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Search Results (531)

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16 pages, 1212 KiB  
Article
Harnessing Mixed Fatty Acid Synergy for Selective Flotation of Apatite from Calcite and Quartz with Sodium Alginate
by Imane Aarab, Khalid El Amari, Abdelrani Yaacoubi, Abdelaziz Baçaoui and Abderahman Etahiri
Minerals 2025, 15(8), 822; https://doi.org/10.3390/min15080822 (registering DOI) - 1 Aug 2025
Viewed by 35
Abstract
Maximizing the efficient utilization of critical apatite resources through flotation necessitates the exploration of effective and innovative collectors. This study investigates the potential of a fatty acid mixture (FAM) synthesized from saturated palmitic and stearic acids, monounsaturated oleic and palmitoleic acids, and polyunsaturated [...] Read more.
Maximizing the efficient utilization of critical apatite resources through flotation necessitates the exploration of effective and innovative collectors. This study investigates the potential of a fatty acid mixture (FAM) synthesized from saturated palmitic and stearic acids, monounsaturated oleic and palmitoleic acids, and polyunsaturated linoleic acid. The saponified collector FAM and the depressant sodium alginate (NaAl) achieved a direct flotation of apatite from calcite and quartz (97% apatite, 10% calcite, and 7% quartz). The flotation performance with the tested combination exhibited a highly effective enrichment of apatite, mainly from calcite, which aligns with the surface chemistry assessments. Adsorption tests and zeta potential measurements confirmed the micro-flotation results. They provided compelling evidence of a chemisorption interaction between Ca2+ sites on calcite and the carboxyl and hydroxyl groups of NaAl. FTIR analyses suggested a reaction between the apatite surface and the carboxyl groups of saturated and unsaturated acid groups in FAM, even those conditioned with NaAl before, facilitating the complex formation. Remarkably, the synergistic effect of the functional groups demonstrates dual functionality, serving as both a hydrophilic entity for calcite and a hydrophobic entity for apatite flotation. The universal mechanism unveils substantial potential for the extensive application of FAM within apatite flotation. Full article
(This article belongs to the Special Issue Surface Chemistry and Reagents in Flotation)
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27 pages, 2602 KiB  
Article
Folate-Modified Albumin-Functionalized Iron Oxide Nanoparticles for Theranostics: Engineering and In Vitro PDT Treatment of Breast Cancer Cell Lines
by Anna V. Bychkova, Maria G. Gorobets, Anna V. Toroptseva, Alina A. Markova, Minh Tuan Nguyen, Yulia L. Volodina, Margarita A. Gradova, Madina I. Abdullina, Oksana A. Mayorova, Valery V. Kasparov, Vadim S. Pokrovsky, Anton V. Kolotaev and Derenik S. Khachatryan
Pharmaceutics 2025, 17(8), 982; https://doi.org/10.3390/pharmaceutics17080982 - 30 Jul 2025
Viewed by 298
Abstract
Background/Objectives: Magnetic iron oxide nanoparticles (IONPs), human serum albumin (HSA) and folic acid (FA) are prospective components for hybrid nanosystems for various biomedical applications. The magnetic nanosystems FA-HSA@IONPs (FAMs) containing IONPs, HSA, and FA residue are engineered in the study. Methods: [...] Read more.
Background/Objectives: Magnetic iron oxide nanoparticles (IONPs), human serum albumin (HSA) and folic acid (FA) are prospective components for hybrid nanosystems for various biomedical applications. The magnetic nanosystems FA-HSA@IONPs (FAMs) containing IONPs, HSA, and FA residue are engineered in the study. Methods: Composition, stability and integrity of the coating, and peroxidase-like activity of FAMs are characterized using UV/Vis spectrophotometry (colorimetric test using o-phenylenediamine (OPD), Bradford protein assay, etc.), spectrofluorimetry, dynamic light scattering (DLS) and electron magnetic resonance (EMR). The selectivity of the FAMs accumulation in cancer cells is analyzed using flow cytometry and confocal laser scanning microscopy. Results: FAMs (dN~55 nm by DLS) as a drug delivery platform have been administered to cancer cells (human breast adenocarcinoma MCF-7 and MDA-MB-231 cell lines) in vitro. Methylene blue, as a model photosensitizer, has been non-covalently bound to FAMs. An increase in photoinduced cytotoxicity has been found upon excitation of the photosensitizer bound to the coating of FAMs compared to the single photosensitizer at equivalent concentrations. The suitability of the nanosystems for photodynamic therapy has been confirmed. Conclusions: FAMs are able to effectively enter cells with increased folate receptor expression and thus allow antitumor photosensitizers to be delivered to cells without any loss of their in vitro photodynamic efficiency. Therapeutic and diagnostic applications of FAMs in oncology are discussed. Full article
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16 pages, 2860 KiB  
Article
Maritime Spectrum Sensing Based on Cyclostationary Features and Convolutional Neural Networks
by Xuan Geng and Boyu Hu
Entropy 2025, 27(8), 809; https://doi.org/10.3390/e27080809 - 28 Jul 2025
Viewed by 165
Abstract
For maritime cognitive radio networks (MCRN), spectrum sensing (SS) is challenging due to the movement of the sea, channel interference, and unstable link quality. Besides the basic sensing capabilities that are required, SS in MCRN also requires the ability to adapt to complex [...] Read more.
For maritime cognitive radio networks (MCRN), spectrum sensing (SS) is challenging due to the movement of the sea, channel interference, and unstable link quality. Besides the basic sensing capabilities that are required, SS in MCRN also requires the ability to adapt to complex and dynamic environments. By transforming spectrum sensing into a classification problem and leveraging cyclostationary features and Convolutional Neural Networks (CNN), This paper proposes a classification-guided TC2NND (Transfer Cyclostationary- feature and Convolutional Neural Networks Detection) spectrum sensing algorithm, which regards the maritime spectrum sensing as a classification problem. The TC2NND algorithm first classifies the received signal features by extracting cycle power spectrum (CPS) features using the FFT (Fast Fourier Transform) Accumulation Method (FAM), and then makes a judgment using a variety of C2NND decision models. The experimental results demonstrate that the proposed TC2NND algorithm could achieve a detection probability of 91.5% with a false-alarm probability of 5% at SNR = −10 dB, which significantly outperforms the conventional methods. Full article
(This article belongs to the Special Issue Space-Air-Ground-Sea Integrated Communication Networks)
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26 pages, 6051 KiB  
Article
A Novel Sound Coding Strategy for Cochlear Implants Based on Spectral Feature and Temporal Event Extraction
by Behnam Molaee-Ardekani, Rafael Attili Chiea, Yue Zhang, Julian Felding, Aswin Adris Wijetillake, Peter T. Johannesen, Enrique A. Lopez-Poveda and Manuel Segovia-Martínez
Technologies 2025, 13(8), 318; https://doi.org/10.3390/technologies13080318 - 23 Jul 2025
Viewed by 329
Abstract
This paper presents a novel cochlear implant (CI) sound coding strategy called Spectral Feature Extraction (SFE). The SFE is a novel Fast Fourier Transform (FFT)-based Continuous Interleaved Sampling (CIS) strategy that provides less-smeared spectral cues to CI patients compared to Crystalis, a predecessor [...] Read more.
This paper presents a novel cochlear implant (CI) sound coding strategy called Spectral Feature Extraction (SFE). The SFE is a novel Fast Fourier Transform (FFT)-based Continuous Interleaved Sampling (CIS) strategy that provides less-smeared spectral cues to CI patients compared to Crystalis, a predecessor strategy used in Oticon Medical devices. The study also explores how the SFE can be enhanced into a Temporal Fine Structure (TFS)-based strategy named Spectral Event Extraction (SEE), combining spectral sharpness with temporal cues. Background/Objectives: Many CI recipients understand speech in quiet settings but struggle with music and complex environments, increasing cognitive effort. De-smearing the power spectrum and extracting spectral peak features can reduce this load. The SFE targets feature extraction from spectral peaks, while the SEE enhances TFS-based coding by tracking these features across frames. Methods: The SFE strategy extracts spectral peaks and models them with synthetic pure tone spectra characterized by instantaneous frequency, phase, energy, and peak resemblance. This deblurs input peaks by estimating their center frequency. In SEE, synthetic peaks are tracked across frames to yield reliable temporal cues (e.g., zero-crossings) aligned with stimulation pulses. Strategy characteristics are analyzed using electrodograms. Results: A flexible Frequency Allocation Map (FAM) can be applied to both SFE and SEE strategies without being limited by FFT bandwidth constraints. Electrodograms of Crystalis and SFE strategies showed that SFE reduces spectral blurring and provides detailed temporal information of harmonics in speech and music. Conclusions: SFE and SEE are expected to enhance speech understanding, lower listening effort, and improve temporal feature coding. These strategies could benefit CI users, especially in challenging acoustic environments. Full article
(This article belongs to the Special Issue The Challenges and Prospects in Cochlear Implantation)
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20 pages, 4705 KiB  
Article
GRK5 as a Novel Therapeutic Target for Immune Evasion in Testicular Cancer: Insights from Multi-Omics Analysis and Immunotherapeutic Validation
by Congcong Xu, Qifeng Zhong, Nengfeng Yu, Xuqiang Zhang, Kefan Yang, Hao Liu, Ming Cai and Yichun Zheng
Biomedicines 2025, 13(7), 1775; https://doi.org/10.3390/biomedicines13071775 - 21 Jul 2025
Viewed by 335
Abstract
Background: Personalized anti-tumor therapy that activates the immune response has demonstrated clinical benefits in various cancers. However, its efficacy against testicular cancer (TC) remains uncertain. This study aims to identify suitable patients for anti-tumor immunotherapy and to uncover potential therapeutic targets in TC [...] Read more.
Background: Personalized anti-tumor therapy that activates the immune response has demonstrated clinical benefits in various cancers. However, its efficacy against testicular cancer (TC) remains uncertain. This study aims to identify suitable patients for anti-tumor immunotherapy and to uncover potential therapeutic targets in TC for the development of tailored anti-tumor immunotherapy. Methods: Consensus clustering analysis was conducted to delineate immune subtypes, while weighted gene co-expression network analysis (WGCNA), least absolute shrinkage and selection operator (LASSO) regression, and support vector machine (SVM) algorithms were employed to evaluate the potential efficacy of anti-tumor immunotherapy. Candidate immunotherapy targets were systematically identified through multi-gene panel analyses and subsequently validated using molecular biology assays. A prioritized target emerging from cellular screening was further evaluated for its capacity to potentiate anti-tumor immunity. The therapeutic efficacy of this candidate was rigorously confirmed through a comprehensive suite of immunological experiments. Results: Following systematic screening of five candidate genes (WNT11, FAM181B, GRK5, FSCN1, and ECHS1), GRK5 emerged as a promising therapeutic target for immunotherapy based on its distinct functional and molecular associations with immune evasion mechanisms. Cellular functional assays revealed that GRK5 knockdown significantly attenuated the malignant phenotype of testicular cancer cells, as evidenced by reduced proliferative capacity and invasive potential. Complementary immunological validation established that specific targeting of GRK5 with the selective antagonist GRK5-IN-2 disrupts immune evasion pathways in testicular cancer, as quantified by T-cell-mediated cytotoxicity. Conclusions: These findings position GRK5 as a critical modulator of tumor-immune escape, warranting further preclinical exploration of GRK5-IN-2 as a candidate immunotherapeutic agent. Full article
(This article belongs to the Section Immunology and Immunotherapy)
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23 pages, 1935 KiB  
Review
Heterologous Caseins: The Role of Phosphorylation in Their Functionality and How to Achieve It
by Soledad Mora Vásquez, Santiago García-Jacobo, Guy A. Cardineau and Silverio García-Lara
Biomolecules 2025, 15(7), 1031; https://doi.org/10.3390/biom15071031 - 17 Jul 2025
Viewed by 355
Abstract
Heterologous expression of caseins in non-mammalian systems offers a sustainable and scalable alternative for producing milk proteins, with potential applications in the food and biopharmaceutical industries. However, a significant challenge in these systems is achieving proper phosphorylation, a critical post-translational modification required for [...] Read more.
Heterologous expression of caseins in non-mammalian systems offers a sustainable and scalable alternative for producing milk proteins, with potential applications in the food and biopharmaceutical industries. However, a significant challenge in these systems is achieving proper phosphorylation, a critical post-translational modification required for casein functionality and stability. This review explores the current state of research on heterologous casein production, with a particular focus on the biological and technical hurdles associated with phosphorylation. Specifically, we examine the absence of the mammalian-specific kinase Fam20C in plant and yeast systems and the broader lack of secretory kinase machinery in bacteria, which collectively contribute to impaired phosphorylation fidelity. While some endogenous kinases may partially compensate, they are typically insufficient to replicate the phosphorylation pattern required for functionality. We evaluate potential strategies to address these limitations, analyze the role of phosphorylation in casein functionality, provide insights into existing patents and experimental approaches, and highlight ongoing research efforts. By synthesizing current knowledge and proposing new avenues for innovation, this review aims to provide a roadmap for the successful production of functional heterologous caseins. Full article
(This article belongs to the Section Molecular Biology)
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11 pages, 1375 KiB  
Article
Dual Signal Enhancement by Magnetic Separation and Split Aptamer for Ultrasensitive T-2 Toxin Detection
by Ziyi Yan, Ping Zhu, Chaoyi Zhou, Dezhao Kong and Hua Ye
Molecules 2025, 30(13), 2853; https://doi.org/10.3390/molecules30132853 - 4 Jul 2025
Viewed by 346
Abstract
T-2 toxin, a type A trichothecene mycotoxin produced by Fusarium species, is widely present in cereals and their processed products, posing a significant contaminant in food safety. To address the food safety challenges caused by this toxin, we established a dual signal enhancement [...] Read more.
T-2 toxin, a type A trichothecene mycotoxin produced by Fusarium species, is widely present in cereals and their processed products, posing a significant contaminant in food safety. To address the food safety challenges caused by this toxin, we established a dual signal enhancement by magnetic separation and split aptamer for ultrasensitive T-2 toxin detection. In this method, the introduction of magnetic graphene oxide (MGO) enhanced signal and increased sensitivity by reducing background interference. The shortened split aptamer reduces non-specific binding to MGO via decreased steric hindrance, thereby facilitating rapid target-induced dissociation and signal generation. A FAM fluorophore-labeled split aptamer probe FAM-SpA1-1 was quenched by MGO. While the fluorescence intensity remained nearly unchanged when the unlabeled split aptamer probe SpA1-2 was introduced alone, a significant fluorescence recovery was observed upon simultaneous addition of SpA1-2 and T-2 toxin. This recovery resulted from the cooperative binding of SpA1-1 and SpA1-2 to T-2 toxin, which distanced the FAM-SpA1-1 probe from MGO. Therefore, the proposed biosensor demonstrated excellent stability, reproducibility, and specificity, with a linear response range of 10–500 pM and a limit of detection (LOD) of 0.83 pM. Satisfactory recovery rates were achieved in spiked wheat (86.0–114.2%) and beer (112.0–129.6%) samples, highlighting the biosensor’s potential for practical applications in real-sample detection. This study establishes the T-2 toxin split aptamer and demonstrates a novel dual-signal enhancement paradigm that pushes the sensitivity frontier of aptamer-based mycotoxin sensors. Full article
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22 pages, 9021 KiB  
Article
Population Cohort-Validated PM2.5-Induced Gene Signatures: A Machine Learning Approach to Individual Exposure Prediction
by Yu-Chung Wei, Wen-Chi Cheng, Pinpin Lin, Zhi-Yao Zhang, Chi-Hsien Chen, Chih-Da Wu, Yue Leon Guo and Hung-Jung Wang
Toxics 2025, 13(7), 562; https://doi.org/10.3390/toxics13070562 - 30 Jun 2025
Viewed by 395
Abstract
Transcriptomic profiling has shown that exposure to PM2.5, a common air pollutant, can modulate gene expression, which has been linked to negative health effects and diseases. However, there are few population-based cohort studies on the association between PM2.5 exposure and [...] Read more.
Transcriptomic profiling has shown that exposure to PM2.5, a common air pollutant, can modulate gene expression, which has been linked to negative health effects and diseases. However, there are few population-based cohort studies on the association between PM2.5 exposure and specific gene set expression. In this study, we used an unbiased transcriptomic profiling approach to examine gene expression in a mouse model exposed to PM2.5 and to identify PM2.5-responsive genes. The gene expressions were further validated in both the human cell lines and a population-based cohort study. Two cohorts of healthy older adults (aged ≥ 65 years) were recruited from regions characterized by differing levels of PM2.5. Logistic regression and decision tree algorithms were then utilized to construct predictive models for PM2.5 exposure based on these gene expression profiles. Our results indicated that the expression of five genes (FAM102B, PPP2R1B, OXR1, ITGAM, and PRP38B) increased with PM2.5 exposure in both cell-based assay and population-based cohort studies. Furthermore, the predictive models demonstrated high accuracy in classifying high-and-low PM2.5 exposure, potentially supporting the integration of gene biomarkers into public health practices. Full article
(This article belongs to the Section Air Pollution and Health)
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20 pages, 5668 KiB  
Article
A Hydrophobic Ratiometric Fluorescent Indicator Film Using Electrospinning for Visual Monitoring of Meat Freshness
by Xiaodong Zhai, Xingdan Ma, Yue Sun, Yuhong Xue, Wanwan Ban, Wenjun Song, Tingting Shen, Zhihua Li, Xiaowei Huang, Qing Sun, Kunlong Wu, Zhilong Chen, Wenwu Zou, Biao Liu, Liang Zhang and Jiaji Zhu
Foods 2025, 14(13), 2200; https://doi.org/10.3390/foods14132200 - 23 Jun 2025
Viewed by 469
Abstract
A ratiometric fluorescent film with high gas sensitivity and stability was developed using electrospinning technology for monitoring food spoilage. 5(6)-Carboxyfluorescein (5(6)-FAM) was used as the indicator, combined with the internal reference Rhodamine B (RHB), to establish a composite ratiometric fluorescent probe (FAM@RHB). The [...] Read more.
A ratiometric fluorescent film with high gas sensitivity and stability was developed using electrospinning technology for monitoring food spoilage. 5(6)-Carboxyfluorescein (5(6)-FAM) was used as the indicator, combined with the internal reference Rhodamine B (RHB), to establish a composite ratiometric fluorescent probe (FAM@RHB). The hydrophobic fluorescent films were fabricated by incorporating FAM@RHB probes into polyvinylidene fluoride (PVDF) at varying molar ratios through electrospinning. The FR-2 film with a 2:8 ratio of 5(6)-FAM to RHB exhibited the best performance, demonstrating excellent hydrophobicity with a water contact angle (WCA) of 113.45° and good color stability, with a ΔE value of 2.05 after 14 days of storage at 4 °C. Gas sensitivity tests indicated that FR-2 exhibited a limit of detection (LOD) of 0.54 μM for trimethylamine (TMA). In the application of monitoring the freshness of pork and beef at 4 °C, the fluorescence color of the FR-2 film significantly changed from orange–yellow to green, enabling the visual monitoring of meat freshness. Hence, this study provides a new approach for intelligent food packaging. Full article
(This article belongs to the Special Issue Novel Smart Packaging in Foods)
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26 pages, 9470 KiB  
Article
Mt. Fuji in the Ocean–Description of a Strange New Species of Sea Anemone, Discoactis tritentaculata fam., gen., and sp. nov. (Cnidaria; Anthozoa; Actiniaria; Actinostoloidea) from Japan, with the Foundation of a New Family and Genus
by Takato Izumi, Kensuke Yanagi and Hisanori Kohtsuka
Diversity 2025, 17(6), 430; https://doi.org/10.3390/d17060430 - 18 Jun 2025
Viewed by 1690
Abstract
A new species in a new family and genus of sea anemone, Discoactis tritentaculata fam. gen. and sp. nov., was discovered at several localities around Japan. These anemones were indicated to belong to the superfamily Actinostoloidea by phylogenetic analyses. However, the specimens have [...] Read more.
A new species in a new family and genus of sea anemone, Discoactis tritentaculata fam. gen. and sp. nov., was discovered at several localities around Japan. These anemones were indicated to belong to the superfamily Actinostoloidea by phylogenetic analyses. However, the specimens have flat, disc-like bodies; triplet tentacles on the oral disc; endocoels without tentacles; 10 macrocnemes in the column; and numerous microcnemes only in the aboral end. These features are unique among not only Actinostoloidea but also sea anemones in general, and thus they could not be accommodated into any existing families and genera in Actinostoloidea. Therefore, we establish the new family Discoactinidae and the new genus Discoactis for this species of anemone. Our phylogenetic analyses also suggested that the family Capneidae, of which the phylogenetic position has not been certainly convinced yet, also should be a member of Actinostoloidea, and thus we revised its placement and discussed the diagnosis of the superfamily. With these results, the superfamily Actinostoloidea now accommodates eight families. Full article
(This article belongs to the Special Issue Taxonomy, Phylogeny and Biogeography of Cnidaria)
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16 pages, 2604 KiB  
Article
Flow Cytometric Quantification of Mitochondrial Properties: A High-Throughput Approach for Single Organelle Analysis
by Andrew J. Piasecki, Hannah C. Sheehan, Jonathan L. Tilly and Dori C. Woods
Int. J. Mol. Sci. 2025, 26(12), 5481; https://doi.org/10.3390/ijms26125481 - 7 Jun 2025
Viewed by 1106
Abstract
Recent advances in flow cytometry facilitate the detection of subcellular components, such as organelles and vesicles. Fluorescence-activated mitochondria sorting (FAMS) is a flow cytometry-based technique that allows for quantitative analysis and sorting of mitochondria as individual organelles from various tissues and in vitro [...] Read more.
Recent advances in flow cytometry facilitate the detection of subcellular components, such as organelles and vesicles. Fluorescence-activated mitochondria sorting (FAMS) is a flow cytometry-based technique that allows for quantitative analysis and sorting of mitochondria as individual organelles from various tissues and in vitro cell culture. This manuscript details three novel applications of this technique to study mitochondrial function on an organelle-specific level, which is not possible with other approaches. Specifically, we detail the further development and versatility of this nanoscaled flow cytometry approach, including assays to quantitatively assess mitochondrial subpopulations, mitochondrial protein translocation, and both free-floating and EV-encapsulated secreted mitochondria. We demonstrate a multi-parameter quantitative assay for the analysis of mitochondrial autophagy using antibodies targeting the proteins PINK1 and Parkin corresponding to ΔΨM and further show how these can be assessed for mtDNA content on a single organelle level. Further, we establish parameters for the size and surface marker-based analysis of EVs, many of which contain identifiable and respiring mitochondria, as well as free-floating respiratory-competent mitochondria. These results display the versatility of nanoscaled flow cytometry in terms of both sample input and target organelle and provide an important methodological means for the quantitative assessment of mitochondrial features. Full article
(This article belongs to the Special Issue Flow Cytometry: Applications and Challenges)
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17 pages, 3504 KiB  
Article
Flaxseed Extracts Impact the Cellular Structure of a Keratinocyte Model for Oral Lichen Planus—A Preliminary Study
by Irena Duś-Ilnicka, Anna Prescha, Amanda Mordal, Kamila Środa-Pomianek, Beata Sobieszczańska, Monika Bielecka, Żaneta Czyżnikowska, Jakub Szperlik, Adam Matkowski and Małgorzata Radwan-Oczko
Int. J. Mol. Sci. 2025, 26(12), 5462; https://doi.org/10.3390/ijms26125462 - 6 Jun 2025
Viewed by 587
Abstract
Oral inflammation and the immune response are distinct but related processes where Linum usitatissimum L., fam. Linaceae represents a possible use for localized relief. Oral lichen planus (OLP) is an oral potentially malignant disorder (OPMD) with an inflammatory background that mainly affects post- [...] Read more.
Oral inflammation and the immune response are distinct but related processes where Linum usitatissimum L., fam. Linaceae represents a possible use for localized relief. Oral lichen planus (OLP) is an oral potentially malignant disorder (OPMD) with an inflammatory background that mainly affects post- and peri-menopausal women. The presented methodology was threefold. Firstly, the plant extracts were made from flaxseeds of selected cultivars (Szafir [SZ] and Jantarol [JA]) containing plant lignans. In silico docking affinity was performed to verify the beta and alpha estrogen receptors of keratinocytes’ (ERα and ERβ) affinity for lignans from the plant extracts. Lastly, tests using living keratinocyte cell lines were performed. Adding the studied extracts from two cultivars of flaxseed—JA and SZ (10 µg/mL) reduced lipopolysaccharides (LPS)—induced cell inflammation markers levels of COX-2 and IL-6. The effect of JA was more pronounced than that of SZ, with statistical significance (p < 0.05). A high in silico affinity was provided during secoisolariciresinol diglucoside (SDG) docking to ERα and ERβ. Flaxseed’s action could be based on the docking affinity of its major components to the estrogen receptors and the overall concentration of the elements of the extracts. Full article
(This article belongs to the Special Issue Oral Soft Tissue Repair and Oral Diseases: 2nd Edition)
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19 pages, 8217 KiB  
Article
FAM111B Overexpression and Immune Cell Infiltration: Implications for Ovarian Cancer Immunotherapy
by Wanying Li, Fang Wei, Ting Zhou, Lijuan Feng and Lihong Zhang
Biomedicines 2025, 13(6), 1295; https://doi.org/10.3390/biomedicines13061295 - 24 May 2025
Viewed by 646
Abstract
Background: Ovarian cancer (OC) is characterized by high incidence and mortality rates; however, due to its immunologically “cold” phenotype, the effectiveness of immunotherapy as a strategy for OC remains inadequate. Although the FAM111B gene promotes the progression of various solid tumors, its [...] Read more.
Background: Ovarian cancer (OC) is characterized by high incidence and mortality rates; however, due to its immunologically “cold” phenotype, the effectiveness of immunotherapy as a strategy for OC remains inadequate. Although the FAM111B gene promotes the progression of various solid tumors, its specific function within the tumor immune microenvironment (TIME) of OC remains unclear. Methods: This study used multiplex immunofluorescence techniques and bioinformatics analysis to examine the role of FAM111B within the TIME of OC. Through multiplex immunofluorescence, we assessed the protein expression levels of FAM111B alongside key immune cell markers, including FOXP3, CD4, CD8, CD68, CD163, CD66b, and CD11c. Furthermore, we employed bioinformatics methods using The Cancer Genome Atlas database to validate FAM111B function at the mRNA level in OC. Results: We observed a positive correlation between FAM111B expression and immune cell infiltration, including T cells, macrophages, and dendritic cells. FAM111B, M2 macrophages, and regulatory T cells were associated with poorer overall survival in OC patients. Additionally, specific T cell subsets and dendritic cells were correlated positively with programmed death-ligand 1 expression, while FAM111B levels were linked to multiple immune checkpoint molecules. Conclusions: This study reveals a positive correlation between FAM111B overexpression and the infiltration levels of immune cells in OC. In OC patients characterized by elevated FAM111B expression, the potential augmentation of immune cell infiltration within the TIME may consequently enhance the efficacy of immunotherapy. Full article
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17 pages, 3117 KiB  
Article
Arabidopsis P4-ATPases ALA1 and ALA7 Enhance Resistance to Verticillium dahliae via Detoxifying Vd-Toxins
by Fanlong Wang, Mingliang Qiu, Xiaoxia Yao, Jiancong Li, Hui Ren, Mei Su, Jiaohuan Shen, Caiwang Li, Qian Jiang, Zixuan Zhang, Yundi Li, Jiyu Tang, Xianbi Li, Yanhua Fan and Yan Pei
Biology 2025, 14(6), 595; https://doi.org/10.3390/biology14060595 - 23 May 2025
Viewed by 393
Abstract
Background: Verticillium wilt, which is a soil-borne vascular disease, causes serious economic losses worldwide. Various toxins secreted by V. dahliae are key factors that lead to wilt symptoms. Methods: The Vd-toxins CIA, indazole, and 3ICD were labeled with fluorescence groups, respectively, to observe [...] Read more.
Background: Verticillium wilt, which is a soil-borne vascular disease, causes serious economic losses worldwide. Various toxins secreted by V. dahliae are key factors that lead to wilt symptoms. Methods: The Vd-toxins CIA, indazole, and 3ICD were labeled with fluorescence groups, respectively, to observe the transport pathway. Transcriptome sequencing and qRT-PCR were employed to assess the expression patterns under Vd-toxin treatment. Results: AtALA1 and AtALA7 were up-regulated by V. dahliae and LC-toxins, and overexpression of either AtALA1 or AtALA7 increased Arabidopsis resistance against LC-toxins. Overexpression of AtALA1 improved the resistance of Arabidopsis to 4MBA, 3ICD, and indazole, while AtALA7 enhanced resistance to 4MBA, 3ICD, and CIA. AtALA7-overexpressing plants showed a stronger capability to transport CIAFITC and 3ICD5-FAM into vacuoles, while AtALA1-overexpressing plants accumulated indazole5-FAM and 3ICD5-FAM. Aggregation of AtALA1 and AtALA7 enhances the resistance of plants to V. dahliae. Conclusions: Arabidopsis P4-ATPase genes AtALA1 and AtALA7 mediated cell detoxification by transporting different Vd-toxins to vacuoles for degradation, thereby increasing resistance to Verticillium wilt. Full article
(This article belongs to the Special Issue The Potential of Genetics and Plant Breeding in Crop Improvement)
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35 pages, 18237 KiB  
Article
Effect of Corticosterone on Gene Expression in the Context of Global Hippocampal Transcription
by Grzegorz R. Juszczak, Adrian M. Stankiewicz, Rafał R. Starzyński, Magdalena Ogłuszka and Aneta Jaszczyk
Int. J. Mol. Sci. 2025, 26(10), 4889; https://doi.org/10.3390/ijms26104889 - 21 May 2025
Viewed by 651
Abstract
The composition of genomic mediators of glucocorticoid actions in the brain remains elusive because of low-statistical-power experiments and the associated transcriptomic data with very low consistency. The problem is further exaggerated by the underrepresentation of chronic experiments and the interpretation of differentially expressed [...] Read more.
The composition of genomic mediators of glucocorticoid actions in the brain remains elusive because of low-statistical-power experiments and the associated transcriptomic data with very low consistency. The problem is further exaggerated by the underrepresentation of chronic experiments and the interpretation of differentially expressed genes without understanding their contribution to the total transcriptomic activity. To fill existing gaps in knowledge, we have performed a large transcriptomic experiment, testing the effects of prolonged treatment with corticosterone on the hippocampal transcriptome (RNA sequencing). The experiment showed that prolonged treatment with corticosterone induced a set of transcriptomic effects that were replicable across treatment durations, including genes relevant for human PTSD (Opalin, Pllp, Ttyh2, Lpar1) and prolonged stress in animals (Cnp, Fam163a, Fcrls, Tmem125). Some of the affected genes are specific for oligodendrocytes, neurons, astrocytes, immune cells, the vascular system, and brain ventricles, indicating that glucocorticoids may affect all central nervous system components. The data also showed that the largest changes in expression of corticosterone-responsive genes are restricted to genes with a relatively low expression level and small contribution to the overall pool of mRNAs in the hippocampus. As a result, even a large change in the number of affected genes leads to a small change in the number of newly synthesized mRNA copies. This means, in turn, that the transcriptomic changes induced by corticosterone have low-cost effects on the brain. This specificity of transcriptomic responses also poses a challenge for the interpretation of data and constitutes a potential source of reporting bias in past studies. Therefore, there is a need for further research on products of gene expression, both at the transcriptomic and proteomic levels, during stress conditions. Full article
(This article belongs to the Section Molecular Neurobiology)
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