ~0.22 g/L) and °Brix (~5.55 to ~3.80), with increases in lactic acid (~0.55 to ~1.25 g/L) and acetic acid (~0.08 to ~0.14 g/L), confirming active microbial metabolism. Ethanol levels remained within legal limits for non-alcoholic beverages. The process preserved sensory attributes while enriching the beverage with well-documented kefir microorganisms. These findings highlight sugary kefir as a promising biotechnological tool to enhance the functional profile of non-alcoholic beers without compromising their sensory quality. Full article
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22 pages, 301 KiB  
Article
Comparative Genomics of Transporter Proteins in Lactic Acid Bacteria
by Zhongkai Yi, Min Xu, Wanjing Hong, Zhirong Zhang, Xu Yao, Zhijiang Zhou and Ye Han
Processes 2025, 13(4), 1204; https://doi.org/10.3390/pr13041204 - 16 Apr 2025
Viewed by 493
Abstract
Although lactic acid bacteria (LABs) possess unique metabolic and physiological characteristics that have crucial effects on the transport of substances both into and out of the cell, there is still a lack of systematic research on membrane transporters in LABs and their roles [...] Read more.
Although lactic acid bacteria (LABs) possess unique metabolic and physiological characteristics that have crucial effects on the transport of substances both into and out of the cell, there is still a lack of systematic research on membrane transporters in LABs and their roles in material transport. In this study, genomic data for the species Lactobacillus delbrueckii, Streptococcus thermophilus, Leuconostoc lactis, Pediococcus lactis, Lactococcus garvieae, and Bifidobacterium lactis were analyzed to identify the associated transport systems, including what kind of substances are transported. As part of a comparative genomics approach, we used the G-BLAST and AveHAS programs in the TCDB database to screen for transport proteins and clarify the distribution of these proteins in different Lactobacillus strains, allowing for further prediction of their transport substrates. Studies have shown that the distributions of these transporters differ among the selected LAB strains. Through screening and tabulation, we found that the content of transporters in the six LAB proteomes was greater than 20%, with the dominance of the large transporter group indicating complex metabolic and probiotic effects. Furthermore, it was found that the LAB strains contain a variety of homologs of drug-efflux proteins, which may make them resistant to antibiotics, as well as a large number of toxin-related transporters. This study allowed for reasonable predictions of the roles of toxin-related proteins in LABs, and further research on these proteins may be valuable for understanding the probiotic effects of LABs that arise through competition. The study of LAB transporters and the prediction of their functions might support a better understanding of the metabolic and physiological activities of these bacteria. In the future, we aim to extract DNA from laboratory strains and perform PCR amplification using suitable primers designed by us. Through comparison of the obtained gene sequences with those reported in this study, we can explore the differences among them. Full article
(This article belongs to the Section Chemical Processes and Systems)
26 pages, 2132 KiB  
Article
Co-Cultivation of Potential Probiotic Strains Isolated from Water Kefir for Fermented Green Tea Beverage
by Ameni Abdi, Emna Gatri, Justine Guilbaud, Hassib Bouallagui, Khaled Fadhlaoui, Ghislain Garrait and Lamia Ayed
Fermentation 2025, 11(4), 169; https://doi.org/10.3390/fermentation11040169 - 24 Mar 2025
Cited by 1 | Viewed by 881
Abstract
This study aimed to isolate and characterize microorganisms from water kefir beverage for their functional properties. Five lactic acid bacteria (LAB) strains were isolated: three Leuconostoc citreum strains (LB4, LB6, LB13) and two Lactococcus lactis strains (LB5, LB25), identified via 16S rRNA sequencing, [...] Read more.
This study aimed to isolate and characterize microorganisms from water kefir beverage for their functional properties. Five lactic acid bacteria (LAB) strains were isolated: three Leuconostoc citreum strains (LB4, LB6, LB13) and two Lactococcus lactis strains (LB5, LB25), identified via 16S rRNA sequencing, along with three Saccharomyces cerevisiae yeast strains (Y7, Y9, Y10), confirmed by 18S rDNA sequencing. Due to the high genetic and phenotypic similarity within each species, one representative strain from each (LB4, LB5, Y9) was selected for further analysis. These strains showed potential probiotic properties, including tolerance to acid and bile, high auto-aggregation, and hydrophobicity. The LAB strains were sensitive to gentamicin, and their supernatants inhibited the growth of tested pathogenic bacteria. The cumulative probiotic potential (CPP) scores were 93.33% for Lc. citreum LB4 and L. lactis LB5, and 100% for S. cerevisiae Y9. Furthermore, the fermentation potential of these strains was evaluated in a green tea beverage using three co-culture formulations. Among the formulations tested, the BF1 beverage, fermented by F1 (40% LB4, 40% LB5, and 20% Y9), demonstrated optimal physicochemical, microbiological, and sensory properties. Notably, while the individual strains did not show anti-inflammatory activity, the BF1 beverage formulation exhibited this effect, suggesting a synergistic interaction during fermentation. Full article
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22 pages, 1313 KiB  
Article
Impact of Selected Starters and Cassava Varieties on the Proximate, Rheological, and Volatile Profiles of Lafun
by Abosede O. Fawole, Kimon-Andreas G. Karatzas, Jane K. Parker and Colette C. Fagan
Foods 2025, 14(4), 660; https://doi.org/10.3390/foods14040660 - 15 Feb 2025
Viewed by 1053
Abstract
Spontaneous fermentation is currently used to produce lafun from cassava, leading to inconsistent product quality and decreased safety. Using starter cultures and optimising the selection of the raw materials can overcome this. This study evaluated the impact of various lactic acid bacteria (LAB) [...] Read more.
Spontaneous fermentation is currently used to produce lafun from cassava, leading to inconsistent product quality and decreased safety. Using starter cultures and optimising the selection of the raw materials can overcome this. This study evaluated the impact of various lactic acid bacteria (LAB) starters and varieties of cassava (bitter: IBA30527; vitamin A fortified bitter: IBA011371; and sweet: TMEB117) on the proximate, rheological, and volatile profiles of lafun. The varieties were fermented with four selected LAB (two strains of Weissella koreensis, Lactococcus lactis, and Leuconostoc mesenteroides). The use of fortified cassava showed higher potential to improve the quality of lafun. The combination of fortified cassava and Leuconostoc mesenteroides gave the highest nutritional value (ash: 4.37% cf. 1.33%; protein: 3.08% cf. 0.87%; and fibre: 7.43% cf. 1.43%). Fermenting the fortified cassava with Weissella koreensis-2 produced lafun gruel with the best viscoelastic properties, indicating an overall better product quality. The fortified cassava fermented with combined cultures of W. koreensis-1 and L. lactis resulted in a product with lower levels of carboxylic acids (cheesy) and lipid oxidation products (fried, rancid) but higher concentrations of carotenoid-derived compounds (fruity). The use of LAB in the controlled fermentation of fortified cassava could be a sustainable alternative to improve the physical, nutritional, and flavour properties of lafun. Full article
(This article belongs to the Section Food Physics and (Bio)Chemistry)
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18 pages, 1234 KiB  
Article
Microbiota Composition in Raw Drinking Milk from Vending Machines: A Case Study in Croatia
by Nataša Mikulec, Jasminka Špoljarić, Dijana Plavljanić, Monica Darrer, Fabijan Oštarić, Jasenka Gajdoš Kljusurić, Khan Mohd. Sarim, Nevijo Zdolec and Snježana Kazazić
Fermentation 2025, 11(2), 55; https://doi.org/10.3390/fermentation11020055 - 24 Jan 2025
Viewed by 1128
Abstract
According to the Regulation on the Quality of Fresh Raw Milk, up to 100,000 microorganisms/mL are allowed in milk obtained by the hygienic milking of healthy cows, which represents the natural microbiota of milk and has no negative impact on the overall quality [...] Read more.
According to the Regulation on the Quality of Fresh Raw Milk, up to 100,000 microorganisms/mL are allowed in milk obtained by the hygienic milking of healthy cows, which represents the natural microbiota of milk and has no negative impact on the overall quality of milk. However, with unprofessional handling during and after milking, milk is easily contaminated and becomes a potential medium for the growth and reproduction of microorganisms, some of which can be harmful to human health. Since the number of aerobic mesophilic bacteria in milk is one of the indicators of the hygienic quality of milk, their number and identification are fundamental in the control of raw milk from milk vending machines. From five different milk vending machines, 35 samples were collected, from which the total number of aerobic mesophilic bacteria was determined using the flow cytometry method and the classic method of counting colonies on a nutrient medium. Randomly selected colonies based on morphological differences (n = 700) were identified by comparing MALDI-TOF mass spectra with reference spectra stored in the microorganism library and processing using the MALDI Biotyper computer program. Thirty-eight genera and eighty-one bacterial species and five genera and seven fungal species were successfully identified. The species that predominate are Lactococcus lactis, Hafnia alvei, Escherichia coli, Leuconostoc mesenteroides, and Kluyveromyces lactis. By integrating advanced methods like flow cytometry and MALDI-TOF MS for precise microbial identification, this study highlights the need for enhanced monitoring and adherence to hygienic standards in raw milk vending machines. This approach not only safeguards public health but also supports consumer confidence in milk quality from vending machines. Full article
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13 pages, 2617 KiB  
Article
Anti-Inflammatory and Osteogenic Effects of Vitamin K from Sargassum fulvellum Fermented by Lactococcus lactis KCCM12759P and Leuconostoc mesenteroides KCCM12756P
by Yejin Sim, Hyun-Sol Jo, Choong-Gon Kim, Young-Eun Cho, Jungwoo Yang and Sun-Mee Hong
Fermentation 2024, 10(11), 569; https://doi.org/10.3390/fermentation10110569 - 7 Nov 2024
Cited by 1 | Viewed by 1358
Abstract
Vitamin K (VitK) is a vital nutrient that is newly recognized to support bone and cardiovascular health. As a nutraceutical, VitK is produced via plant extraction and bacterial fermentation. This study examined the potential anti-inflammatory and osteogenic benefits of VitK, i.e., VitK1 (phylloquinone; [...] Read more.
Vitamin K (VitK) is a vital nutrient that is newly recognized to support bone and cardiovascular health. As a nutraceutical, VitK is produced via plant extraction and bacterial fermentation. This study examined the potential anti-inflammatory and osteogenic benefits of VitK, i.e., VitK1 (phylloquinone; PK) and VitK2 (menaquinone; MKs), derived from Sargassum fulvellum fermented by Lactococcus lactis and Leuconostoc mesenteroides (SfLlLm) using lipopolysaccharide (LPS)-induced Raw264.7, MC3T3-E1 cells, and ovariectomized (OVX) mice. MK4, MK7, and MK9, as well as PK, were effectively acquired from SfLlLm and analyzed. SfLlLm_VitK reduced levels of proinflammatory cytokine in LPS-induced Raw264.7 cells and induced an osteogenesis regulating factor in MC3T3-E1 cells. In OVX mice, SfLlLm feeding reduced plasma levels of alkaline phosphatase, phosphate, and the pro-collagen type I alpha 2 gene (pro-Col1a2) while elevating cancellous bone volume and trabecular numbers. Accordingly, SfLlLm, comprising MKs, may be a candidate for preventing and treating immune and bone diseases. Full article
(This article belongs to the Special Issue Fermentation: 10th Anniversary)
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18 pages, 8986 KiB  
Article
Metagenomic and Metabolomic Profiling Reveals the Differences of Flavor Quality between Hongqu Rice Wines Fermented with Gutian Qu and Wuyi Qu
by Zihua Liang, Shiyun Chen, Hao Wang, Qi Wu, Weiling Guo, Li Ni and Xucong Lv
Foods 2024, 13(19), 3114; https://doi.org/10.3390/foods13193114 - 29 Sep 2024
Cited by 1 | Viewed by 1460
Abstract
Jiuqu (starter) makes an important contribution to the formation of the flavor characteristics of Hongqu rice wine (HQW). Gutian Qu (GTQ) and Wuyi Qu (WYQ) are two kinds of Jiuqu commonly used in HQW brewing, but the comparison of the two kinds of [...] Read more.
Jiuqu (starter) makes an important contribution to the formation of the flavor characteristics of Hongqu rice wine (HQW). Gutian Qu (GTQ) and Wuyi Qu (WYQ) are two kinds of Jiuqu commonly used in HQW brewing, but the comparison of the two kinds of HQW is still insufficient at present. The objective of this study was to compare the dynamic changes of amino acids (AAs), higher alcohols (HAs), bioamines (BAs), volatile flavor compounds (VFCs), and microbial communities in HQW fermentation, with GTQ and WYQ as starter. This study used an automatic amino acid analyzer, GC, HPLC, and GC-MS to detect AAs, HAs, Bas, and VFCs during fermentation; metagenomic sequencing technology was used to elucidate the microbial community and its functional characteristics. The results showed that the contents of AAs and HAs in HQW brewed with WYQ (WYW) were significantly higher than those in HQW brewed with GTQ (GTW). On the contrary, the majority of BAs in GTW were significantly higher than those in WYW. The composition of VFCs in WYW and GTW were obviously different, as most of the VFCs were notably enriched in WYW, while ethyl caproate, isoamyl acetate, ethyl heptanoate, ethyl nonanoate, 1-decanol, citronellol, phenethyl acetate, and hexanoic acid were more abundant in GTW. Burkholderia gladioli, Pantoea dispersa, Weissella cibaria, Monascus purpureus, and Saccharomyces cerevisiae were the predominant microbial populations in GTW brewing at the species level, while Sphingomonas sp., Kosakonia cowanii, Enterobacter asburiae, Leuconostoc lactis, Aspergillus niger, and Saccharomyces cerevisiae were the dominant microbial species in WYW brewing. The abundance of functional genes involved in BAs biosynthesis were much higher in GTW brewing, while the abundance of functional genes related to the metabolism of characteristic VFCs were much higher in WYW brewing. Collectively, these findings provided evidence for elucidating the effects of Jiuqu and microbial communities on HQW flavor quality, and laid a solid foundation for the improvement of HQW flavor quality. Full article
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16 pages, 2541 KiB  
Article
Metatranscriptomic Analysis of Argentinian Kefirs Varying in Apparent Viscosity
by Diego Lisboa Rios, Ana Agustina Bengoa, Patrícia Costa Lima da Silva, César Silva Santana Moura, Graciela Liliana Garrote, Analía Graciela Abraham, Gabriel da Rocha Fernandes, Jacques Robert Nicoli, Elisabeth Neumann and Álvaro Cantini Nunes
Appl. Microbiol. 2024, 4(3), 1150-1164; https://doi.org/10.3390/applmicrobiol4030078 - 24 Jul 2024
Cited by 1 | Viewed by 1377
Abstract
Comparative metatranscriptomics of the bacterial and yeast communities of two milk kefir beverages (MKAA1 and MKAA2) was carried out. They were obtained by fermentation with two different frozen stocks of the kefir grain CIDCA AGK1, differing in rheological features and production of organic [...] Read more.
Comparative metatranscriptomics of the bacterial and yeast communities of two milk kefir beverages (MKAA1 and MKAA2) was carried out. They were obtained by fermentation with two different frozen stocks of the kefir grain CIDCA AGK1, differing in rheological features and production of organic acids. We hypothesised that the differences in their physicochemical and rheological properties might be due to the microbial activity in each product. The dominance of lactic acid bacteria, yeast, and a marginal amount of acetic acid bacteria characterised the microbiome. The bacterial families Lactobacillaceae and Streptococcaceae accounted for almost all of the bacterial gene transcripts, with Lactobacillus helveticus, L. kefiranofaciens, L. gallinarum, and Lactococcus lactis being most frequent in the microbiome of the MKAA1 beverage and L. kefiranofaciens, Lc. Lactis, and Leuconostoc mesenteroides being the most prevalent in MKAA2. Dipodascaceae and Saccharomycetaceae were the leading yeast families, represented by Yarrowia lipolytica, Saccharomyces unisporus, and Kluyveromyces marxianus. MKAA1 and MKAA2 shared >75% KEGG Ortologs (KOs) in their bacteria and yeast libraries. The considerable decreases in total expressed genes (KEGG Ortologs) assigned to Lactobacillus helveticus and L. gallinarum might be related to the variations in the rheological features of the beverages, probably by compromising the interrelations with L. kefiranofaciens, which might explain the variations in the rheological features of the beverages. Full article
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21 pages, 3098 KiB  
Article
Study of the Microbiome of the Cretan Sour Cream Staka Using Amplicon Sequencing and Shotgun Metagenomics and Isolation of Novel Strains with an Important Antimicrobial Potential
by Konstantinos Papadimitriou, Marina Georgalaki, Rania Anastasiou, Athanasia-Maria Alexandropoulou, Eugenia Manolopoulou, Georgia Zoumpopoulou and Effie Tsakalidou
Foods 2024, 13(7), 1129; https://doi.org/10.3390/foods13071129 - 8 Apr 2024
Cited by 2 | Viewed by 2437
Abstract
Staka is a traditional Greek sour cream made mostly from spontaneously fermented sheep milk or a mixture of sheep and goat milk. At the industrial scale, cream separators and starter cultures may also be used. Staka is sometimes cooked with flour to absorb [...] Read more.
Staka is a traditional Greek sour cream made mostly from spontaneously fermented sheep milk or a mixture of sheep and goat milk. At the industrial scale, cream separators and starter cultures may also be used. Staka is sometimes cooked with flour to absorb most of the fat. In this study, we employed culture-based techniques, amplicon sequencing, and shotgun metagenomics to analyze the Staka microbiome for the first time. The samples were dominated by Lactococcus or Leuconostoc spp. Most other bacteria were lactic acid bacteria (LAB) from the Streptococcus and Enterococcus genera or Gram-negative bacteria from the Buttiauxella, Pseudomonas, Enterobacter, Escherichia-Shigella, and Hafnia genera. Debaryomyces, Kluyveromyces, or Alternaria were the most prevalent genera in the samples, followed by other yeasts and molds like Saccharomyces, Penicillium, Aspergillus, Stemphylium, Coniospotium, or Cladosporium spp. Shotgun metagenomics allowed the species-level identification of Lactococcus lactis, Lactococcus raffinolactis, Streptococcus thermophilus, Streptococcus gallolyticus, Escherichia coli, Hafnia alvei, Streptococcus parauberis, and Enterococcus durans. Binning of assembled shotgun reads followed by recruitment plot analysis of single reads could determine near-complete metagenome assembled genomes (MAGs). Culture-dependent and culture-independent analyses were in overall agreement with some distinct differences. For example, lactococci could not be isolated, presumably because they had entered a viable but not culturable (VBNC) state or because they were dead. Finally, several LAB, Hafnia paralvei, and Pseudomonas spp. isolates exhibited antimicrobial activities against oral or other pathogenic streptococci, and certain spoilage and pathogenic bacteria establishing their potential role in food bio-protection or new biomedical applications. Our study may pave the way for additional studies concerning artisanal sour creams to better understand the factors affecting their production and the quality. Full article
(This article belongs to the Special Issue New Insights into Milk and Dairy Products: Quality and Sustainability)
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20 pages, 3313 KiB  
Article
Postbiotics of Naturally Fermented Synbiotic Mixture of Rice Water Aids in Promoting Colonocyte Health
by Charumathi Anbalagan, Sangeetha Kadapakkam Nandabalan, Pavithra Sankar, Prasanna Srinivasan Rajaram, Karthick Govindaraj, Secunda Rupert and Jeswanth Sathyanesan
Biomolecules 2024, 14(3), 344; https://doi.org/10.3390/biom14030344 - 13 Mar 2024
Cited by 6 | Viewed by 8363
Abstract
The eubiotic state of the gut microbiota is primarily brought about by various probiotic species that colonize the gut. It is becoming very clear that the probiotic-metabolite mixtures in the gut luminal milieu is central in establishing cross-kingdom signalling networks to maintain gut-multi-organ [...] Read more.
The eubiotic state of the gut microbiota is primarily brought about by various probiotic species that colonize the gut. It is becoming very clear that the probiotic-metabolite mixtures in the gut luminal milieu is central in establishing cross-kingdom signalling networks to maintain gut-multi-organ axes health. Culturally, different fermented foods and beverages have been regional staples since ancient times, and are known to be enriched with probiotics. However, regional variations including the environment, the staple food source (prebiotics), and fermentation methods, among other factors, influence the fermenting probiotic species. Fermented rice water (FRW), an economical, easy to make, simple beverage is a rich source of synbiotics. Therefore, consumption of fermented rice water allows for the intake of a variety of region-specific live probiotics. The secondary metabolites (postbiotics) present in such symbiotic mixtures may also contribute toward maintaining normal intestinal cellular functions. In this study, we highlight that regional staples such as rice consumed in their fermented form may hold promise in alleviating gut-related diseases. Our results show that simple overnight fermentation of cooked edible rice enables the growth of probiotic bacterial species belonging to the Lactic Acid Bacteria group (Leuconostoc lactis, Weisella confusa, Weisella cibacria, Lactococcus lactis, lactococcus taiwanensis, Lactobacillus fermentum, Lactobacillus nagelii, and Lactobacillus delbrueckii ssp. indicus). Metabolomic analysis of the overnight fermented and over two-nights fermented rice water identified more than 200 postbiotic metabolites. Our results show that postbiotics contributing to energy metabolism, gut-multiorgan axes, and microbial paraprobiotics are enriched in the overnight (~10 h) fermented rice water as compared to the over two-nights fermented rice water. Functional analysis via gene expression studies for nutrient absorption (mct-1 and mct-2) and barrier integrity (occludin and zo-1) reveals significant upregulation of these genes upon FRW treatment of HT29 colon cells. This study is a first-of-its-kind to demonstrate the proof-of-principle that postbiotics of naturally fermented rice water positively modulates colonocyte health. Full article
(This article belongs to the Special Issue Probiotics and Their Metabolites)
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Abstract
Association between Fermented Milk Consumption and the Gut Microbiome in Finnish Adults
by Mirkka Maukonen, Kari Koponen, Aki Havulinna, Niina Kaartinen, Teemu Niiranen, Veikko Salomaa and Satu Männistö
Proceedings 2023, 91(1), 389; https://doi.org/10.3390/proceedings2023091389 - 4 Mar 2024
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Abstract
Background and objectives: The consumption of fermented milk products has been considered beneficial for health. The moderate use of fermented milk products can also be part of environmentally sustainable diets. Findings on fermented milk and gut microbiome associations, however, have been inconsistent, and [...] Read more.
Background and objectives: The consumption of fermented milk products has been considered beneficial for health. The moderate use of fermented milk products can also be part of environmentally sustainable diets. Findings on fermented milk and gut microbiome associations, however, have been inconsistent, and studies conducted on population-based samples are scarce. We examined whether the consumption of fermented milk (e.g., yoghurt, buttermilk, curdled milk) is related to individual gut microbiota diversity (alpha diversity), compositional differences in gut microbiota (beta diversity), or bacterial species abundances in Finnish adults. Methods: We used data from the National FINRISK/FINDIET 2002 study (final n = 1273, aged 25–65 years, 55% women). Diet was assessed with 48 h dietary recalls. Gut microbiota were analyzed using shallow shotgun sequencing. In our statistical analyses, multiple linear regression, permutational multivariate ANOVAs, and multivariate analysis using linear models (MaAsLin) were utilized. Our analyses were adjusted for sex, age, smoking, BMI, energy intake, and potentially gut microbiota-altering medicines (metformin and psycholeptics/analeptics). Furthermore, those treated with antibiotics within the past six months or who were pregnant were excluded from the final sample. Results: The mean consumption of fermented milk was 107 (SD 145) g/day. Fermented milk consumption was not associated with individual microbial diversity (alpha diversity, beta = 0.02, sd = 0.01, p = 0.18) or compositional variation between individuals’ gut microbiota (beta diversity, R2 = 0.001, p = 0.57). In species-level analysis, fermented milk consumption was associated with 15 bacterial species, of which 11 were positively associated, and 4 were negatively associated. The positive associations mainly included known lactic acid-producing/probiotic species such as Bifidobacterium longum, Streptococcus thermophilus, Lactococcus lactis, Leuconostoc mesenteroides, and Lactobacillus delbrueckii. The negative associations included species mainly from genus Prevotella, which has been associated with plant-rich diets. Discussion: No associations were found between fermented milk consumption and microbial diversity measures. In line with previous studies in the literature, however, our species-level findings indicated that fermented milk consumption was positively associated with the abundance of several beneficial genera, including Lactobacillus and Bifidobacterium, whereas findings regarding Prevotella species abundances have been inconsistent. Further studies are needed to explore the importance of these findings in relation to the role of fermented milk in healthy and sustainable diets. Full article
(This article belongs to the Proceedings of The 14th European Nutrition Conference FENS 2023)
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