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19 pages, 753 KB  
Article
A Pilot Study on Multigenic Thrombophilic Risk in Recurrent Pregnancy Loss: Interactions Between MTHFR Polymorphisms and Classical Thrombophilia-Associated SNPs
by Oana-Viola Badulescu, Monica Hancianu, Cornelia Mircea, Andrei Bojan, Dragos-Florin Tesoi, Maria Cristina Vladeanu, Manuela Ciocoiu, Otilia-Elena Frasinariu, Carmen Elena Plesoianu, Dan Iliescu-Halitchi and Iris Bararu Bojan
Int. J. Mol. Sci. 2026, 27(7), 3112; https://doi.org/10.3390/ijms27073112 (registering DOI) - 29 Mar 2026
Abstract
Recurrent spontaneous miscarriages represent a significant reproductive challenge, often associated with inherited thrombophilia. Among the genetic factors involved, methylenetetrahydrofolate reductase (MTHFR) gene polymorphisms have been increasingly studied. The two main variants, MTHFR C677T and MTHFR A1298C, have been suggested to contribute [...] Read more.
Recurrent spontaneous miscarriages represent a significant reproductive challenge, often associated with inherited thrombophilia. Among the genetic factors involved, methylenetetrahydrofolate reductase (MTHFR) gene polymorphisms have been increasingly studied. The two main variants, MTHFR C677T and MTHFR A1298C, have been suggested to contribute to thrombotic events and adverse pregnancy outcomes. This study aims to evaluate the higher prevalence and potential role of MTHFR gene polymorphisms (C677T and A1298C) in the etiology of recurrent spontaneous miscarriages in pregnant women with inherited thrombophilia, in comparison with the classical thrombophilia-associated SNPs—F5 Leiden and the F2 G20210A gene mutation. In this single-center retrospective observational study, 64 women with recurrent pregnancy loss and confirmed inherited thrombophilia were evaluated. Genomic DNA extracted from peripheral blood samples was analyzed for thrombophilia-associated polymorphisms, including F5 Leiden (G1691A), F2 G20210A, MTHFR C677T, MTHFR A1298C, SERPINE1 4G/5G, and F13A1 V34L, using a real-time PCR-based Bosphore® Thrombophilia Panel. The presence of MTHFR C677T and A1298C polymorphisms was investigated and compared to the incidence of F5 Leiden and F2 G20210A gene SNPs. Associations between genotypes and clinical characteristics, including the number of pregnancy losses, were assessed using chi-square tests, Kruskal–Wallis analysis, and logistic regression models. The most frequently detected polymorphisms were heterozygous variants of the MTHFR gene, with prevalences of 57.8% for C677T and 53.1% for A1298C. Homozygous MTHFR C677T was significantly associated with a higher number of pregnancy losses (Kruskal–Wallis test, p = 0.001). Similarly, the homozygous MTHFR A1298C genotype showed a significant association with increased miscarriage frequency (p = 0.012). Classical thrombophilic mutations were less frequent, with F2 G20210A identified in only two patients, although its presence was associated with a higher number of pregnancy losses (p = 0.030). These findings suggest that combined thrombophilic polymorphisms may contribute to recurrent pregnancy loss, although larger studies are required to confirm these observations. Full article
(This article belongs to the Special Issue Role of Mutations and Polymorphisms in Various Diseases: 2nd Edition)
17 pages, 804 KB  
Article
Geological Isolation Drives Genetic Divergence of Hopea celebica in Sulawesi’s Karst and Ultrabasic Forests
by Nasri Nasri and Koichi Kamiya
Forests 2026, 17(4), 429; https://doi.org/10.3390/f17040429 (registering DOI) - 28 Mar 2026
Abstract
Hopea celebica Burck is an endangered dipterocarp endemic to Sulawesi, Indonesia, occurring in two ecologically contrasting habitats: karst and ultrabasic forests. These environments differ markedly in soil composition and topography, potentially driving ecological specialization and genetic divergence. To investigate the genetic variation and [...] Read more.
Hopea celebica Burck is an endangered dipterocarp endemic to Sulawesi, Indonesia, occurring in two ecologically contrasting habitats: karst and ultrabasic forests. These environments differ markedly in soil composition and topography, potentially driving ecological specialization and genetic divergence. To investigate the genetic variation and genetic structure of this species, we applied newly developed microsatellite (SSR) markers, together with the chloroplast DNA sequences of the trnL–trnF region. Genotypes at 15 SSR loci were determined for 255 individuals collected from six populations covering the range of the species’ distribution across karst and ultrabasic forests. Genetic diversity was consistently higher in karst than in ultrabasic populations. DIYABC and VarEff analyses revealed a historical bottleneck and earlier recovery in the karst populations. Analysis of molecular variance (AMOVA) revealed that 35% of the genetic variation was partitioned between habitat types (FRT = 0.345, p = 0.001). Bayesian clustering (STRUCTURE), principal coordinate analysis (PCoA), and UPGMA dendrograms consistently showed two distinctive clusters corresponding to habitat type. Chloroplast haplotypes differed between populations in the karst and ultrabasic forests. These results suggest that populations in the karst and ultrabasic forests have undergone a long history of differentiation without migration. The strong habitat-related genetic structure likely reflects ecological isolation and early-stage speciation. We recommend treating the karst and ultrabasic populations as distinct conservation units to preserve the evolutionary potential and adaptive capacity of H. celebica under ongoing environmental change. Full article
(This article belongs to the Section Genetics and Molecular Biology)
28 pages, 3294 KB  
Article
Design, Synthesis, and Bioevaluation of Moxifloxacin Hydrazide Metal Complexes: Integrated Spectroscopic, Computational, Antimicrobial, and Anticancer Investigations
by Abbas Mamdoh Abbas, Sara Reda Fisal, Ibrahim A. I. Ali, Warren Christopher Boyd, Haitham Kalil and Adel Sayed Orabi
Int. J. Mol. Sci. 2026, 27(7), 3057; https://doi.org/10.3390/ijms27073057 - 27 Mar 2026
Abstract
This study reports the synthesis, spectroscopic characterization, and biological evaluation of a novel moxifloxacin hydrazide derivative (MOX-H) and its metal complexes with Co(II), Ni(II), Cu(II), VO(IV), and Gd(III). The ligand was synthesized by hydrazinolysis of moxifloxacin hydrochloride, and the resulting hydrazide was subsequently [...] Read more.
This study reports the synthesis, spectroscopic characterization, and biological evaluation of a novel moxifloxacin hydrazide derivative (MOX-H) and its metal complexes with Co(II), Ni(II), Cu(II), VO(IV), and Gd(III). The ligand was synthesized by hydrazinolysis of moxifloxacin hydrochloride, and the resulting hydrazide was subsequently complexed with the respective metal salts. The interaction between MOX-H and the metal ions yielded the corresponding complexes, formulated as [Co(H2O)Cl(MOX-H)2]Cl·2.5H2O, [Ni(H2O)Cl(MOX-H)2]Cl.4.5H2O, [VO(MOX-H)2]SO4.3.5H2O, [Gd (H2O)(MOX-H)2(NO3)2]NO3.2H2O, and [Cu(MOX-H)2(H2O)Cl]Cl·xH2O (where x = 2, 2.5, 0.5, for products synthesized via template, microwave-assisted, and hydrothermal methods, respectively). The synthesized analogues were characterized by elemental analysis (CHN), FT-IR, UV-visible, and 1H NMR spectroscopy, and mass spectrometry, as well as thermogravimetric (TG/DTG) and magnetic measurements. FT-IR spectra confirmed coordination through the hydrazide carbonyl and amine groups, while UV–visible and magnetic data indicated predominantly octahedral geometries. The thermal behavior exhibited multistep decomposition with activation parameters supporting exothermic processes. When compared to the free ligand, the metal complexes showed increased antimicrobial activity against both Gram-positive and Gram-negative bacteria and fungus species, particularly for the Co(II) and Cu(II) complexes, which showed the largest inhibition zones. The Cu(II)–MOX-H complex exhibited the lowest MIC values (4.88–9.76 µg/mL) among all tested compounds, confirming its outstanding antibacterial potency and high sensitivity compared to the free ligand and standard drug. Cytotoxicity assays demonstrated selective anticancer activity, with the Cu(II)–MOX-H complex showing the highest potency (IC50 ≈ 2.95 µM against MCF-7 and IC50 ≈ 0.98 µM against HepG-2), while maintaining minimal toxicity toward normal cells. These findings were corroborated by molecular docking investigations, which showed that the MOX-H complexes had substantial binding affinities (−9 to −10 kcal/mol) toward DNA topoisomerase II, consistent with their observed biological effects. Full article
(This article belongs to the Section Biochemistry)
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24 pages, 6724 KB  
Article
Physicochemical Characterization, Prebiotic Potential, and Lipid-Lowering Effect of Mesembryanthemum crystallinum L. Polysaccharide
by Hui Cao, Bing Yang, Yangyang Wang, Jingjing Zhang, Huaxing Xiong, Haolin Zhang, Zhanhui Cao, Hui Teng, Lei Chen and Hui Wang
Foods 2026, 15(7), 1153; https://doi.org/10.3390/foods15071153 - 27 Mar 2026
Abstract
Excessive lipid accumulation, a hallmark characteristic of high-fat diet (HFD)-induced obesity, has become a worldwide challenge, necessitating the exploration of secure and efficacious natural products for its intervention. In the present work, a polysaccharide (MCP) was extracted and purified from Mesembryanthemum crystallinum L., [...] Read more.
Excessive lipid accumulation, a hallmark characteristic of high-fat diet (HFD)-induced obesity, has become a worldwide challenge, necessitating the exploration of secure and efficacious natural products for its intervention. In the present work, a polysaccharide (MCP) was extracted and purified from Mesembryanthemum crystallinum L., a novel halophyte, and its physicochemical properties, in vitro fermentation characteristics, lipid-lowering activity, and underlying mechanisms were systematically investigated. Physicochemical analysis revealed that MCP is an acidic polysaccharide, with galacturonic acid as the predominant monosaccharide component, broad molecular weight distribution, and a porous structural morphology. In vitro fermentation experiments demonstrated that MCP could be effectively utilized by human fecal microbiota, significantly promoting the yield of short-chain fatty acids (SCFAs), particularly butyrate at high concentrations, which outperformed inulin. 16S rDNA sequencing uncovered that MCP optimized microbiota composition by enriching SCFA-producing beneficial bacteria (Prevotella_9, Faecalibacterium) while suppressing opportunistic pathogens (Megamonas, Escherichia-Shigella). Metabolomic analysis of fermentation broth revealed that MCP significantly affected microbial glycerophospholipid metabolic pathways. Experiments in Caenorhabditis elegans (C. elegans) confirmed that MCP inhibited HFD-induced lipogenesis, which was linked to the regulation of the nhr-49/sbp-1-mediated lipogenesis pathway. For the first time, using an antibiotic-induced microbiota depletion model in C. elegans, the lipid-lowering effect of MCP was observed to disappear, suggesting a potential role of the gut microbiota in mediating this effect. This investigation establishes a scientific basis for MCP as a novel prebiotic or dietary supplement for managing obesity-related lipid accumulation. Full article
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18 pages, 2263 KB  
Article
Wild Boar (Sus scrofa) as Reservoir of Pathogenic and Intermediate Leptospira
by Alice Stagnoli, Robert Valerio House, Karen Dohmann, Tomke Friederike Prüser, Anne-Catrin Geuthner, Catrin Albrecht and Martin Pfeffer
Animals 2026, 16(7), 1025; https://doi.org/10.3390/ani16071025 - 27 Mar 2026
Viewed by 42
Abstract
Leptospirosis is a globally widespread zoonosis, with wildlife species playing a key role in the maintenance and environmental dissemination of Leptospira spp. Wild boar (Sus scrofa) are increasingly recognized as potential reservoir; however, molecular data on renal carriage of Leptospira spp. [...] Read more.
Leptospirosis is a globally widespread zoonosis, with wildlife species playing a key role in the maintenance and environmental dissemination of Leptospira spp. Wild boar (Sus scrofa) are increasingly recognized as potential reservoir; however, molecular data on renal carriage of Leptospira spp. in Europe and particularly in Germany, remain scarce. In this study, 1281 wild boar kidney samples collected in the federal state of Saxony-Anhalt were analyzed by real-time PCR to investigate the presence of pathogenic and intermediate Leptospira DNA. Pathogenic Leptospira DNA was detected in 3.1% (95% CI = 2.3–4.2) of the samples, whereas intermediate Leptospira DNA was identified in 0.6% (95% CI = 0.3–1.2). Pathogenic Leptospira showed a widespread distribution across the study area, with a significantly higher prevalence in the district of Salzlandkreis (p = 0.04, OR = 3.4, CI = 0.8–10.3). Evaluation of host-related and environmental factors revealed a significant association between pathogenic Leptospira DNA detection and both sub-adult age class (χ2 = 13.1, df = 2, p = 0.0014) and autumn season (χ2 = 12.3, df = 3, p = 0.0066), whereas no significant association was observed for sex. Neither of these factors showed a significant relation with intermediate Leptospira spp. Sequence analyses of rrs and 16S rRNA genes predominantly identified as L. interrogans (62.5%), followed by L. borgpetersenii (20.0%) and L. kirschneri (5.0%). All intermediate Leptospira sequences were identified as L. fainei. Notably, this study provides the first molecular evidence of intermediate L. fainei DNA in wild boar kidneys in Germany. Overall, these findings suggest that wild boar may act as renal carriers of Leptospira spp. and support their potential relevance in the epidemiology of leptospirosis within wildlife populations in Saxony-Anhalt. Full article
(This article belongs to the Section Wildlife)
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16 pages, 2790 KB  
Article
Selection, Isolation, and Characterization of Bacteriophage MA9V-3 from Chryseobacterium indologenes MA9
by Jinmei Chai, Qian Zhou, Yangjian Xiang, He Zou and Yunlin Wei
Viruses 2026, 18(4), 413; https://doi.org/10.3390/v18040413 - 27 Mar 2026
Viewed by 122
Abstract
Chryseobacterium indologenes MA9 is a causative agent of root rot disease in Panax notoginseng (P. notoginseng), with its high incidence being a major manifestation of continuous cropping barriers, severely hindering the sustainable development of the P. notoginseng industry. In this study, a [...] Read more.
Chryseobacterium indologenes MA9 is a causative agent of root rot disease in Panax notoginseng (P. notoginseng), with its high incidence being a major manifestation of continuous cropping barriers, severely hindering the sustainable development of the P. notoginseng industry. In this study, a novel lytic bacteriophage, MA9V-3, was isolated from wastewater, targeting C. indologenes MA9. The phage produced clear plaques, ranging from 1 to 3 mm in diameter, with a surrounding halo. Phage MA9V-3 achieved an adsorption rate of up to 80% after 30 min of contact with C. indologenes MA9, a latent period of approximately 40 min, and an average burst-size if 160 PFU/cell. Transmission electron microscopy revealed that phage MA9V-3 possesses an icosahedral head and a contractile tail, exhibiting a typical myovirus-like morphology. According to the latest ICTV taxonomy, MA9V-3 belongs to the class Caudoviricetes, and the phage’s biocontrol efficacy and inhibitory capacity were evaluated at different multiplicity of infection (MOI s). The results showed that the highest titer recorded at 1.6 × 1010 PFU/mL. Whole-genome sequencing revealed that MA9V-3 is a double-stranded circular DNA virus, with a genome length of 103,203 bp, GC content of 34.29%, and 150 open reading frames (ORFs), one of which is related to tRNA. Only 13 of these ORFs encode known functional sequences, likely due to the limited available gene data for such phages in the database, with additional details on hypothetical proteins yet to be uncovered. Comparative database analysis confirmed that the phage genome contains no antibiotic resistance or toxin-related genes. Phage therapy experiments were performed using MA9V-3 and two other phages screened in our laboratory. The experimental results showed that phage MA9V-3 may be a potential candidate for effectively controlling the infection of Panax notoginseng by C. indologenes MA9, and offering valuable insights into the potential application of phage therapy for managing bacterial plant diseases. Full article
(This article belongs to the Section Bacterial Viruses)
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7 pages, 25033 KB  
Case Report
Left Atrial Myxoma Surgery in Cryoglobulinemic Vasculitis Associated with Hepatitis B: A Clinical Case Report
by Iustina Maria Andrieș, Radu Sebastian Gavril, Cristina Andreea Adam, Grigore Tinica and Florin Mitu
Reports 2026, 9(2), 101; https://doi.org/10.3390/reports9020101 - 27 Mar 2026
Viewed by 68
Abstract
Background and Clinical Significance: Left atrial myxoma is the most common benign primary cardiac tumor and is associated with embolic and hemodynamic complications. Complete surgical excision is the treatment of choice, while postoperative cardiovascular rehabilitation is essential for functional recovery. Case Presentation [...] Read more.
Background and Clinical Significance: Left atrial myxoma is the most common benign primary cardiac tumor and is associated with embolic and hemodynamic complications. Complete surgical excision is the treatment of choice, while postoperative cardiovascular rehabilitation is essential for functional recovery. Case Presentation: We report the case of a 75-year-old woman with arterial hypertension, dyslipidemia, and chronic venous insufficiency (Clinical–Etiological–Anatomical–Pathophysiological (CEAP) class 2), and chronic hepatitis B virus (HBV) infection who underwent surgical excision of a left atrial myxoma and was subsequently admitted three weeks postoperatively for phase II cardiovascular rehabilitation. The postoperative course was complicated by transient atrial fibrillation, peripheral edema, pleural effusion, and progressive purpuric lesions of the lower limbs. Laboratory and immunological evaluation revealed positive cryoglobulins, markedly elevated rheumatoid factor (1058 UI/mL) and IgM levels (715 mg/dL), reduced complement levels (C3, C4), normocytic normochromic anemia, microscopic hematuria, and elevated ALT (156 U/L), AST (142 U/L), total bilirubin (1.4 mg/dL), and INR (1.6), suggestive of hepatic inflammatory activity. HBV status was scheduled for evaluation through Gastroenterology referral (HBV DNA viral load, serological markers: HBsAg, HBeAg, anti-HBe), as our Cardiology Rehabilitation Clinic lacks the possibility of evaluation. After systematic exclusion of alternative etiologies, secondary cryoglobulinemic vasculitis in the context of chronic HBV infection with biochemical evidence of hepatic activity was considered the most plausible diagnosis. Conclusions: This case highlights the complexity of managing elderly patients after cardiac tumor surgery, particularly in the presence of systemic comorbidities. Early recognition of extracardiac complications and an individualized, multidisciplinary strategy are essential to optimize outcomes. Full article
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19 pages, 3277 KB  
Article
Generation of Zucchini Tigre Mosaic Virus Mild Strains for Application in Cross-Protection
by Chung-Hao Huang, Li-Cheng Chuang and Yuh-Kun Chen
Viruses 2026, 18(4), 411; https://doi.org/10.3390/v18040411 - 26 Mar 2026
Viewed by 181
Abstract
Zucchini tigre mosaic virus (ZTMV; Potyvirus pepotigris), which infects wax gourd (Benincasa hispida), was first identified in Taiwan in 2017 and designated ZTMV-TW. In this study, mild strains of ZTMV-TW were generated by modifying the pathogenicity factor HC-Pro to develop [...] Read more.
Zucchini tigre mosaic virus (ZTMV; Potyvirus pepotigris), which infects wax gourd (Benincasa hispida), was first identified in Taiwan in 2017 and designated ZTMV-TW. In this study, mild strains of ZTMV-TW were generated by modifying the pathogenicity factor HC-Pro to develop cross-protection strategies for cucurbit crops. A full-length infectious cDNA clone of ZTMV-TW was cloned in pCAMBIA1304 under the control of the CaMV 35S promoter (ZTMV-TWic). ZTMV-TWic induced typical potyvirus particles, cytoplasmic inclusion bodies, and severe symptoms in wax gourd, pumpkin, and zucchini plants. Conserved motifs of HC-Pro were mutated to generate four single mutants (F7I, R181I, F206L, and D397N) and three double mutants (F7I+F206L, R181I+D397N, and F206L+D397N). Mutants R181I and R181I+D397N caused mild or no symptoms in zucchini, while D397N and F206L+D397N were mild in wax gourd. Cross-protection assays showed that R181I and R181I+D397N provided complete protection against ZTMV-GFP in zucchini, whereas D397N and F206L+D397N conferred high protection in wax gourd. These results demonstrate the feasibility of host-specific mild strain selection for effective ZTMV cross-protection. Full article
(This article belongs to the Special Issue Application of Genetically Engineered Plant Viruses, 2nd Edition)
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22 pages, 3319 KB  
Article
Synthesis, Antibacterial Activity, and Mechanism of C-6 Aminated β-Carboline Derivatives Against MRSA
by Qiuran Wei, Weida Liang, Hongda Qiu, Xing Zhao, Yang Li, Han Ouyang, Bowen Han, Lingling Zhao, Xiao Wang and Hongze Liang
Antibiotics 2026, 15(4), 339; https://doi.org/10.3390/antibiotics15040339 - 26 Mar 2026
Viewed by 104
Abstract
Background: The escalating spread of drug-resistant bacteria is intensifying the antibiotic resistance crisis, necessitating the urgent development of novel antimicrobial agents to address the resulting high global mortality rates and significant socioeconomic burden. Objectives: This study aimed to aminate the C-6 position of [...] Read more.
Background: The escalating spread of drug-resistant bacteria is intensifying the antibiotic resistance crisis, necessitating the urgent development of novel antimicrobial agents to address the resulting high global mortality rates and significant socioeconomic burden. Objectives: This study aimed to aminate the C-6 position of β-carboline and investigate the antibacterial activity and mechanism of action of the derivatives. Results: For the first time, 16 derivatives with various nitrogen-containing moieties, including aliphatic- and phenyl-amino, imidazolium, pyridinium, and quinolinium, were synthesized via amination at the C-6 position of β-carboline. These compounds exhibited moderate to good activity against Gram-positive methicillin-resistant Staphylococcus aureus (MRSA) and Bacillus subtilis, with minimum inhibitory concentration (MIC) values ranging from 1.56 to 100 μg/mL. The study reveals that elongating an alkyl chain, incorporating a cationic scaffold, and expanding a π-delocalized system can enhance antibacterial activity. The most potent derivative from each series was selected for further mechanistic investigation against MRSA. All studied compounds demonstrated low hemolytic activity and low cytotoxicity. Studies on the antibacterial mechanism indicated that the compounds exert their antibacterial effects by disrupting bacterial cell walls and membranes. Additionally, two of the compounds were found to potentially disrupt the secondary structure of DNA. All tested compounds exhibited antibiofilm activity. Conclusions: Our findings demonstrate that amination modification at the C-6 position of β-carboline can enhance antibacterial activity by disrupting the cell wall membranes and interacting with bacterial DNA. These results provide a basis for further optimization of antibacterial agents based on β-carboline. Full article
(This article belongs to the Section Novel Antimicrobial Agents)
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16 pages, 7499 KB  
Article
Characterization of the Soybean GmCCS-GmCSN5B-GmVTC1 Pathway and Its Functional Roles Under Soybean mosaic virus Infection
by Bowen Li, Tao Wang, Mengzhuo Liu, Liqun Wang, Hui Liu, Tongtong Jin, Ting Hu, Kai Li and Haijian Zhi
Plants 2026, 15(7), 1020; https://doi.org/10.3390/plants15071020 - 26 Mar 2026
Viewed by 185
Abstract
Soybean mosaic virus (SMV) is a major constraint on global soybean (Glycine max (L.) Merr.) production, causing substantial economic losses worldwide. Despite these losses, the potential of resistance genes as a solution remains largely unexplored. In this study, the COPPER CHAPERONE FOR [...] Read more.
Soybean mosaic virus (SMV) is a major constraint on global soybean (Glycine max (L.) Merr.) production, causing substantial economic losses worldwide. Despite these losses, the potential of resistance genes as a solution remains largely unexplored. In this study, the COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE (GmCCS) was initially employed as a bait to screen the soybean cDNA library, leading to the identification of a protein homologous to Arabidopsis thaliana COP9 signalosome complex subunit 5B (AtCSN5B), designated as GmCSN5B. Quantitative real-time PCR (qRT-PCR) analysis revealed differential expression of GmCSN5B in the SMV-resistant (Qihuang No.1, QH) and susceptible (Nannong 1138-2, NN) variety following SMV-SC3 strain inoculation. Knockdown of GmCSN5B via Bean pod mottle virus (BPMV)-induced gene silencing (VIGS) significantly enhanced SMV resistance compared to control plants. This work further demonstrated that GmCSN5B can interact with the downstream GmVTC1 protein, which was potentially associated with ascorbic acid (AsA; Vitamin C) synthesis. Moreover, GmVTC1 also responded to SMV infection, and its knockdown led to a reduction in endogenous AsA levels within the host, thereby compromising the plant’s resistance to SMV. Together, these findings suggest that the GmCCS-GmCSN5B-GmVTC1 pathway in soybean modulates host resistance to SMV through the regulation of AsA synthesis. Full article
(This article belongs to the Topic Plant Breeding, Genetics and Genomics, 2nd Edition)
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18 pages, 2483 KB  
Article
Probiotic Lactic Acid Bacteria-Fermented Beverages from Bambara Groundnut and Cowpea Sprouts Modulate Gut Microbiota and Short-Chain Fatty Acids
by Nobahle Pretty Cele, Yusuf Olamide Kewuyemi, Oladipupo Adiamo, Eshetu Mulisa Bobasa, Jiale Zhang, Maral Seididamyeh, Yasmina F. Sultanbawa and Dharini Sivakumar
Foods 2026, 15(7), 1141; https://doi.org/10.3390/foods15071141 - 26 Mar 2026
Viewed by 196
Abstract
Underutilised, nutrient-dense legumes in their sprouted form provide promising substrates for developing functional fermented foods capable of influencing gut microbial activity and metabolite production. This study evaluated the effects of probiotic lactic acid bacteria-fermented beverages derived from sprouted Bambara groundnut (Vigna subterranea [...] Read more.
Underutilised, nutrient-dense legumes in their sprouted form provide promising substrates for developing functional fermented foods capable of influencing gut microbial activity and metabolite production. This study evaluated the effects of probiotic lactic acid bacteria-fermented beverages derived from sprouted Bambara groundnut (Vigna subterranea) and cowpea (Vigna unguiculata) on gut microbiota composition and short-chain fatty acid (SCFA) production using an in vitro colonic fermentation model. The beverages were fermented with either Bifidobacterium animalis BB-12 (BCBF24) or Lactiplantibacillus plantarum 75 (BCL7524). During colonic fermentation, at 0, 12, 24, and 38 h, faecal slurries were collected for SCFA analysis using gas chromatography–mass spectrometry (GC-MS) and deoxyribonucleic acid (DNA) sequencing (Oxford Nanopore Technologies). Microbial diversity decreased, indicating selective enrichment of taxa. BCL7524 induced a major shift, significantly (p < 0.05) enriching Bacillota and driving Megasphaera to ~42% dominance within 24 h. This reflected cross-feeding from L. plantarum to lactate-utilising Megasphaera spp. Spearman correlation linked Megasphaera to a broad SCFA profile, including isobutyric, isovaleric, valeric, and hexanoic acids, with a significant (p < 0.05) positive correlation observed for hexanoic acid. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated proteolysis and mapped hexanoic acid to fatty acid biosynthesis pathways, suggesting chain-elongation activity contributing to hexanoate formation. In line with this, BCL7524 produced significantly (p < 0.05) higher levels of hexanoate (3–14 mM) and valerate (10–15 mM), supporting chain-elongation activity within the community. In contrast, BCBF24 enriched Actinomycetota and Bifidobacterium, correlating with acetate production (18–23 mM). This study demonstrates that specific synbiotic beverages can modulate gut microbial ecology and metabolic output under in vitro conditions. Full article
(This article belongs to the Special Issue Functional Foods, Gut Microbiota, and Health Benefits)
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17 pages, 6548 KB  
Article
Bixafen Induces Programmed Cell Death in Rhizoctonia solani by Damaging Mitochondrial Integrity
by Yuanhang Ren, Ping Huang, Wentao Gu, Ruyi Li, Yongtian Zhao and Lidan Lu
J. Fungi 2026, 12(4), 238; https://doi.org/10.3390/jof12040238 - 26 Mar 2026
Viewed by 214
Abstract
Rice sheath blight caused by Rhizoctonia solani is one of the most destructive diseases of rice. Bixafen has been proposed as a promising control agent with moderate resistance risk; however, its cellular mode of action remains unclear. Therefore, this study investigated the antifungal [...] Read more.
Rice sheath blight caused by Rhizoctonia solani is one of the most destructive diseases of rice. Bixafen has been proposed as a promising control agent with moderate resistance risk; however, its cellular mode of action remains unclear. Therefore, this study investigated the antifungal mechanism of bixafen from the perspective of programmed cell death (PCD). Bioassays showed that bixafen strongly inhibited R. solani, with a median effective concentration (EC50) of 1.16 μg/mL. Morphologically, bixafen induced hyphae collapse, vacuolization, chromatin aggregation, and mitochondrial disruption. Transcriptome analysis further revealed that bixafen significantly altered the expression of genes involved in the tricarboxylic acid cycle and PCD pathways. In addition, bixafen, at the concentration of EC50, triggered ROS accumulation accompanied by increased malondialdehyde (MDA) levels. These oxidative effects led to mitochondrial damage, characterized by loss of membrane potential, reduced Tomm20 expression, and decreased Aco-2 activity. Subsequently, bixafen activated apoptosis, as evidenced by induction of the mitochondria-associated inducer of death (AMID), down-regulation of Bcl-2, and DNA fragmentation. Moreover, bixafen also induced autophagy by reducing p62 and increasing Beclin-1 expression, which suggests the clearance of damaged mitochondria. Collectively, these results demonstrated that bixafen induced mitochondrial-dependent apoptosis and autophagy in R. solani, which provided novel insights into its cellular antifungal mechanism and supported its potential as a PCD-targeted fungicide. Full article
(This article belongs to the Section Fungal Pathogenesis and Disease Control)
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27 pages, 18718 KB  
Article
Molecular Phylogeny of the Genus Cymbosellaphora (Bacillariophyceae, Cymbellales): Evolutionary Significance of Areolae Morphology vs. Structure of Pore Occlusions
by Andrei Mironov, Anton Glushchenko, Natalia Tseplik, Yevhen Maltsev, Sergei Genkal and Maxim Kulikovskiy
Phycology 2026, 6(2), 34; https://doi.org/10.3390/phycology6020034 - 25 Mar 2026
Viewed by 113
Abstract
This is an investigation of molecular phylogeny and morphology of the genus Cymbosellaphora (Bacillariophyceae, Cymbellales). For this study, a strain of Cymbosellaphora geisslerae isolated from the Plotnikova River (Kamchatka Territory, Russia) was studied using light, scanning, and transmission electron microscopy, as well as [...] Read more.
This is an investigation of molecular phylogeny and morphology of the genus Cymbosellaphora (Bacillariophyceae, Cymbellales). For this study, a strain of Cymbosellaphora geisslerae isolated from the Plotnikova River (Kamchatka Territory, Russia) was studied using light, scanning, and transmission electron microscopy, as well as molecular methods. Phylogenetic analysis based on 18S rDNA and rbcL gene sequences revealed that Cymbosellaphora geisslerae belongs to the order Cymbellales and forms an alliance with representatives of genera Gomphonella and Reimeria. The results of molecular study are supported by morphology. In the course of molecular analysis, we discuss the diversity of valve morphology across Cymbosellaphora, Gomphonella, Reimeria and related genera. As a result, a new type of pore occlusions, typical for Cymbosellaphora, is proposed, the diagnoses of the genus Cymbosellaphora and the species Cymbosellaphora geisslerae are emended, and the epitypification of this species is made. Most importantly, our data indicates that the concepts of areolae morphology and pore occlusions structure in the order Cymbellales might require critical evaluation. Full article
27 pages, 3773 KB  
Article
Multiepitope-Based Peptide Vaccine Against A35R Glycoprotein and E8L Membrane Protein of Monkeypox Virus Using an Immunoinformatics Approach
by Laaiba Attique, Syed Babar Jamal, Tayyaba Gulistan, Adnan Haider, Deeba Amraiz, Sumra Wajid Abbasi, Sajjad Ahmad and Mohammad Abdullah Aljasir
Biology 2026, 15(7), 524; https://doi.org/10.3390/biology15070524 - 25 Mar 2026
Viewed by 216
Abstract
Monkeypox virus, a zoonotic DNA virus belonging to the Orthopoxvirus genus, has emerged as a global health issue because of its fast spread to 104 nations over six continents. In the current study, an immunoinformatics pipeline was used to design a multiepitope-based prophylactic [...] Read more.
Monkeypox virus, a zoonotic DNA virus belonging to the Orthopoxvirus genus, has emerged as a global health issue because of its fast spread to 104 nations over six continents. In the current study, an immunoinformatics pipeline was used to design a multiepitope-based prophylactic vaccine targeting the A35R glycoprotein and E8L membrane proteins of the monkeypox virus. Selected target proteins were surface-exposed, non-homologous to the human proteome, and essential for viral pathogenesis. B-cell and T-cell (MHC-I and MHC-II) epitopes with high antigenicity (>0.5), non-allergenicity, non-toxicity, and highly soluble in water with strong affinity towards innate and adaptive receptors, were prioritized. Shortlisted epitopes were combined to design the final vaccine utilizing an adjuvant (50S ribosomal L7/L12) and appropriate linkers for improved immunogenicity. Population coverage analysis showed wide HLA representation with 83.57% (MHC-I) and 88.8% (MHC-II) global coverage, including 89.6% for West Africa and 87.3% for Central Africa. Docking analysis of the vaccine construct with the TLR-4 receptor revealed stable interactions (−695.6 kcal/mol). Molecular dynamics simulations and binding free energies further confirmed structural stability. Immune simulations predicted strong activation of both humoral and cellular immune responses. These results indicate that the designed multiepitope vaccine construct is a viable option for additional experimental validation against the monkeypox virus. Full article
(This article belongs to the Special Issue Feature Papers in Immunology)
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15 pages, 1285 KB  
Case Report
Longitudinal Whole-Exome Sequencing of Cell-Free DNA Reveals Molecular Evolution and Heterogeneous Clinical Outcomes in PD-L1 Stratified Advanced NSCLC Adenocarcinoma Patients Treated with Atezolizumab
by Viola Bianca Serio, Tommaso Regoli, Debora Maffeo, Ignazio Martellucci, Diletta Rosati, Marco Ghisalberti, Alberto Balistreri, Gianluca Santamaria, Niccolò Vono, Francesca Mari, Francesca Colombo, Elisa Frullanti and Maria Palmieri
Int. J. Mol. Sci. 2026, 27(7), 2947; https://doi.org/10.3390/ijms27072947 (registering DOI) - 24 Mar 2026
Viewed by 202
Abstract
Programmed death-ligand 1 (PD-L1) expression is routinely used to guide immune checkpoint inhibitor (ICI) therapy in advanced non-small cell lung cancer (NSCLC), yet clinical benefit remains heterogeneous even among PD-L1–high tumors. Liquid biopsy based on cell-free DNA (cfDNA) enables minimally invasive, real-time monitoring [...] Read more.
Programmed death-ligand 1 (PD-L1) expression is routinely used to guide immune checkpoint inhibitor (ICI) therapy in advanced non-small cell lung cancer (NSCLC), yet clinical benefit remains heterogeneous even among PD-L1–high tumors. Liquid biopsy based on cell-free DNA (cfDNA) enables minimally invasive, real-time monitoring of tumor evolution. We report four cases of metastatic lung adenocarcinoma treated with atezolizumab, integrating longitudinal whole-exome sequencing (WES) of cfDNA with radiological assessment. Four patients with PD-L1–positive (≥60%) metastatic NSCLC received atezolizumab monotherapy. Serial cfDNA samples (1–3 per patient) were analyzed by high-depth WES. Distinct molecular trajectories paralleled divergent clinical outcomes. One patient achieved a complete molecular response, characterized by progressive clearance of KRAS, ATM, and NF1 mutant clones, which was concordant with radiological remission. A second patient showed an initial molecular response, followed by clonal rebound of TP53, NF1, and NOTCH2 mutant populations and the emergence of PTEN and KIF1A variants, suggesting clinical progression. Two patients exhibited primary resistance despite high PD-L1 expression, with persistent or expanding clones and early subclonal diversification; in one case, new EGFR and BRAF alterations emerged under treatment pressure. Notably, switching to platinum-based chemotherapy in a non-responder induced a measurable molecular response, highlighting discordance between PD-L1 status and immunotherapy efficacy. Longitudinal cfDNA WES captured dynamic clonal remodeling under immunotherapy and anticipated radiological outcomes. These findings underscore the clinical necessity of integrating dynamic molecular monitoring by liquid biopsy to overcome the limitations of static PD-L1 assessment, refine therapeutic stratification, and identify early resistance mechanisms in advanced NSCLC. Full article
(This article belongs to the Special Issue New Advances in Cancer Genomics)
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