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Keywords = GC compound identification

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25 pages, 1241 KB  
Article
Unlocking the Secrets of Roman Chamomile (Anthemis nobilis L.) Essential Oil: Structural Elucidation and Acute Toxicity of New Esters
by Niko S. Radulović and Marko Z. Mladenović
Molecules 2026, 31(2), 256; https://doi.org/10.3390/molecules31020256 - 12 Jan 2026
Abstract
To address gaps in the characterization of Roman chamomile (Anthemis nobilis L., Asteraceae)—an ethnobotanically and commercially important species—we profiled its essential oil (EO), focusing on esters that are incompletely characterized or unreported. Comprehensive GC-MS of two commercial EOs and their chromatographic fractions, [...] Read more.
To address gaps in the characterization of Roman chamomile (Anthemis nobilis L., Asteraceae)—an ethnobotanically and commercially important species—we profiled its essential oil (EO), focusing on esters that are incompletely characterized or unreported. Comprehensive GC-MS of two commercial EOs and their chromatographic fractions, combined with synthesis and co-injection of reference compounds, enabled the identification of 190 constituents. We uncovered a homologous series of angelates, tiglates, and senecioates by partial-ion-current (PIC) screening (m/z 55, 83, 100, 101), augmented by co-injection and NMR confirmation. Among these EO constituents, four esters, methallyl 3-methylbutanoate (6h), methallyl senecioate (3h), 3-methylpentyl 2-methylbutanoate (5c), and 5-methylhexyl angelate (2g) are reported here as new natural products and previously unreported compounds in the literature. Selected methacrylates and related α,β-unsaturated esters underwent model Michael additions to methanethiol (generated in situ from dimethyl disulfide and NaBH4), confirming their thiol-acceptor reactivity. In an Artemia salina assay, the EO and most esters were non-toxic; methacrylates showed only low toxicity at the highest concentrations. These results refine the chemical map of A. nobilis EO and highlight specific ester families for future mechanistic and biological evaluation. Full article
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27 pages, 11357 KB  
Article
An Advanced Multi-Analytical Approach to Study Baroque Painted Wood Sculptures from Apulia (Southern Italy)
by Daniela Fico, Giorgia Di Fusco, Maurizio Masieri, Raffaele Casciaro, Daniela Rizzo and Angela Calia
Materials 2026, 19(2), 284; https://doi.org/10.3390/ma19020284 - 9 Jan 2026
Viewed by 182
Abstract
Three painted valuable wood sculptures from conventual collections in Apulia (Southern Italy), made between the beginning of the 17th century and the first half of the 18th century, were studied to shed light on the pictorial materials and techniques of the Neapolitan Baroque [...] Read more.
Three painted valuable wood sculptures from conventual collections in Apulia (Southern Italy), made between the beginning of the 17th century and the first half of the 18th century, were studied to shed light on the pictorial materials and techniques of the Neapolitan Baroque sculpture in Southern Italy. A multi-analytical approach was implemented using integrated micro-invasive techniques, including polarized light microscopy (PLM) in ultraviolet (UV) and visible (VIS) light, scanning electron microscopy coupled with energy dispersive spectroscopy (SEM-EDS), Fourier-Transform Infrared (FTIR) spectroscopy, and pyrolysis–gas chromatography/high-resolution mass spectrometry (Py-GC/HRMS). The stratigraphic sequences were microscopically identified, and the pictorial layers were discriminated on the basis of optical features, elemental compositions, and mapping. Organic components were detected by FTIR as lipids and proteinaceous compounds for binders, while terpenic resins were detected as varnishes. Accordingly, PY-GC/HRMS identified siccative oils, animal glue, egg, and colophony. The results allowed the identification of the painting techniques used for the pictorial films and the ground preparation layers and supported the distinction between original and repainting layers. The results of this multi-analytical approach provide insights into Baroque wooden sculpture in Southern Italy and offers information to support restorers in conservation works. Full article
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16 pages, 968 KB  
Article
Odor-Active Compound Stability in Mango Peel Side-Streams: Insights for Valorization and Waste Minimization
by Rodrigo Oliver-Simancas, María Consuelo Díaz-Maroto, Álvaro Fernández-Ochoa, María Soledad Pérez-Coello and María Elena Alañón
Foods 2026, 15(2), 215; https://doi.org/10.3390/foods15020215 - 8 Jan 2026
Viewed by 131
Abstract
Comprehensive characterization of the mango peel volatilome is essential to revealing its aromatic potential and enabling its revalorization as a natural flavoring. The volatile profile of Mangifera indica L. var. Osteen peels at three ripening stages (green, ripe, overripe) was analyzed before and [...] Read more.
Comprehensive characterization of the mango peel volatilome is essential to revealing its aromatic potential and enabling its revalorization as a natural flavoring. The volatile profile of Mangifera indica L. var. Osteen peels at three ripening stages (green, ripe, overripe) was analyzed before and after thermal drying (45 °C, 18 h): an unavoidable stabilization step for valorization applications. HS–SPME/GC–MS enabled the identification of 76 volatile compounds across different key aroma-contributing families: monoterpenes, sesquiterpenes, alcohols, aldehydes, ketones, esters, furanics and norisoprenoids. The ripening stage significantly influenced the qualitative and quantitative volatilome in fresh samples but drying heavily reduced those differences. Multivariate analyses confirmed that the drying process is the dominant factor shaping the stabilized peels’ volatilome. These findings underscore the industrial relevance of this side-stream: regardless of ripening stage, mango peels can be uniformly stabilized to be upcycled into aroma-rich ingredients. It simplifies raw material sourcing and supports food waste revalorization strategies in flavor and fragrance developments. Full article
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22 pages, 2368 KB  
Article
Characterization of Volatile Compounds in Amarillo, Ariana, Cascade, Centennial, and El Dorado Hops Using HS-SPME/GC-MS
by Marcos Edgar Herkenhoff, Oliver Brödel, Guilherme Dilarri, Miklos Maximiliano Bajay, Marcus Frohme and Carlos André da Veiga Lima Rosa Costamilan
Compounds 2026, 6(1), 4; https://doi.org/10.3390/compounds6010004 - 4 Jan 2026
Viewed by 167
Abstract
Humulus lupulus L. (hops) is essential in brewing due to its contributions to bitterness, flavor, and aroma. This study compared the volatile profiles of five commercially important hop varieties—Amarillo, Ariana, Cascade, Centennial, and El Dorado—grown in their main regions of origin (United States [...] Read more.
Humulus lupulus L. (hops) is essential in brewing due to its contributions to bitterness, flavor, and aroma. This study compared the volatile profiles of five commercially important hop varieties—Amarillo, Ariana, Cascade, Centennial, and El Dorado—grown in their main regions of origin (United States for Amarillo, Cascade, and El Dorado; Germany for Ariana; and Brazil for Centennial). Headspace solid-phase microextraction coupled with gas chromatography–mass spectrometry (HS-SPME/GC-MS) enabled the identification of 312 volatile compounds, including monoterpenes (e.g., myrcene, linalool, geraniol), sesquiterpenes (e.g., humulene, caryophyllene), esters, alcohols, aldehydes, and ketones. Amarillo showed the highest myrcene content (22.61% of the total volatile area), while Centennial was distinguished by elevated γ-muurolene (20.59%), and El Dorado by the highest level of undecan-2-one (10.47%), highlighting marked varietal differences in key aroma-active constituents. Multivariate, including principal component analysis (PCA) and partial least squares discriminant analysis (PLS-DA), clearly discriminated the five varieties: PC1 (41.04% of the variance) separated samples enriched in fruity/floral monoterpenes and esters from those dominated by woody/resinous sesquiterpenes, whereas PC2 (25.93% of the variance) reflected variation in medium-chain esters, ketones, and waxy compounds. These chemometric patterns demonstrate that both genetic background and growing region terroir strongly shape hop volatile composition and, consequently, aroma potential, providing brewers with objective criteria for selecting hop varieties to achieve specific sensory profiles in beer. Full article
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28 pages, 4873 KB  
Article
MOX Sensors for Authenticity Assessment and Adulteration Detection in Extra Virgin Olive Oil (EVOO)
by Elisabetta Poeta, Estefanía Núñez-Carmona, Veronica Sberveglieri, Alejandro Bernal, Jesús Lozano and Ramiro Sánchez
Sensors 2026, 26(1), 275; https://doi.org/10.3390/s26010275 - 1 Jan 2026
Viewed by 304
Abstract
Food fraud, particularly in the olive oil sector, represents a pressing concern within the agri-food industry, with implications for consumer trust and product authenticity. Certified products like Protected Designation of Origin (PDO) Extra Virgin Olive Oil (EVOO) are premium products that undergo strict [...] Read more.
Food fraud, particularly in the olive oil sector, represents a pressing concern within the agri-food industry, with implications for consumer trust and product authenticity. Certified products like Protected Designation of Origin (PDO) Extra Virgin Olive Oil (EVOO) are premium products that undergo strict quality controls, must comply with specific production regulations, and generally have a higher market price. These characteristics make them particularly vulnerable to economically motivated adulteration. In this study, the adulteration of PDO EVOO with Olive Pomace Oil (POO) and Olive Oil (OO) was investigated through a combined analytical approach. A traditional technique, gas chromatography–mass spectrometry (GC-MS) combined with solid-phase microextraction (SPME), was employed alongside an innovative method based on an electronic nose equipped with metal oxide semiconductor (MOX) sensors. GC-MS analysis enabled the identification of characteristic volatile compounds, providing a detailed chemical fingerprint of the different oil samples. Concurrently, the MOX sensor array successfully detected variations in the volatile profiles released by the adulterated oils, demonstrating its potential as a rapid and cost-effective screening tool. The complementary use of both techniques highlighted the reliability of MOX sensors in differentiating authentic PDO EVOO from adulterated samples and underscored their applicability in routine quality control and fraud prevention strategies. Full article
(This article belongs to the Special Issue Electrochemical Sensors in the Food Industry: 2nd Edition)
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14 pages, 540 KB  
Article
Chemical Composition, Antioxidant Potential, and Acetylcholinesterase Inhibitory Activity of the Essential Oil from Croton alnifolius Lam.
by Claudia Cruz, Pablo Muñoz, Nixon Cumbicus, Vladimir Morocho and Omar Malagón
Molecules 2026, 31(1), 61; https://doi.org/10.3390/molecules31010061 - 24 Dec 2025
Viewed by 243
Abstract
This study reports the first chemical characterization of the essential oil of Croton alnifolius. A very low yield of 0.028% ± 0.0012 (w/w) was obtained by steam distillation for 4 h using a Clevenger-type apparatus. The chemical composition [...] Read more.
This study reports the first chemical characterization of the essential oil of Croton alnifolius. A very low yield of 0.028% ± 0.0012 (w/w) was obtained by steam distillation for 4 h using a Clevenger-type apparatus. The chemical composition of the oil was analyzed by gas chromatography coupled with mass spectrometry (GC–MS) for compound identification and by gas chromatography with a flame ionization detector (GC–FID) for quantification. A total of 49 compounds were identified, representing 94.65% of the total oil composition. The chemical profile was dominated by hydrocarbon sesquiterpenes (53.11%) and hydrocarbon monoterpenes (32.20%). The major constituents included (E)-caryophyllene (17.42%), α-pinene (14.53%), myrcene (9.51%), germacrene D (9.92%), and β-chamigrene (5.48%). The biological activity of the essential oil was also evaluated: it exhibited weak antimicrobial activity against Enterococcus faecium with a Minimum Inhibitory Concentration (MIC) value of 1000 μg/mL, strong antioxidant potential in the ABTS assay (SC50 = 28.43 ± 1.0 μg/mL), and moderate acetylcholinesterase inhibitory activity (61.74 ± 1.02 μg/mL). These results indicate that the unique sesquiterpene rich chemical profile of C. alnifolius contributes to its antioxidant and neuroprotective potential, supporting its relevance as a promising source of bioactive natural products. Full article
(This article belongs to the Special Issue Biological Activity of Essential Oils, 2nd Edition)
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27 pages, 3810 KB  
Article
Process-Modulated Flavor Formation and Establishment of Predictive Modeling for Aroma in Spicy Anchovies
by Zishan Liao, Qian Liu, Wenli Kang, Tao Feng, Zemin Ding, Shixian Yin and Shiqing Song
Molecules 2026, 31(1), 57; https://doi.org/10.3390/molecules31010057 - 23 Dec 2025
Viewed by 334
Abstract
Research on spicy anchovies lacks dedicated sensory frameworks, reliable aroma identification, and systematic processing–flavor insights. In this study, 21 spicy anchovy samples with different processing parameters were selected as research objects. The effects of process modifications on the sensory attributes and aroma composition [...] Read more.
Research on spicy anchovies lacks dedicated sensory frameworks, reliable aroma identification, and systematic processing–flavor insights. In this study, 21 spicy anchovy samples with different processing parameters were selected as research objects. The effects of process modifications on the sensory attributes and aroma composition of spicy anchovies were investigated through sensory evaluation and aroma analysis. A product-specific flavor wheel (5 modalities, 136 terms) with 17 key descriptors was built via Quantitative Descriptive Analysis. GC-O combined with AEDA/AECA identified 13 key aroma compounds in the commercial sample. HS-SPME-GC-MS detected 73 volatiles across all samples, among which olefins (34 species) were dominant and their formation was linked to lipid oxidation and high-temperature processing. Odor activity values and sensory data revealed that a frying temperature of 180 °C promoted nonanal and (E)-β-ocimene to enhance “fried seafood aroma”; Xiaomila chili pepper boosted “initial spiciness” via capsaicin; and high Sichuan pepper masked “fishy off-flavor” via linalyl acetate. A prediction model for aroma sensory attributes was established and the prediction correlations for “braised beef in soy sauce aroma” and “fried seafood aroma” were relatively high (r = 0.90 and 0.96, respectively). This study provides theoretical guidance for the flavor improvement of spicy anchovies. Full article
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19 pages, 4844 KB  
Article
Comparison of Flavor Characteristics and Metabolite Basis of Oolong Tea from Six Different Tea Plant Cultivars Under High- and Low-Altitude Conditions
by Yuting Li, Shuaibo Shao, Siwei Deng, Zhendong Zhang, Yu Pan, Xingyuan Yao, Chengzhe Zhou, Zhong Wang and Yuqiong Guo
Plants 2026, 15(1), 23; https://doi.org/10.3390/plants15010023 - 21 Dec 2025
Viewed by 459
Abstract
Oolong tea presents notable variations in taste profile and aroma characteristics under different cultivation conditions, particularly across altitudes. However, systematic investigations into the altitude-induced differences in key taste compounds and aroma composition remain limited. In this study, we examined six oolong tea cultivars, [...] Read more.
Oolong tea presents notable variations in taste profile and aroma characteristics under different cultivation conditions, particularly across altitudes. However, systematic investigations into the altitude-induced differences in key taste compounds and aroma composition remain limited. In this study, we examined six oolong tea cultivars, comparing their taste-related chemical constituents and aroma profiles under high- and low-altitude cultivation. Sensory evaluation, high-performance liquid chromatography (HPLC) and headspace solid-phase microextraction-gas chromatography-mass spectrometry (HS-SPME-GC-MS) were employed to characterize these differences. Sensory evaluation revealed that high-altitude oolong teas exhibited enhanced umami, sweetness, and floral intensity. In most cultivars, the levels of free amino acids, polyphenols, and soluble sugar were relatively higher under high-altitude conditions. HS-SPME-GC-MS identified 55 common volatile organic compounds (VOCs), with terpenes and esters comprising the largest number of compounds. Identification by partial least squares discriminant analysis (PLS-DA) combined with relative odor activity value (rOAV) screening yielded 22 candidate differential volatile organic compounds. Floral monoterpenes, including linalool, linalool oxide II and geraniol, were consistently higher in high-altitude teas, whereas most other volatiles varied primarily with cultivar rather than altitude. These chemical patterns are consistent with the sensory finding of stronger floral intensity in high-altitude samples. This study provides theoretical insights for cultivar selection and quality improvement of oolong tea grown in high-altitude regions. Full article
(This article belongs to the Section Phytochemistry)
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15 pages, 770 KB  
Article
Exploring the Volatile Fingerprinting of Young Portuguese Monovarietal Red Wines by HS-SPME-GC×GC-TOFMS: A Five-Year Study
by Sousa Gastão-Muchecha, Nuno Martins, Raquel Garcia and Maria João Cabrita
Molecules 2025, 30(24), 4814; https://doi.org/10.3390/molecules30244814 - 18 Dec 2025
Viewed by 455
Abstract
The aroma of wine is a defining quality attribute, determined mainly by volatile organic compounds (VOCs) originating from grape metabolism, fermentation, and maturation. This study aimed to characterize the VOC composition of young monovarietal red wines from the Alentejo region (Portugal), produced from [...] Read more.
The aroma of wine is a defining quality attribute, determined mainly by volatile organic compounds (VOCs) originating from grape metabolism, fermentation, and maturation. This study aimed to characterize the VOC composition of young monovarietal red wines from the Alentejo region (Portugal), produced from Alicante Bouschet, Touriga Nacional, and Trincadeira across five consecutive vintages (2020–2024). Headspace solid-phase microextraction (HS-SPME) coupled with comprehensive two-dimensional gas chromatography–time-of-flight mass spectrometry (GC×GC-ToFMS) was applied for VOC profiling, followed by multivariate statistical analyses. A strict identification and reproducibility criterion was applied to ensure longitudinal consistency over the five vintages. MANOVA analysis revealed significant effects (p < 0.001) of both grape variety and vintage on VOC distribution. Esters were the most abundant and discriminant group, while aldehydes and terpenes contributed markedly to varietal differentiation. Alicante Bouschet wines were associated with fruity ethyl esters, Touriga Nacional with monoterpenes (citronellol, terpinolene, α-farnesene) and aromatic alcohols, and Trincadeira with aldehydes and sesquiterpenes. Canonical discriminant analysis (CDA) achieved clear separation among varieties and vintages, with the first two canonical functions accounting for over 70% of the total variance. Heatmap analysis highlighted distinctive terpene and C13-norisoprenoid profiles across samples. These findings demonstrate the pivotal role of VOCs in defining Alentejo wine typicity and support their use as chemical markers for authenticity and PDO valorization. Full article
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26 pages, 1401 KB  
Article
Synthesis of Small Libraries of Natural Products—Part III: Identification of New Esters from Pelargonium graveolens L’Her. (Geraniaceae) Essential Oil
by Šejla F. Gusinac Avdović, Marko Z. Mladenović and Niko S. Radulović
Molecules 2025, 30(24), 4741; https://doi.org/10.3390/molecules30244741 - 11 Dec 2025
Viewed by 389
Abstract
Pelargonium graveolens (rose geranium) essential oil contains numerous aroma-active esters that are challenging to identify at low abundance. We obtained by preparative chromatography an ester-rich fraction of the essential oil and constructed a synthetic reference library of 159 structurally related esters (spectral/GC data [...] Read more.
Pelargonium graveolens (rose geranium) essential oil contains numerous aroma-active esters that are challenging to identify at low abundance. We obtained by preparative chromatography an ester-rich fraction of the essential oil and constructed a synthetic reference library of 159 structurally related esters (spectral/GC data provided; 102 newly synthesized). This enabled dereplication and detection of constituents not apparent in direct GC–MS of the unfractionated oil. Nine esters (5-methylhexyl formate, (Z)-hex-3-en-1-yl 3-methylpentanoate, 3-methylbutyl 3-methylpentanoate, 3-methylpentyl 4-methylpentanoate, 5-methylhexyl hexanoate, 3-methylbutyl 6-methylheptanoate, 2-phenylethyl 6-methylheptanoate, 5-methylhexyl tiglate, and 6-methylheptyl tiglate) were confirmed as new natural products (eight of them new compounds overall), by combined evidence from retention indices, EI mass spectra, co-injections with synthesized references, and, in selected cases, by 1D/2D NMR. Systematic RI trends across acid and alcohol isomers were delineated, aiding rapid differentiation of regio-isomeric esters that share similar EI patterns. This library-guided workflow offers a robust path to differentiate structurally close volatiles in complex matrices and provides transferable RI/spectral benchmarks for future natural product identification. Full article
(This article belongs to the Section Natural Products Chemistry)
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52 pages, 1966 KB  
Review
Emerging Novel Psychoactive Substances (2020–2025): GC-MS Approaches for Separation, Detection, and Characterization
by Dušan Dimić
Chemosensors 2025, 13(12), 426; https://doi.org/10.3390/chemosensors13120426 - 9 Dec 2025
Viewed by 2154
Abstract
The rapid emergence of novel psychoactive substances (NPSs) after 2020 has created one of the most dynamic analytical challenges in modern forensic science. Hundreds of new synthetic cannabinoids, synthetic cathinones, synthetic opioids, hallucinogens, and dissociatives, appearing as hybrid or structurally modified analogues of [...] Read more.
The rapid emergence of novel psychoactive substances (NPSs) after 2020 has created one of the most dynamic analytical challenges in modern forensic science. Hundreds of new synthetic cannabinoids, synthetic cathinones, synthetic opioids, hallucinogens, and dissociatives, appearing as hybrid or structurally modified analogues of conventional drugs, have entered the illicit market, frequently found in complex polydrug mixtures. This review summarizes recent advances in gas chromatography-mass spectrometry (GC-MS) for their detection, structural elucidation, and differentiation between 2020 and 2025 based on the ScienceDirect and Google Scholar databases. Due to its reproducible electron-ionization spectra, established reference libraries, and robustness toward complex matrices, GC-MS remains the primary tool for the separation and identification of emerging NPS. The current literature highlights significant improvements in extraction and pre-concentration procedures, derivatization strategies for thermally unstable analogues, and chromatographic optimization that enable discrimination between positional and stereoisomers. This review covers a wide range of matrices, including powders, herbal materials, vaping liquids, and infused papers, as well as biological specimens such as blood, urine, and hair. Chemometric interpretation of GC-MS data now supports automated classification and prediction of fragmentation pathways, while coupling with complementary spectroscopic techniques strengthens compound confirmation. The review emphasizes how continuous innovation in GC-MS methodology has paralleled the rapid evolution of the NPS landscape, ensuring its enduring role as a reliable, adaptable, and cost-effective platform for monitoring emerging psychoactive substances in seized materials. Full article
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23 pages, 2001 KB  
Article
Identification of DNA Methyltransferase/Demethylase Genes and 5-Azacytidine’s Impact on β-Elemene and Methylation in Curcuma wenyujin
by Xiu Yin, Jiawei Ma, Zhenlu Shen, Qian Wang, Mengdie Xu, Tianyuan Hu, Qiuhui Wei, Xiaopu Yin and Xiaoxia Ma
Biology 2025, 14(12), 1739; https://doi.org/10.3390/biology14121739 - 4 Dec 2025
Viewed by 423
Abstract
Curcuma wenyujin (C. wenyujin) is a Dao-di geoherb. It depends on specific ecological conditions. DNA methylation (5mC) mediates environmental stress responses, regulating both growth and bioactive compound synthesis. This implies epigenetic control of secondary metabolism in C. wenyujin. However, its [...] Read more.
Curcuma wenyujin (C. wenyujin) is a Dao-di geoherb. It depends on specific ecological conditions. DNA methylation (5mC) mediates environmental stress responses, regulating both growth and bioactive compound synthesis. This implies epigenetic control of secondary metabolism in C. wenyujin. However, its DNA methylation patterns remain uncharacterized. In this study, we identified five CwC5-MTases and three CwdMTases based on the transcriptome of C. wenyujin. They were responsible for DNA methylation and demethylation, respectively. Structural and integrated phylogenetic analysis classified the five CwC5-MTases into four subfamilies: CwMET, CwCMT, CwDRM, CwDNMT. The three CwdMTases were grouped into the ROS subfamily. Both CwC5-MTases and CwdMTases exhibited the closest evolutionary relationship to their homologs in monocots. Treatment of C. wenyujin seedlings with the DNA methyltransferase inhibitor 5-azacytidine (5-Az) enhanced terpenoid biosynthesis. QPCR analysis demonstrated that this treatment significantly upregulated key biosynthetic genes, with the exception of CwDXS. Subsequent GC detection further revealed a concomitant increase in the accumulation of β-elemene. Furthermore, Methylation-Sensitive Amplification Polymorphism (MSAP) analysis revealed that 5-Az altered global DNA methylation patterns. It primarily induced demethylation events. Finally, we explored the nature of these MSAP bands with altered methylation patterns. Gene identification and the effects of 5-Az on terpenoid biosynthesis and methylation not only elucidate the potential role of DNA methylation in secondary metabolism in C. wenyujin but also provide novel insights into the molecular mechanisms underlying its geoherbalism. This research opens a new avenue for breeding high-yield and stress-tolerant cultivars. Full article
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18 pages, 1878 KB  
Article
Cell Suspension of the Tree Fern Cyathea smithii (J.D. Hooker) and Its Metabolic Potential During Cell Growth: Preliminary Studies
by Jan J. Rybczyński, Łukasz Marczak, Katarzyna Skórkowska-Telichowska, Maciej Stobiecki, Jan Szopa and Anna Mikuła
Int. J. Mol. Sci. 2025, 26(23), 11683; https://doi.org/10.3390/ijms262311683 - 2 Dec 2025
Viewed by 398
Abstract
The purpose of this study was to present a chemical analysis of the metabolome of cell aggregates of the tree fern Cyathea smithii (J.D. Hooker) cell suspension culture. The LC/MS and GC/MS techniques were used for identification of metabolites. The kinetics of fresh [...] Read more.
The purpose of this study was to present a chemical analysis of the metabolome of cell aggregates of the tree fern Cyathea smithii (J.D. Hooker) cell suspension culture. The LC/MS and GC/MS techniques were used for identification of metabolites. The kinetics of fresh weight, dry weight, and ash content showed 3.5-fold increases during 15-day-long culture. The analysis demonstrated high metabolic activity of cultured cells. In total, 160 metabolites from primary and secondary metabolism and almost 2000 compounds of unknown identity were identified. Three flavonoids—the chalcone isookanin [(2S)-2-(3,4-dihydroxyphenyl)-7,8-dihydroxy-2,3-dihydrochromen-4-one], a methoxy derivative of the flavone gardenin B (5-Hydroxy-2-(4-methoxyphenyl)-6,7,8-trimethoxy-4H-1-benzopyran-4-one), and the isoflavone tectoridin (4′,5-Dihydro-6-methoxy-7-(O-glucoside)isoflavone)—had not been previously detected in the cell culture of C. smithii. Principal component analysis revealed five distinct groups of samples; groups 4 and 5 showed the greatest similarity and corresponded to cultures on days 12 and 15, respectively. The number of differentiating compounds was 75, indicated by a heatmap showing positive and negative correlations between the days of culture. The studies described in this paper are crucial for further identification of metabolites and establishing the relationship between the metabolic composition of tree fern cells in culture and their biological activity, assessed by physiological parameters. By determining the relationship between the chemical composition of cells and their growth from culture initiation to senescence, we will provide a more complete picture of the potential for environmental factors to regulate this relationship. Based on previous studies, environmental stimuli such as electromagnetic fields or light of different wavelengths can result in altered growth physiology and cell mass, as well as metabolite diversification and accumulation. The research results presented in this paper provide a foundation for further studies aimed at predicting and regulating the productivity of C. smithii cells in suspension culture and elucidating the significance of tree fern-derived metabolic products in human cell biology, particularly in thyroid cells. Full article
(This article belongs to the Special Issue Molecular Approach to Fern Development)
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18 pages, 971 KB  
Article
Lipophilic Substances of the Leaves and Inflorescences of Centaurea scabiosa L.: Their Composition and Activity Against the Main Protease of SARS-CoV-2
by Tatiana P. Kukina, Ivan A. Elshin, Maria K. Marenina, Evgeniia A. Kolosova, Yulia V. Meshkova, Ol’ga I. Sal’nikova, Svetlana V. Belenkaya, Ekaterina A. Volosnikova, Mikhail V. Khvostov and Dmitry N. Shcherbakov
Molecules 2025, 30(23), 4568; https://doi.org/10.3390/molecules30234568 - 27 Nov 2025
Viewed by 526
Abstract
The composition of the lipophilic components of Centaurea scabiosa L. has been studied. The raw material was subjected to extraction with hexane and methyl tert-butyl ether (MTBE) using both exhaustive and sequential schemes for a detailed characterization. The resulting extracts were fractionated into [...] Read more.
The composition of the lipophilic components of Centaurea scabiosa L. has been studied. The raw material was subjected to extraction with hexane and methyl tert-butyl ether (MTBE) using both exhaustive and sequential schemes for a detailed characterization. The resulting extracts were fractionated into acidic and neutral components via treatment with alkali solutions. The acidic compounds were converted into methyl esters for subsequent gas chromatography–mass spectrometry (GC-MS) analysis, while the neutral unsaponifiable fractions were separated into groups of different polarities using column chromatography on silica gel. This approach enabled the identification of a complex profile of lipophilic substances. In the acidic fractions, aliphatic acids with chain lengths from C10 to C32, including unsaturated variants, were characterized. The neutral fractions revealed over compounds, encompassing n-alkanes, substantial levels of the unsaturated branched hydrocarbon squalene, and a diverse array of oxygenated terpenoids. The latter were mainly represented by highly active triterpene alcohols and ketones belonging to the ursane, oleanane, lupane, and cycloartane types. The sterol composition was dominated by β-sitosterol and accompanied by cholesterol, campesterol, stigmasterol, stigmast-7-en-3-β-ol, fucosterol, and stigmastan-3-β-ol. Bioactivity screening demonstrated that several of the obtained lipophilic extracts, particularly those of lower polarity, exhibited high inhibitory activity against the main protease of SARS-CoV-2, underscoring the potential of C. scabiosa as a valuable source of anti-coronavirus agents. Full article
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27 pages, 23727 KB  
Article
Isolation and Genome-Based Characterization of Bacillus velezensis AN6 for Its Biocontrol Potential Against Multiple Plant Pathogens
by Liping Yang, Anyu Gu, Wei Deng, Shu Che, Jianhua Zhang, Jinwen Zhang, Limei Kui, Jian Tu, Wei Dong, Hua An, Junjiao Guan, Jiaqin Fan, Xiqiong Shen and Xiaolin Li
Microorganisms 2025, 13(12), 2701; https://doi.org/10.3390/microorganisms13122701 - 27 Nov 2025
Viewed by 644
Abstract
Biological control is an effective and environmentally friendly strategy for managing plant diseases. In this study, a broad-spectrum antagonistic bacterium, designated strain AN6, was isolated from rice plants and exhibited potent inhibitory activity against a variety of phytopathogens. In Oxford cup assays, AN6 [...] Read more.
Biological control is an effective and environmentally friendly strategy for managing plant diseases. In this study, a broad-spectrum antagonistic bacterium, designated strain AN6, was isolated from rice plants and exhibited potent inhibitory activity against a variety of phytopathogens. In Oxford cup assays, AN6 suppressed the growth of Xanthomonas oryzae pv. oryzae (Xoo) by 73.60%, and its cell-free culture filtrate caused pronounced morphological deformation in the bacterial cells. Further in vitro assays, including dual-culture assays, volatile organic compound (VOC) assays, and cell-free supernatant (CFS) assays, demonstrated that AN6 also exerted strong antifungal effects against several pathogenic fungi. In addition, the strain was found to produce proteases and siderophores, which may contribute to its antagonistic capabilities. Taxonomic identification based on morphological traits, 16S rRNA and gyrA gene sequencing, average nucleotide identity (ANI), in silico DNA–DNA hybridization (isDDH), and phylogenetic analysis classified strain AN6 as Bacillus velezensis. Whole-genome sequencing revealed that AN6 harbors a 3,929,788 bp genome comprising 4025 protein-coding genes with a GC content of 46.50%. Thirteen biosynthetic gene clusters (BGCs) associated with the production of secondary metabolites—such as nonribosomal peptides, polyketides, and dipeptide antibiotics—were identified. The pot experiment further validated the biocontrol potential of AN6, achieving an 80.49% reduction in rice bacterial blight caused by Xanthomonas oryzae pv. oryzae. Collectively, these results indicate that B. velezensis AN6 is a promising candidate for development as a highly effective biocontrol agent for the integrated management of diverse plant diseases. Full article
(This article belongs to the Special Issue Biological Control of Microbial Pathogens in Plants)
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