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Search Results (445)

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Keywords = BR signaling

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15 pages, 2400 KiB  
Article
Robust Prediction of Cardiorespiratory Signals from a Multimodal Physiological System on the Upper Arm
by Kimberly L. Branan, Rachel Kurian, Justin P. McMurray, Madhav Erraguntla, Ricardo Gutierrez-Osuna and Gerard L. Coté
Biosensors 2025, 15(8), 493; https://doi.org/10.3390/bios15080493 - 1 Aug 2025
Viewed by 197
Abstract
Many commercial wearable sensor systems typically rely on a single continuous cardiorespiratory sensing modality, photoplethysmography (PPG), which suffers from inherent biases (i.e., differences in skin tone) and noise (e.g., motion and pressure artifacts). In this research, we present a wearable device that provides [...] Read more.
Many commercial wearable sensor systems typically rely on a single continuous cardiorespiratory sensing modality, photoplethysmography (PPG), which suffers from inherent biases (i.e., differences in skin tone) and noise (e.g., motion and pressure artifacts). In this research, we present a wearable device that provides robust estimates of cardiorespiratory variables by combining three physiological signals from the upper arm: multiwavelength PPG, single-sided electrocardiography (SS-ECG), and bioimpedance plethysmography (BioZ), along with an inertial measurement unit (IMU) providing 3-axis accelerometry and gyroscope information. We evaluated the multimodal device on 16 subjects by its ability to estimate heart rate (HR) and breathing rate (BR) in the presence of various static and dynamic noise sources (e.g., skin tone and motion). We proposed a hierarchical approach that considers the subject’s skin tone and signal quality to select the optimal sensing modality for estimating HR and BR. Our results indicate that, when estimating HR, there is a trade-off between accuracy and robustness, with SS-ECG providing the highest accuracy (low mean absolute error; MAE) but low reliability (higher rates of sensor failure), and PPG/BioZ having lower accuracy but higher reliability. When estimating BR, we find that fusing estimates from multiple modalities via ensemble bagged tree regression outperforms single-modality estimates. These results indicate that multimodal approaches to cardiorespiratory monitoring can overcome the accuracy–robustness trade-off that occurs when using single-modality approaches. Full article
(This article belongs to the Special Issue Wearable Biosensors for Health Monitoring)
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31 pages, 6501 KiB  
Review
From Hormones to Harvests: A Pathway to Strengthening Plant Resilience for Achieving Sustainable Development Goals
by Dipayan Das, Hamdy Kashtoh, Jibanjyoti Panda, Sarvesh Rustagi, Yugal Kishore Mohanta, Niraj Singh and Kwang-Hyun Baek
Plants 2025, 14(15), 2322; https://doi.org/10.3390/plants14152322 - 27 Jul 2025
Viewed by 1224
Abstract
The worldwide agriculture industry is facing increasing problems due to rapid population increase and increasingly unfavorable weather patterns. In order to reach the projected food production targets, which are essential for guaranteeing global food security, innovative and sustainable agricultural methods must be adopted. [...] Read more.
The worldwide agriculture industry is facing increasing problems due to rapid population increase and increasingly unfavorable weather patterns. In order to reach the projected food production targets, which are essential for guaranteeing global food security, innovative and sustainable agricultural methods must be adopted. Conventional approaches, including traditional breeding procedures, often cannot handle the complex and simultaneous effects of biotic pressures such as pest infestations, disease attacks, and nutritional imbalances, as well as abiotic stresses including heat, salt, drought, and heavy metal toxicity. Applying phytohormonal approaches, particularly those involving hormonal crosstalk, presents a viable way to increase crop resilience in this context. Abscisic acid (ABA), gibberellins (GAs), auxin, cytokinins, salicylic acid (SA), jasmonic acid (JA), ethylene, and GA are among the plant hormones that control plant stress responses. In order to precisely respond to a range of environmental stimuli, these hormones allow plants to control gene expression, signal transduction, and physiological adaptation through intricate networks of antagonistic and constructive interactions. This review focuses on how the principal hormonal signaling pathways (in particular, ABA-ET, ABA-JA, JA-SA, and ABA-auxin) intricately interact and how they affect the plant stress response. For example, ABA-driven drought tolerance controls immunological responses and stomatal behavior through antagonistic interactions with ET and SA, while using SnRK2 kinases to activate genes that react to stress. Similarly, the transcription factor MYC2 is an essential node in ABA–JA crosstalk and mediates the integration of defense and drought signals. Plants’ complex hormonal crosstalk networks are an example of a precisely calibrated regulatory system that strikes a balance between growth and abiotic stress adaptation. ABA, JA, SA, ethylene, auxin, cytokinin, GA, and BR are examples of central nodes that interact dynamically and context-specifically to modify signal transduction, rewire gene expression, and change physiological outcomes. To engineer stress-resilient crops in the face of shifting environmental challenges, a systems-level view of these pathways is provided by a combination of enrichment analyses and STRING-based interaction mapping. These hormonal interactions are directly related to the United Nations Sustainable Development Goals (SDGs), particularly SDGs 2 (Zero Hunger), 12 (Responsible Consumption and Production), and 13 (Climate Action). This review emphasizes the potential of biotechnologies to use hormone signaling to improve agricultural performance and sustainability by uncovering the molecular foundations of hormonal crosstalk. Increasing our understanding of these pathways presents a strategic opportunity to increase crop resilience, reduce environmental degradation, and secure food systems in the face of increasing climate unpredictability. Full article
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30 pages, 1655 KiB  
Review
Brassinosteroids in Cucurbits: Modulators of Plant Growth Architecture and Stress Response
by Renata Słomnicka, Magdalena Cieplak, Ana Montserrat Martín-Hernández and Grzegorz Bartoszewski
Int. J. Mol. Sci. 2025, 26(15), 7234; https://doi.org/10.3390/ijms26157234 - 26 Jul 2025
Viewed by 408
Abstract
Brassinosteroids (BRs) are steroid hormones that are essential for plant growth, development, and environmental adaptation. They control the division, elongation, and differentiation of various cell types throughout the entire plant life cycle, affecting growth and the stress response. Therefore, fine-tuning of BR biosynthesis [...] Read more.
Brassinosteroids (BRs) are steroid hormones that are essential for plant growth, development, and environmental adaptation. They control the division, elongation, and differentiation of various cell types throughout the entire plant life cycle, affecting growth and the stress response. Therefore, fine-tuning of BR biosynthesis and modulation of signaling pathways offer possibilities for developing cultivars characterized by adjusted plant architecture or improved stress tolerance to benefit crop production. Additionally, precise BR treatments can be employed to increase the productivity of crop plants. This review aims to provide a comprehensive summary of the genetic basis of traits related to BR metabolism and signaling in cucurbits, the second largest vegetable family, which contributes significantly to global vegetable production and nutritional security. We summarize the current knowledge concerning BR biosynthesis mutants, the role of BRs in stress mitigation, and the potential of the exogenous application of BRs to alleviate stress during cucurbit production. We also discuss how genes related to BR metabolism can be used to develop gene editing strategies to advance precision breeding in cucurbits. Full article
(This article belongs to the Special Issue Vegetable Genetics and Genomics, 3rd Edition)
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19 pages, 1388 KiB  
Article
Lipid Oxidation of Stored Brown Rice Changes Ileum Digestive and Metabolic Characteristics of Broiler Chickens
by Beibei He, Xueyi Zhang, Weiwei Wang, Li Wang, Jingjing Shi, Kuanbo Liu, Junlin Cheng, Yongwei Wang and Aike Li
Int. J. Mol. Sci. 2025, 26(14), 7025; https://doi.org/10.3390/ijms26147025 - 21 Jul 2025
Viewed by 257
Abstract
Long-term storage may induce lipid oxidation in brown rice and impact its utilization in animal diets. One-day-old male Ross 308 broiler chickens (with an initial body weight of 20 g) were randomly divided into three groups: corn-based diet (Corn), fresh brown rice-based diet [...] Read more.
Long-term storage may induce lipid oxidation in brown rice and impact its utilization in animal diets. One-day-old male Ross 308 broiler chickens (with an initial body weight of 20 g) were randomly divided into three groups: corn-based diet (Corn), fresh brown rice-based diet (BR1) and stored brown rice-based diet (BR6), with 8 replicates of 10 birds per pen, in a 42-day feeding trial. The results showed that lipid oxidation indexes increased and fatty acid composition changed significantly in BR6 (p < 0.05). The dietary replacement of corn with brown rice showed no effects on growth performance of broilers (p > 0.05). However, palmitic acid and oleic acid increased, and stearic acid, linoleic acid and docosadienoic acid decreased in the broiler breast muscle of the BR1 and BR6 groups (p < 0.05). Ileum antioxidant enzyme activities increased in the BR1 and BR6 groups compared to the Corn group (p < 0.05), and the activities of α-amylase, trypsin, chymotrypsin and lipase decreased in the BR6 group compared to the BR1 and Corn groups (p < 0.05). Also, compared to the BR1 group, the overall expression of metabolites involved in drug metabolism—cytochrome P450, GnRH secretion and the estrogen signaling pathway in broiler ileum were down-regulated in the BR6 group (p < 0.05). In conclusion, the lipid oxidation of stored brown rice decreased digestive enzyme activities and changed metabolic characteristics in the ileum of broilers. While replacing corn with brown rice did not affect broiler growth performance, it reduced the contents of unsaturated and essential fatty acids in breast muscle and enhanced the ileal antioxidant functions of broilers. Full article
(This article belongs to the Section Molecular Endocrinology and Metabolism)
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19 pages, 17948 KiB  
Article
Temporal Transcriptome Analysis Reveals Core Pathways and Orphan Gene EARLY FLOWERING 1 Regulating Floral Transition in Chinese Cabbage
by Hong Lang, Yuting Zhang, Shouhe Zhao, Kexin Li, Xiaonan Li and Mingliang Jiang
Plants 2025, 14(14), 2236; https://doi.org/10.3390/plants14142236 - 19 Jul 2025
Viewed by 312
Abstract
The floral transition in Chinese cabbage (Brassica rapa ssp. pekinensis) is governed by a complex interplay of gene expression and hormonal regulation. Temporal transcriptome profiling was conducted across three developmental stages: pre-bolting (PBS), bolting (BS), and flowering stages (FS), to investigate [...] Read more.
The floral transition in Chinese cabbage (Brassica rapa ssp. pekinensis) is governed by a complex interplay of gene expression and hormonal regulation. Temporal transcriptome profiling was conducted across three developmental stages: pre-bolting (PBS), bolting (BS), and flowering stages (FS), to investigate the underlying molecular mechanisms. A total of 7092 differentially expressed genes (DEGs) were identified, exhibiting distinct expression trajectories during the transition. Moreover, functional enrichment analyses revealed strong associations with plant hormone signaling, MAPK pathways, and developmental regulation processes. Key flowering-related genes, such as BrFLM, BrAP2, BrFD, BrFT, and BrSOC1s displayed antagonistic expression patterns. Hormonal pathways involving auxin, ABA, ET, BR, GA, JA, CK, and SA showed stage-dependent modulation. Further, orphan genes (OGs), especially EARLY FLOWERING 1 (EF1), showed significant upregulation during the transition, which exhibited 1.84-fold and 1.93-fold increases at BS and FS compared to PBS, respectively (p < 0.05). Functional validation through EF1 overexpression (EF1OE) in Arabidopsis consistently promoted early flowering. The expression levels of AtFT and AtSOC1 were significantly upregulated in EF1OE lines compared to wild-type (WT) plants. The findings contribute to understanding the coordinated genetic and hormonal events driving floral development in Chinese cabbage, suggesting EF1 as a candidate for bolting resistance breeding. This work also expands the existing regulatory framework through the successful integration of OGs into the complex floral induction system of Brassica crops. Full article
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16 pages, 4288 KiB  
Article
Functional Role of Resveratrol in Inducing Apoptosis in Breast Cancer Subtypes via Inhibition of Intracellular Fatty Acid Synthase
by Ping Li, Yan Liang and Xiaofeng Ma
Molecules 2025, 30(14), 2891; https://doi.org/10.3390/molecules30142891 - 8 Jul 2025
Viewed by 395
Abstract
Fatty acid synthase (FASN) is frequently overexpressed in human breast cancer and has emerged as a potential therapeutic target. Resveratrol has been shown to inhibit FASN activity in vitro through both fast-reversible and slow-irreversible mechanisms. In this study, resveratrol reduced intracellular fatty acid [...] Read more.
Fatty acid synthase (FASN) is frequently overexpressed in human breast cancer and has emerged as a potential therapeutic target. Resveratrol has been shown to inhibit FASN activity in vitro through both fast-reversible and slow-irreversible mechanisms. In this study, resveratrol reduced intracellular fatty acid levels by inhibiting FASN activity and downregulating its expression across various breast cancer subtypes, including SK-BR-3, MCF-7, and MDA-MB-231 cells. Knockdown of FASN via small interfering RNA (siRNA) further enhanced resveratrol-induced cytotoxicity. Resveratrol significantly suppressed cell viability and triggered apoptosis, as evidenced by increased cleavage of poly(ADP-ribose) polymerase (PARP) and disruption of Bcl-2 family protein balance. Furthermore, resveratrol inhibited key signaling pathways involved in cell proliferation and survival, notably FAK, AKT, and ERK1/2. FASN silencing by siRNA also modulated the activation states of these signaling proteins. Collectively, these findings support resveratrol as a promising anti-cancer candidate that induces apoptosis in diverse breast cancer subtypes via FASN inhibition. Full article
(This article belongs to the Special Issue Chemical and Biological Research on Bioactive Natural Products)
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15 pages, 3212 KiB  
Article
Phytotoxic Effects of Bisphenol A on Growth and Physiology of Capsicum annuum L.
by Zilin Zhang, Rong Lu, Longxue Li, Yishui Chen, Jin Lan, Rongrong Chen, Yong Zhou and Huibin Han
Horticulturae 2025, 11(7), 788; https://doi.org/10.3390/horticulturae11070788 - 3 Jul 2025
Viewed by 382
Abstract
Bisphenol A (BPA) is a widely used chemical to produce raw materials in plastic production, which has led to its ubiquity in the natural environment and toxicity to both plants and humans. In this study, we evaluated the phytotoxic effects of BPA on [...] Read more.
Bisphenol A (BPA) is a widely used chemical to produce raw materials in plastic production, which has led to its ubiquity in the natural environment and toxicity to both plants and humans. In this study, we evaluated the phytotoxic effects of BPA on the growth and physiology of pepper (Capsicum annuum L.), a globally cultivated horticultural plant. Our high-performance liquid chromatography (HPLC) result revealed that 0.5 mg/kg of BPA treatment did not lead to the accumulation of BPA in the leaves and fruits of pepper plants. The exogenous application of 5 mg/kg of BPA prominently inhibited pepper growth, while 0.5 mg/kg of BPA had no obvious effects on pepper growth. Additionally, our transcriptomic assay revealed that BPA-regulated gene expression is associated with photosynthesis and reactive oxygen species (ROS) signaling. Physiological and qRT-PCR assays further demonstrated that BPA reduced chlorophyll content and increased ROS levels by regulating the expression of genes related to chlorophyll synthesis and ROS production. Our transcriptomic data also elucidated the potential role of plant hormones, including brassinolides (BR), salicylic acid (SA), jasmonic acid (JA), and strigolactone (SL) in mediating BPA-induced phytotoxicity. Furthermore, BPA activated the N6-methyladenosine (m6A) modification to exert its toxicity. Collectively, our findings offer additional insights into the mechanisms through which BPA attenuates pepper plant growth, which might contribute new knowledge toward a better scientific assessment of BPA exposure risks in horticultural species. Full article
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24 pages, 3837 KiB  
Article
The Alleviating Effect of Brassinosteroids on Cadmium Stress in Potato Plants: Insights from StDWF4 Gene Overexpression
by Xiangyan Zhou, Rong Miao, Jiaqi Luo, Wenhui Tang, Kexin Liu, Caijuan Li and Dan Zhang
Agronomy 2025, 15(7), 1503; https://doi.org/10.3390/agronomy15071503 - 20 Jun 2025
Viewed by 485
Abstract
The potato is the fourth largest cultivated crop worldwide. Soil cadmium (Cd) pollution poses a significant threat to crop growth. Brassinosteroids (BRs) play a significant part in enhancing plant resistance against abiotic stresses. The DWF4 (dwarf4) gene is one of the rate-limiting enzyme [...] Read more.
The potato is the fourth largest cultivated crop worldwide. Soil cadmium (Cd) pollution poses a significant threat to crop growth. Brassinosteroids (BRs) play a significant part in enhancing plant resistance against abiotic stresses. The DWF4 (dwarf4) gene is one of the rate-limiting enzyme genes involved in the synthesis of BRs. This study employed seedlings of transgenic potatoes overexpressing the StDWF4 gene (OE) and wild-type (WT) potatoes to clarify their alleviating effect on Cd stresses. The differences in phenotype, ultrastructure, physiological indicators, and plant hormone levels of Cd2+-treated potatoes were analyzed. The molecular mechanism of potatoes’ response to Cd2+ stress was revealed by transcriptomics. Results showed that the dry weight, fresh weight, plant height, root length, and stem diameter of OE potatoes under Cd stress were significantly higher than those of WT potatoes. Ultrastructural analysis revealed that the mitochondria, cell walls, and cell membranes of WT were more fragile than those of OE under Cd stress. The Cd2+ concentration in OE was always lower than that in WT, and both concentrations increased gradually as the duration of Cd2+ treatment was prolonged. The 24-epibrassionlide (EBL) content in OE was higher than that in WT. RNA-seq analysis manifested that the gene expression levels of OE and WT plants changed significantly under Cd2+ treatment. The differentially expressed genes (DEGs) were primarily connected to the moderation of the metabolic pathways, biosynthesis of secondary metabolites, phenylpropanoid biosynthesis, and plant hormone signal transduction. These findings indicated that overexpression of the StDWF4 gene in potatoes enhanced their alleviating effect on Cd stresses. Full article
(This article belongs to the Section Plant-Crop Biology and Biochemistry)
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19 pages, 5293 KiB  
Article
Root Ethylene and Abscisic Acid Responses to Flooding Stress in Styrax japonicus: A Transcriptomic Perspective
by Chao Han, Jinghan Dong, Gaoyuan Zhang, Qinglin Zhu and Fangyuan Yu
Plants 2025, 14(12), 1870; https://doi.org/10.3390/plants14121870 - 18 Jun 2025
Viewed by 434
Abstract
Global climate change has led to an increased frequency of extreme weather events, with flooding caused by heavy rainfall posing a significant threat to plant growth and survival. Styrax japonicus, a species of ecological and economic importance, exhibits stronger flooding tolerance compared [...] Read more.
Global climate change has led to an increased frequency of extreme weather events, with flooding caused by heavy rainfall posing a significant threat to plant growth and survival. Styrax japonicus, a species of ecological and economic importance, exhibits stronger flooding tolerance compared to its congener Styrax tonkinensis. Endogenous hormonal systems in plants are indispensable for integrating growth dynamics, developmental transitions, and ecological stress perception-transduction pathways. To investigate the response of S. japonicus to flooding stress at both hormonal and molecular levels, this study utilized annual seedlings of S. japonicus as experimental material. Two levels of flooding stress, waterlogging and submergence, were applied to examine the variations in endogenous hormone levels in S. japonicus roots under different stress conditions and durations. Combined with transcriptome sequencing, critical genes associated with hormone-mediated signaling and biosynthetic processes were identified. The results showed that the content of the ethylene precursor ACC exhibited a trend of “increase–decrease–increase”, with an earlier decline under submergence compared to waterlogging stress by approximately 10 days. Abscisic acid content sharply decreased at 5 d, followed by an initial increase and subsequent decrease, with higher ABA levels observed under waterlogging stress than under submergence. GA content significantly decreased after 10 d in both stress conditions. KEGG enrichment analysis revealed that the most prominently enriched pathway for DEGs was plant hormone signal transduction under both waterlogging and submergence stress, with 314 and 370 DEGs identified, respectively. Analysis of common genes indicated their association with ethylene, ABA, auxin, and BRs. After further investigation of DEGs in the ethylene and ABA biosynthesis process, we identified key enzyme genes encoding ACS, ACO, and NCED, which are critical for their biosynthesis. Full article
(This article belongs to the Section Plant Molecular Biology)
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14 pages, 812 KiB  
Review
Brassinosteroids: Biosynthesis, Signaling, and Hormonal Crosstalk as Related to Fruit Yield and Quality
by Divya Aryal and Fernando Alferez
Plants 2025, 14(12), 1865; https://doi.org/10.3390/plants14121865 - 18 Jun 2025
Cited by 1 | Viewed by 713
Abstract
Brassinosteroids (BRs) are plant growth regulators (PGRs) with pleiotropic effects on plant growth and development. They play a role in seed germination, vegetative and reproductive growth, photosynthetic efficiency, vascular differentiation, fruit yield, quality, and resilience to biotic and abiotic stresses. They engage in [...] Read more.
Brassinosteroids (BRs) are plant growth regulators (PGRs) with pleiotropic effects on plant growth and development. They play a role in seed germination, vegetative and reproductive growth, photosynthetic efficiency, vascular differentiation, fruit yield, quality, and resilience to biotic and abiotic stresses. They engage in crosstalk with other hormones like auxin, gibberellins, ethylene and abscisic acid, influencing all plant growth and development aspects. Studies on the effect of BRs on the reproductive growth of fruit crops are accumulating, given the potential of this PGR as a management tool in agriculture. This review explores the multifaceted roles of BRs in fruit crop maturation. From their biosynthesis and signal transduction pathways to their influence on fruit production, development, and maturation, we focus on the effect of this plant hormone on different aspects of fruit yield and quality, including fruit set and firmness, sugar accumulation, and fruit development. We address BRs’ interaction with different hormones at molecular and physiological levels in regulating these processes in climacteric and non-climacteric fruits. We also identify areas where knowledge is still lacking regarding hormonal crosstalk involving BRs in the regulation of developmental processes governing fruit quality and yield so knowledge generated can inform management decisions in fruit crop production. Full article
(This article belongs to the Section Crop Physiology and Crop Production)
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19 pages, 4694 KiB  
Article
Effects of Different Modified Biochars on Growth of Kosteletzkya virginica and Corresponding Transcriptome Analysis
by Hao Dai, Mingyun Jia, Jianhui Xue, Yuying Huang and Jinping Yu
Plants 2025, 14(12), 1849; https://doi.org/10.3390/plants14121849 - 16 Jun 2025
Viewed by 491
Abstract
Modified biochar can effectively improve the quality and environment of coastal saline–alkali soil, but its effects on the growth and development of halophytes and its mechanism are still unclear. This study systematically evaluated the growth-promoting effects and preliminary mechanisms of H3PO [...] Read more.
Modified biochar can effectively improve the quality and environment of coastal saline–alkali soil, but its effects on the growth and development of halophytes and its mechanism are still unclear. This study systematically evaluated the growth-promoting effects and preliminary mechanisms of H3PO4-modified biochar (HBC) and H3PO4–kaolinite–biochar composite (HBCK) on the economically important halophyte Kosteletzkya virginica. The results demonstrated that the application of HBC/HBCK significantly enhanced plant growth, resulting in increases of over 55% in plant height and greater than 100% in biomass relative to the control. Multidimensional mechanistic analysis revealed the following: (1) accumulation of nitrogen (N), phosphorus (P), and potassium (K) increased by at least 40%, significantly enhancing nutrient uptake; (2) increases in the activities of superoxide dismutase (SOD) and peroxidase (POD) by over 100% and 70%, respectively, markedly boosting antioxidant capacity and effectively alleviating oxidative stress; (3) molecular regulation via the activation of transcription factor networks (HSP, MYB, TCP, AP2/ERF, bZIP, and NLP) and modulation of key genes in ABA, BR, and JA signaling pathways (CYP707A, CYP90, and OPR2), establishing a multi-layered stress adaptation and growth promotion system. Beyond assessing the growth-promoting effects of modified biochars, this study provides novel insights into the regulatory transcription factor networks and phytohormone signaling pathways, offering theoretical foundations for the molecular design of biochars for saline–alkali soil remediation. Full article
(This article belongs to the Section Plant Ecology)
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14 pages, 2631 KiB  
Article
The Auxin Response Factor OsARF25 Negatively Regulates Grain Size and Weight in Rice (Oryza sativa L.) by Activating the Expression of SG1 and OsOFP04
by Xinrong Zhang, Yimeng Xu, Fengjun Xian, Shuya Liu, Jishuai Huang, Bin Xie and Jun Hu
Plants 2025, 14(12), 1808; https://doi.org/10.3390/plants14121808 - 12 Jun 2025
Viewed by 877
Abstract
Grain size and grain weight are critical factors influencing crop yield. In rice (Oryza sativa L.), the auxin response factor (OsARF) family proteins, key components of the auxin signaling pathway, function as transcription factors and play essential roles in regulating various plant [...] Read more.
Grain size and grain weight are critical factors influencing crop yield. In rice (Oryza sativa L.), the auxin response factor (OsARF) family proteins, key components of the auxin signaling pathway, function as transcription factors and play essential roles in regulating various plant growth and development processes, including seed development. Here, we identified that Oryza sativa AUXIN RESPONSE FACTOR 25 (OsARF25) plays an essential role in regulating grain size and grain weight by activating the expression of SHORT GRAIN 1 (SG1) and Oryza sativa OVATE FAMILY PROTEIN 04 (OsOFP04). The osarf25 mutants showed larger grains with increased grain length, grain width, and 1000-grain weight. Furthermore, molecular evidence demonstrated that OsARF25 functions as a transcriptional activator. RNA-seq analysis further identified its target genes SG1 and OsOFP04. In addition, OsARF25 directly binds to the promoters of SG1 and OsOFP04 and activates their expression. Further, the osarf25 mutant exhibited enhanced sensitivity to brassinolide treatment, confirming that the targeting of SG1 and OsOFP04 by OsARF25 mediates BR signaling. Taken together, our study revealed that OsARF25 functions as a regulator of grain length, grain width, and grain weight by participating in the BR signaling pathway, and it has potential value for molecular breeding in rice. Full article
(This article belongs to the Special Issue Research on Plant Genomics and Breeding 2025)
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22 pages, 4603 KiB  
Article
Root Transcriptome Analysis Identifies Salt-Tolerance Genes in Sweet Corn Chromosome Segment Substitution Lines (CSSLs)
by Zili Zhang, Xuxuan Duan, Pengfei Liu, Qingchun Chen, Wei Sun, Xiaorong Wan, Yixiong Zheng, Jianting Lin, Feng Jiang and Faqiang Feng
Plants 2025, 14(11), 1687; https://doi.org/10.3390/plants14111687 - 31 May 2025
Viewed by 705
Abstract
Salt stress severely constrains global crop productivity. However, most sweet corn cultivars exhibit weak tolerance to salt stress. In this study, two sweet corn CSSLs, salt-tolerant line D55 and salt-sensitive line D96, were selected as materials. We conducted comparative phenotyping and physiological profiling [...] Read more.
Salt stress severely constrains global crop productivity. However, most sweet corn cultivars exhibit weak tolerance to salt stress. In this study, two sweet corn CSSLs, salt-tolerant line D55 and salt-sensitive line D96, were selected as materials. We conducted comparative phenotyping and physiological profiling of seedlings under salinity treatment, and transcriptome analysis was carried out by sampling root tissues at 0 h, 4 h, 12 h, and 72 h post-treatment. The results indicated that D55 exhibited enhanced seedling height, root length, fresh weight, relative chlorophyll content, and antioxidant enzyme activities, while showing reduced malondialdehyde accumulation in comparison to D96. Pairwise comparisons across time points (0 h, 4 h, 12 h, 72 h) identified 6317 and 6828 differentially expressed genes (DEGs) in D55 and D96. A total of 49 shared DEGs across four time points were identified in D55 and D96, which were enriched in 12 significant Gene Ontology (GO) terms. Only eight DEGs were shared between genotypes across all comparisons. Transcriptomic analysis revealed 1281, 1946, and 1717 DEGs in genotypes D55 and D96 at 4 h, 12 h, and 72 h post-salt treatment, respectively. Genes associated with reactive oxygen species (ROS) homeostasis, phenylpropanoid metabolism, cutin, suberin and wax biosynthesis, and benzoxazinoid synthesis exhibit enhanced sensitivity in the salt-tolerant genotype D55. This leads to an enhanced ROS scavenging capacity and the establishment of a multi-layered defense mechanism. Additionally, brassinosteroid (BR), gibberellin (GA), and abscisic acid (ABA) and auxin-related genes exhibited different responses to salt stress in sweet corn. A hypothetical model, which established a multi-layered salt adaptation strategy, by integrating ROS detoxification, osmotic balance, and phytohormone signaling, was put forward. By integrating transcriptome and differential chromosomal fragment data, our findings identify 14 candidate genes for salt tolerance, providing potential ideal target genes in breeding to improve salt tolerance in sweet corn. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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21 pages, 6476 KiB  
Article
Elucidating the Molecular Mechanisms of Physiological Fruit Abscission in Actinidia arguta Through Comparative Transcriptomics and Transient Genetic Transformation
by Pengqiang Yuan, Yanli Wang, Yining Sun, Guoliang Liu, Hongyan Qin, Shutian Fan, Yiping Yan, Bowei Sun and Wenpeng Lu
Plants 2025, 14(11), 1645; https://doi.org/10.3390/plants14111645 - 28 May 2025
Viewed by 465
Abstract
Actinidia arguta (A. arguta) is valued for its nutritional richness, but physiological fruit abscission severely limits production efficiency in elite cultivars. To unravel the molecular basis of this process, we compared two cultivars: abscission-prone ‘KL’ and abscission-resistant ‘JL’. During fruit development, [...] Read more.
Actinidia arguta (A. arguta) is valued for its nutritional richness, but physiological fruit abscission severely limits production efficiency in elite cultivars. To unravel the molecular basis of this process, we compared two cultivars: abscission-prone ‘KL’ and abscission-resistant ‘JL’. During fruit development, ‘KL’ exhibited an earlier decline in auxin (AUX) levels within the fruit abscission zone (FAZ), coupled with persistently higher ethylene (ETH) concentrations and polygalacturonase (PG) activity compared to ‘JL’. Comparative transcriptomics identified abscission-related genes enriched in plant hormone signaling (AUX, ETH, ABA, JA, BR), starch/sucrose metabolism, and photosynthesis pathways. AUX signaling diverged predominantly during early development, while ETH, BR, and JA pathways varied across multiple stages. Exogenous applications of plant growth regulators (ethephon, 2,4-D, methyl jasmonate, and 2,4-epibrassinolide) and transient overexpression of key genes (AaETR1, AaERF035, AaPME68, AaPP2C27, AaMYC1, and AaPMEI10) validated their roles in modulating hormone crosstalk and cell wall remodeling. Overexpression of AaERF035 and AaPME68 likely accelerated abscission by enhancing ETH biosynthesis and pectin degradation, while AaPMEI10 and AaMYC1 potentially delayed abscission via suppression of cell wall-modifying enzymes. This study elucidates the hormonal and transcriptional networks governing fruit abscission in A. arguta, providing insights for targeted breeding and cultivation strategies to mitigate yield loss. Full article
(This article belongs to the Section Plant Development and Morphogenesis)
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27 pages, 4117 KiB  
Article
Integrated Analyses Reveal the Physiological and Molecular Mechanisms of Brassinolide in Modulating Salt Tolerance in Rice
by Jia-Shuang Wu, De-Wei Mu, Nai-Jie Feng, Dian-Feng Zheng, Zhi-Yuan Sun, Aaqil Khan, Hang Zhou, Yi-Wen Song, Jia-Xin Liu and Jia-Qi Luo
Plants 2025, 14(10), 1555; https://doi.org/10.3390/plants14101555 - 21 May 2025
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Abstract
Salt stress poses a significant threat to crop growth. While brassinolide (BR) has been shown to alleviate its adverse effects and modulate plant development, the precise mechanism underlying BR-induced salt tolerance in rice remains unclear. In this study, the Chaoyouqianhao and Huanghuazhan rice [...] Read more.
Salt stress poses a significant threat to crop growth. While brassinolide (BR) has been shown to alleviate its adverse effects and modulate plant development, the precise mechanism underlying BR-induced salt tolerance in rice remains unclear. In this study, the Chaoyouqianhao and Huanghuazhan rice varieties were employed to investigate the effects of BR seed soaking on the seedling phenotype, physiology, transcriptome, and metabolome under salt stress. The results demonstrated that BR treatment significantly enhanced rice plant height, root length, biomass, and antioxidant enzyme activities, while reducing leaf membrane damage, promoting ion homeostasis, and improving the photosynthetic capacity and salt tolerance. The transcriptome analysis revealed that BR regulated the expression of 1042 and 826 genes linked to antioxidant activity, ion homeostasis, photosynthesis, and lipid metabolism under salt stress. These included genes involved in Na+ efflux (OsNCED2, OsHKT2;1, and OsHKT1;1), photosynthetic electron transport (OsFd5 and OsFdC1), photosystem II (OsPsbR1, OsPsbR2, and OsPsbP), and CO2 fixation. The metabolomic analysis identified 91 and 57 metabolite alterations induced by BR, primarily linked to amino acid, flavonoid, and lipid metabolism, with notable increases in antioxidant metabolites such as lignanoside, isorhamnetin, and L-glutamic acid. The integrated analysis highlighted the pivotal roles of 12-OPDA in α-linolenic acid metabolism and genes related to lipid metabolism, JA metabolism, and JA signal transduction in BR-mediated salt tolerance. Full article
(This article belongs to the Section Plant Physiology and Metabolism)
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