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Search Results (26)

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Authors = Abdullah Al-Doss ORCID = 0000-0003-3828-2384

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30 pages, 3394 KiB  
Article
Integrating Hyperspectral Reflectance-Based Phenotyping and SSR Marker-Based Genotyping for Assessing the Salt Tolerance of Wheat Genotypes under Real Field Conditions
by Salah El-Hendawy, Muhammad Bilawal Junaid, Nasser Al-Suhaibani, Ibrahim Al-Ashkar and Abdullah Al-Doss
Plants 2024, 13(18), 2610; https://doi.org/10.3390/plants13182610 - 19 Sep 2024
Cited by 1 | Viewed by 1273
Abstract
Wheat breeding programs are currently focusing on using non-destructive and cost-effective hyperspectral sensing tools to expeditiously and accurately phenotype large collections of genotypes. This approach is expected to accelerate the development of the abiotic stress tolerance of genotypes in breeding programs. This study [...] Read more.
Wheat breeding programs are currently focusing on using non-destructive and cost-effective hyperspectral sensing tools to expeditiously and accurately phenotype large collections of genotypes. This approach is expected to accelerate the development of the abiotic stress tolerance of genotypes in breeding programs. This study aimed to assess salt tolerance in wheat genotypes using non-destructive canopy spectral reflectance measurements as an alternative to direct laborious and time-consuming phenological selection criteria. Eight wheat genotypes and sixteen F8 RILs were tested under 150 mM NaCl in real field conditions for two years. Fourteen spectral reflectance indices (SRIs) were calculated from the spectral data, including vegetation SRIs and water SRIs. The effectiveness of these indices in assessing salt tolerance was compared with four morpho-physiological traits using genetic parameters, SSR markers, the Mantel test, hierarchical clustering heatmaps, stepwise multiple linear regression, and principal component analysis (PCA). The results showed significant differences (p ≤ 0.001) among RILs/cultivars for both traits and SRIs. The heritability, genetic gain, and genotypic and phenotypic coefficients of variability for most SRIs were comparable to those of measured traits. The SRIs effectively differentiated between salt-tolerant and sensitive genotypes and exhibited strong correlations with SSR markers (R2 = 0.56–0.89), similar to the measured traits and allelic data of 34 SSRs. A strong correlation (r = 0.27, p < 0.0001) was found between the similarity coefficients of SRIs and SSR data, which was higher than that between measured traits and SSR data (r = 0.20, p < 0.0003) based on the Mantel test. The PCA indicated that all vegetation SRIs and most water SRIs were grouped with measured traits in a positive direction and effectively identified the salt-tolerant RILs/cultivars. The PLSR models, which were based on all SRIs, accurately and robustly estimated the various morpho-physiological traits compared to using individual SRIs. The study suggests that various SRIs can be integrated with PLSR in wheat breeding programs as a cost-effective and non-destructive tool for phenotyping and screening large wheat populations for salt tolerance in a short time frame. This approach can replace the need for traditional morpho-physiological traits and accelerate the development of salt-tolerant wheat genotypes. Full article
(This article belongs to the Section Crop Physiology and Crop Production)
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23 pages, 1408 KiB  
Article
Assessing Heat Stress Tolerance of Wheat Genotypes through Integrated Molecular and Physio-Biochemical Analyses
by Mohammed Sallam, Ibrahim Al-Ashkar, Abdullah Al-Doss, Khalid A. Al-Gaadi, Ahmed M. Zeyada and Abdelhalim Ghazy
Agronomy 2024, 14(9), 1999; https://doi.org/10.3390/agronomy14091999 - 2 Sep 2024
Cited by 2 | Viewed by 1691
Abstract
Heat as an abiotic stress significantly impairs the sustainable productivity of wheat (Triticum aestivum L.). To determine the tolerance of genotypes to heat stress, a comprehensive approach should be used that integrates simultaneous phenotyping and genotyping analyses. The aim of this study [...] Read more.
Heat as an abiotic stress significantly impairs the sustainable productivity of wheat (Triticum aestivum L.). To determine the tolerance of genotypes to heat stress, a comprehensive approach should be used that integrates simultaneous phenotyping and genotyping analyses. The aim of this study is to identify local heat-tolerant genotypes using simple sequence repeat (SSR) markers and evaluate the selected genotypes under field conditions for their tolerance to heat stress. Of the 12 SSR markers that showed polymorphism, eight were associated with six important traits. The use of hierarchical cluster analysis (HC) based on SSR markers led to the identification of 13 genotypes that showed varying results and were grouped into three distinct heat tolerance classes: tolerant (T), moderately tolerant (MT), and sensitive (S). The results showed that heat stress had a significant effect on 19 traits under this study, with significant variation in tolerance to heat stress between genotypes. The tolerant genotypes exhibited a range of average thousand-kernel weight (TKW) values between 40.56 and 44.85, while the sensitive genotype (Yecora Rojo) had an average TKW of 35.45. Furthermore, the tolerant genotypes showed two to three times higher levels of antioxidants compared to the sensitive genotypes when exposed to heat stress. Among the traits analyzed, six showed a favorable combination of high heritability (>60%) and genetic gain (>20%). Through the integration of principal component analysis and stepwise multiple linear regression, it was determined that six traits (grain yield, 1000-kernel weight, plant height, intercellular carbon dioxide, flag leaf area, and grain filling duration) revealed differences between the 13 genotypes. HC analysis of the six traits resulted in the same division of genotypes into three main categories as observed in an HC analysis based on SSR markers. It is worth noting that Saudi wheat, including KSU106, KSU105, and KSU115 as local genotypes, in addition to the 16HTWYT-22 genotype, showed higher heat tolerance compared to the other genotypes tested, indicating its potential suitability for agriculture in Saudi Arabia. These results contribute to breeding programs focused on developing heat-tolerant wheat varieties and accelerate progress in wheat productivity improvement programs. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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18 pages, 3142 KiB  
Article
Characterization of Improved Barley Germplasm under Desert Environments Using Agro-Morphological and SSR Markers
by Abdelhalim I. Ghazy, Mohamed A. Ali, Eid I. Ibrahim, Mohammed Sallam, Talal K. Al Ateeq, Ibrahim Al-Ashkar, Mohamed I. Motawei, Hussein Abdel-Haleem and Abdullah A. Al-Doss
Agronomy 2024, 14(8), 1716; https://doi.org/10.3390/agronomy14081716 - 4 Aug 2024
Cited by 4 | Viewed by 2276
Abstract
Barley is indeed a versatile cereal crop, valued for its uses in food, animal feed, and increasingly in biofuel production. As interest grows in developing new barley genotypes that are better adapted to diverse environmental conditions and production systems, integrating agro-morphological evaluations with [...] Read more.
Barley is indeed a versatile cereal crop, valued for its uses in food, animal feed, and increasingly in biofuel production. As interest grows in developing new barley genotypes that are better adapted to diverse environmental conditions and production systems, integrating agro-morphological evaluations with molecular marker analyses in barley breeding programs is essential for developing new genotypes. It is necessary to explore the genetic diversity of those germplasm to predicate their responses to targeted environments and regions. The current study explored the phenotypic and genotypic relations among Saudi advanced germplasm to facilitate the development of superior barley cultivars suitable for desert environments. Molecular microsatellites (SSR) markers revealed considerable wide genetic variation among Saudi germplasm and checks. Population structure analyses revealed four main groups. Those groups were validated using similarity analyses and coefficients. As well, principal components analysis (PCA) and heat map analyses separated the studied genotypes into four main groups. The improved Saudi germplasm, selected from the barley breeding program, revealed considerably wide genetic and phenotypic diversities, indicating the feasibility of selection to improve for semi-arid conditions. The improved line KSU-BR-C/G-2 had the highest grain yield and harvest index in the first season. Rihana/Lignee was followed by the KSU-BR-C/G-2 genotype, with a grain yield averaging 6734.07 (kg ha−1), in the first season. KSU-BR-88-29-10 yielded 20,000 kg ha−1 for biomass yield. In the second year, KSU-BR-30-7 had the highest biomass yield, with 27,037.04 kg ha−1. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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22 pages, 2894 KiB  
Article
Micropropagation and Genetic Fidelity of Fegra Fig (Ficus palmata Forssk.) and Grafting Compatibility of the Regenerated Plants with Ficus carica
by Ahmed Ali Al-Aizari, Yaser Hassan Dewir, Abdel-Halim Ghazy, Abdullah Al-Doss and Rashid Sultan Al-Obeed
Plants 2024, 13(9), 1278; https://doi.org/10.3390/plants13091278 - 6 May 2024
Cited by 6 | Viewed by 2796
Abstract
Ficus palmata is an important fig species that produces edible and nutritious fruit and possesses several therapeutic uses. This study reports an effective method for the micropropagation of F. palmata using nodal explants. In vitro shoots were cultured for 7 weeks onto MS [...] Read more.
Ficus palmata is an important fig species that produces edible and nutritious fruit and possesses several therapeutic uses. This study reports an effective method for the micropropagation of F. palmata using nodal explants. In vitro shoots were cultured for 7 weeks onto MS medium fortified with different concentrations of cytokinins, light intensities, sucrose concentrations, and light/dark incubation treatments. Optimal axillary shoot proliferation (10.9 shoots per explant) was obtained on a medium containing 30 g/L sucrose and supplemented with 2 mg/L 6-benzylaminopurine (BAP) under 35 μmol/m2/s light intensity. Dark incubation limited the foliage growth but favored shoot elongation and rooting compared with light incubation. Elongated shoots, under dark conditions, were rooted (100%; 6.67 roots per explant) onto MS medium containing 1 mg/L indole-3-acetic acid (IAA) and 1.5 g/L activated charcoal. The micropropagated plantlets were acclimatized with a 95% survival rate. In this study, the genetic fidelity of micropropagated F. palmata clones along with their mother plant was tested using randomly amplified polymorphic DNA (RAPD), inter-simple sequence repeats (ISSR), and start codon targeted (SCoT) molecular markers. The genetic similarity between the micropropagated plantlets and the mother plant of F. palmata was nearly 95.9%, assuring high uniformity and true-to-type regenerated plants. Using micropropagated F. palmata plantlets as a rootstock proved appropriate for the grafting F. carica ‘Brown Turkey’. These findings contribute to the commercial propagation and production of the fig crop. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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16 pages, 3386 KiB  
Article
Ectopic Expression of a Wheat R2R3-Type MYB Gene in Transgenic Tobacco Enhances Osmotic Stress Tolerance via Maintaining ROS Balance and Improving Root System Architecture
by Omar Azab, Walid Ben Romdhane, Salah El-Hendawy, Abdelhalim Ghazy, Adel M. Zakri, Ahmed M. Abd-ElGawad and Abdullah Al-Doss
Biology 2024, 13(2), 128; https://doi.org/10.3390/biology13020128 - 18 Feb 2024
Cited by 1 | Viewed by 2012
Abstract
Water scarcity is a critical cause of plant yield loss and decreased quality. Manipulation of root system architecture to minimize the impact of water scarcity stresses may greatly contribute towards an improved distribution of roots in the soil and enhanced water and nutrient [...] Read more.
Water scarcity is a critical cause of plant yield loss and decreased quality. Manipulation of root system architecture to minimize the impact of water scarcity stresses may greatly contribute towards an improved distribution of roots in the soil and enhanced water and nutrient uptake abilities. In this study, we explored the potential of TaMYB20 gene, a wheat gene belonging to the R2R3-MYB transcription factor family, to improve root system architecture in transgenic tobacco plants. The full-length TaMYB20 gene was isolated from Triticum aestivum.cv. Sakha94 and used to produce genetically engineered tobacco plants. The transgenic plants exhibited enhanced tolerance to extended osmotic stress and were able to maintain their root system architecture traits, including total root length (TRL), lateral root number (LRN), root surface area (RSa), and root volume (RV), while the wild-type plants failed to maintain the same traits. The transgenic lines presented greater relative water content in their roots associated with decreased ion leakage. The oxidative stress resulted in the loss of mitochondrial membrane integrity in the wild-type (WT) plants due to the overproduction of reactive oxygen species (ROS) in the root cells, while the transgenic lines were able to scavenge the excess ROS under stressful conditions through the activation of the redox system. Finally, we found that the steady-state levels of three PIN gene transcripts were greater in the TaMYB20-transgenic lines compared to the wild-type tobacco. Taken together, these findings confirm that TaMYB20 is a potentially useful gene candidate for engineering drought tolerance in cultivated plants. Full article
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23 pages, 1459 KiB  
Article
Combining Genetic and Phenotypic Analyses for Detecting Bread Wheat Genotypes of Drought Tolerance through Multivariate Analysis Techniques
by Mohammed Sallam, Abdelhalim Ghazy, Abdullah Al-Doss and Ibrahim Al-Ashkar
Life 2024, 14(2), 183; https://doi.org/10.3390/life14020183 - 25 Jan 2024
Cited by 4 | Viewed by 2435
Abstract
Successfully promoting drought tolerance in wheat genotypes will require several procedures, such as field experimentations, measuring relevant traits, using analysis tools of high precision and efficiency, and taking a complementary approach that combines analyses of phenotyping and genotyping at once. The aim of [...] Read more.
Successfully promoting drought tolerance in wheat genotypes will require several procedures, such as field experimentations, measuring relevant traits, using analysis tools of high precision and efficiency, and taking a complementary approach that combines analyses of phenotyping and genotyping at once. The aim of this study is to assess the genetic diversity of 60 genotypes using SSR (simple sequence repeat) markers collected from several regions of the world and select 13 of them as more genetically diverse to be re-evaluated under field conditions to study drought stress by estimating 30 agro-physio-biochemical traits. Genetic parameters and multivariate analysis were used to compare genotype traits and identify which traits are increasingly efficient at detecting wheat genotypes of drought tolerance. Hierarchical cluster (HC) analysis of SSR markers divided the genotypes into five main categories of drought tolerance: four high tolerant (HT), eight tolerant (T), nine moderate tolerant (MT), six sensitive (S), and 33 high sensitive (HS). Six traits exhibit a combination of high heritability (>60%) and genetic gain (>20%). Analyses of principal components and stepwise multiple linear regression together identified nine traits (grain yield, flag leaf area, stomatal conductance, plant height, relative turgidity, glycine betaine, polyphenol oxidase, chlorophyll content, and grain-filling duration) as a screening tool that effectively detects the variation among the 13 genotypes used. HC analysis of the nine traits divided genotypes into three main categories: T, MT, and S, representing three, five, and five genotypes, respectively, and were completely identical in linear discriminant analysis. But in the case of SSR markers, they were classified into three main categories: T, MT, and S, representing five, three, and five genotypes, respectively, which are both significantly correlated as per the Mantel test. The SSR markers were associated with nine traits, which are considered an assistance tool in the selection process for drought tolerance. So, this study is useful and has successfully detected several agro-physio-biochemical traits, associated SSR markers, and some drought-tolerant genotypes, coupled with our knowledge of the phenotypic and genotypic basis of wheat genotypes. Full article
(This article belongs to the Special Issue Effects of Environmental Factors on Challenges of Plant Breeding)
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18 pages, 2343 KiB  
Article
Genetic Variation among Aeluropus lagopoides Populations Growing in Different Saline Regions
by Basharat A. Dar, Abdullah A. Al-Doss, Abdulaziz M. Assaeed, Muhammad M. Javed, Abdelhalim I. Ghazy, Saud L. Al-Rowaily and Ahmed M. Abd-ElGawad
Diversity 2024, 16(1), 59; https://doi.org/10.3390/d16010059 - 16 Jan 2024
Cited by 2 | Viewed by 1874
Abstract
Aeluropus lagopoides is a halophytic grass growing in different sabkhas of Saudi Arabia. In this study, 14 inter-simple sequence repeat (ISSR) and 15 sequence-related amplified polymorphism (SRAP) molecular markers were selected to investigate the genetic diversity within and among five natural populations of [...] Read more.
Aeluropus lagopoides is a halophytic grass growing in different sabkhas of Saudi Arabia. In this study, 14 inter-simple sequence repeat (ISSR) and 15 sequence-related amplified polymorphism (SRAP) molecular markers were selected to investigate the genetic diversity within and among five natural populations of A. Lagopiodes. The genetic diversity varied within and among populations. ISSR markers were slightly more efficient than SRAP markers in evaluating genetic diversity. Average polymorphism information content, effective number of alleles, Nei’s genetic diversity, and Shannon’s information index values of ISSR markers were higher than SRAP. Analysis of molecular variance revealed about 40% genetic variation among the population and 60% within the population. Overall, the genetic diversity was lowest in Jouf (40%), while the Qaseem populations were the highest (60%). Jizan populations were highly dissimilar to other regions. A Mantel test indicated a positive correlation between geographic and genetic distance. The cluster analysis showed three groups; the first group comprises Jouf and Salwa populations, the second group comprises Qareenah and Qaseem, and the third group comprises the Jizan population. This observation matched the geographic distribution of the species. These findings can help in the conservation of a diverse population of A. lagopoides in saline regions as well as rehabilitation of these degraded unique habitats. Full article
(This article belongs to the Special Issue Population Genetics of Animals and Plants)
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16 pages, 2806 KiB  
Article
Effect of Simulated Grazing on Morphological Plasticity and Resource Allocation of Aeluropus lagopoides
by Basharat A. Dar, Abdulaziz M. Assaeed, Saud L. Al-Rowaily, Abdullah A. Al-Doss, Muhammad M. Habib, Jahangir A. Malik and Ahmed M. Abd-ElGawad
Agronomy 2024, 14(1), 144; https://doi.org/10.3390/agronomy14010144 - 8 Jan 2024
Cited by 3 | Viewed by 1607
Abstract
Aeluropus lagopoides, a dominant palatable species in various sabkha and coastal regions of Saudi Arabia, can withstand harsh saline environments through phenotypic plasticity. When subjected to grazing, how A. lagopoides adapt phenotypically is currently unknown. There is a breakage in the chain [...] Read more.
Aeluropus lagopoides, a dominant palatable species in various sabkha and coastal regions of Saudi Arabia, can withstand harsh saline environments through phenotypic plasticity. When subjected to grazing, how A. lagopoides adapt phenotypically is currently unknown. There is a breakage in the chain of study on the spatial and temporal expansion strategy of A. lagopoides plants when subjected to different grazing stresses in different saline soil habitats. A grazing experiment was conducted to investigate the phenotypic plasticity and resource allocation pattern response of A. lagopoides in different saline soils. Individual A. lagopoides rhizomes from five saline regions were grown and exposed to varied grazing treatments in the form of clipping, viz; light, moderate, and heavy grazing, as compared to a grazing exclusion control. Our results showed that heavy grazing/clipping significantly decreased the shoot system and above-ground biomass in high-saline region plants in the early season. Plant length, root length, root and shoot biomass, the number of stolons, average stolon length, leaf area, and SLA of A. lagopiodes responded significantly to grazing intensities. A. lagopoides from the Qareenah, Qaseem, and Jizan regions were more tolerant to light grazing than A. lagopoides from the Salwa and Jouf regions. Light grazing showed significantly good re-growth, especially during the late season. Light grazing decreased the synthesis of chlorophyll content. Also, A. lagopiodes reduced the risk caused by reactive oxygen species via the increased accumulation of proline content. Overall, plants adapted to different morphological and physiological strategies to tolerate different levels of grazing intensities by adapting their morphological attributes. Though heavy grazing damages the plant, light and moderate grazing can be allowed to maintain the productivity and economic benefits of sabka habitats where soil conditions are moderately saline. Full article
(This article belongs to the Special Issue Advances in Grassland Ecology and Grass Phenotypic Plasticity)
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21 pages, 2263 KiB  
Article
Identification of Wheat Ideotype under Multiple Abiotic Stresses and Complex Environmental Interplays by Multivariate Analysis Techniques
by Ibrahim Al-Ashkar, Mohammed Sallam, Abdullah Ibrahim, Abdelhalim Ghazy, Nasser Al-Suhaibani, Walid Ben Romdhane and Abdullah Al-Doss
Plants 2023, 12(20), 3540; https://doi.org/10.3390/plants12203540 - 11 Oct 2023
Cited by 7 | Viewed by 1959
Abstract
Multiple abiotic stresses negatively impact wheat production all over the world. We need to increase productivity by 60% to provide food security to the world population of 9.6 billion by 2050; it is surely time to develop stress-tolerant genotypes with a thorough comprehension [...] Read more.
Multiple abiotic stresses negatively impact wheat production all over the world. We need to increase productivity by 60% to provide food security to the world population of 9.6 billion by 2050; it is surely time to develop stress-tolerant genotypes with a thorough comprehension of the genetic basis and the plant’s capacity to tolerate these stresses and complex environmental reactions. To approach these goals, we used multivariate analysis techniques, the additive main effects and multiplicative interaction (AMMI) model for prediction, linear discriminant analysis (LDA) to enhance the reliability of the classification, multi-trait genotype-ideotype distance index (MGIDI) to detect the ideotype, and the weighted average of absolute scores (WAASB) index to recognize genotypes with stability that are highly productive. Six tolerance multi-indices were used to test twenty wheat genotypes grown under multiple abiotic stresses. The AMMI model showed varying differences with performance indices, which disagreed with the trait and genotype differences used. The G01, G12, G16, and G02 were selected as the appropriate and stable genotypes using the MGIDI with the six tolerance multi-indices. The biplot features the genotypes (G01, G03, G11, G16, G17, G18, and G20) that were most stable and had high tolerance across the environments. The pooled analyses (LDA, MGIDI, and WAASB) showed genotype G01 as the most stable candidate. The genotype (G01) is considered a novel genetic resource for improving productivity and stabilizing wheat programs under multiple abiotic stresses. Hence, these techniques, if used in an integrated manner, strongly support the plant breeders in multi-environment trials. Full article
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22 pages, 5933 KiB  
Article
Phenotypic Plasticity Strategy of Aeluropus lagopoides Grass in Response to Heterogenous Saline Habitats
by Abdulaziz M. Assaeed, Basharat A. Dar, Abdullah A. Al-Doss, Saud L. Al-Rowaily, Jahangir A. Malik and Ahmed M. Abd-ElGawad
Biology 2023, 12(4), 553; https://doi.org/10.3390/biology12040553 - 5 Apr 2023
Cited by 8 | Viewed by 2601
Abstract
Understanding the response variation of morphological parameters and biomass allocation of plants in heterogeneous saline environments is helpful in evaluating the internal correlation between plant phenotypic plasticity mechanism and biomass allocation. The plasticity of plants alters the interaction among individuals and their environment [...] Read more.
Understanding the response variation of morphological parameters and biomass allocation of plants in heterogeneous saline environments is helpful in evaluating the internal correlation between plant phenotypic plasticity mechanism and biomass allocation. The plasticity of plants alters the interaction among individuals and their environment and consequently affects the population dynamics and aspects of community and ecosystem functioning. The current study aimed to assess the plasticity of Aeluropus lagopoides traits with variation in saline habitats. Understanding the habitat stress tolerance strategy of A. lagopoides is of great significance since it is one of the highly palatable forage grass in the summer period. Five different saline flat regions (coastal and inland) within Saudi Arabia were targeted, and the soil, as well as the morphological and physiological traits of A. lagopoides, were assessed. Comprehensive correlation analyses were performed to correlate the traits with soil, region, or among each other. The soil analysis revealed significant variation among the five studied regions for all measured parameters, as well as among the soil layers showing the highest values in the upper layer and decreased with the depth. Significant differences were determined for all tested parameters of the morphological and reproductive traits as well as for the biomass allocation of A. lagopoides, except for the leaf thickness. In the highly saline region, Qaseem, A. lagopoides showed stunted aerial growth, high root/shoot ratio, improved root development, and high biomass allocation. In contrast, the populations growing in the low saline region (Jizan) showed the opposite trend. Under the more stressful condition, like in Qaseem and Salwa, A. lagopoides produce low spikes in biomass and seeds per plant, compared to the lowest saline habitats, such as Jouf. There was no significant difference in physiological parameters except stomatal conductance (gs), which is highest in the Jizan region. In conclusion, the population of A. lagopoides is tolerant of harsh environments through phenotypic plasticity. This could be a candidate species to rehabilitate the saline habitats, considering saline agriculture and saline soil remediation. Full article
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24 pages, 2555 KiB  
Article
Agro-Physiological Indices and Multidimensional Analyses for Detecting Heat Tolerance in Wheat Genotypes
by Ibrahim Al-Ashkar, Mohammed Sallam, Abdelhalim Ghazy, Abdullah Ibrahim, Majed Alotaibi, Najeeb Ullah and Abdullah Al-Doss
Agronomy 2023, 13(1), 154; https://doi.org/10.3390/agronomy13010154 - 3 Jan 2023
Cited by 13 | Viewed by 2725
Abstract
Increasing atmospheric temperature can significantly reduce global wheat productivity; despite a mounting demand for wheat grain supplies. Developing genotypes with superior performance under current and future hot climates is a key challenge for wheat breeders. Multidimensional tools have supported plant breeders in increasing [...] Read more.
Increasing atmospheric temperature can significantly reduce global wheat productivity; despite a mounting demand for wheat grain supplies. Developing genotypes with superior performance under current and future hot climates is a key challenge for wheat breeders. Multidimensional tools have supported plant breeders in increasing the genetic stability rate of agro-physiological indices that influence wheat productivity. We used 25 agro-physiological indices to classify 20 bread wheat genotypes for their heat stress tolerance. Agro-physiological indices and multidimensional analyses to identify differences in genetic and phenotypic were used, combining these analyses to reach selection criteria of accurate and credible. The 25 studied indices reflected high genotypic and environmental variations. We used 16 indices, which have brought together high heritability and genetic gain as indicators for screening heat-tolerant genotypes. Based on the seven principal comprehensive indices of (D value), wheat genotypes were classified into three highly heat-tolerant, four heat-tolerant, six moderately heat-tolerant, five heat-sensitive, and two highly heat-sensitive wheat genotypes. Based on four critical indices [grain yield (GY), grain-filling duration (GFD), spike length (SL) and canopy temperature (CT)] obtained from stepwise multiple linear regression (SMLR), the genotypes were grouped as four genotypes highly heat-tolerant, six heat-tolerant, two moderately heat-tolerant, four heat-sensitive and four highly heat-sensitive. The classification D value and SMLR distances were significantly correlated based on the Mantel test, with a perfect match in nine genotypes. SMLR indicated that a mathematical equation for the evaluation of wheat heat tolerance was established: GY = 0.670 + 0.504 × GFD + 0.334 × SL − 0.466 × CT (R2 = 0.739; average prediction accuracy of 94.12%). SMLR-based classification of wheat genotypes for heat tolerance was further verified through discriminant analysis, which showed that prior and posterior classification was identical in eighteen genotypes. Cross-validation showed that prior and posterior classification was identical in thirteen genotypes. Based on this study, we can recommend tolerated new wheat lines (DHL25, DHL05, DHL23 and DHL08) and cultivar Pavone-76 as a promising genetic source for heat-tolerant breeding programs. Full article
(This article belongs to the Special Issue Crop Productivity and Energy Balance in Large-Scale Fields)
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26 pages, 1686 KiB  
Article
Assessing the Suitability of Selection Approaches and Genetic Diversity Analysis for Early Detection of Salt Tolerance of Barley Genotypes
by Muhammad Matloob Javed, Abdullah A. Al-Doss, Muhammad Usman Tahir, Muhammad Altaf Khan and Salah El-Hendawy
Agronomy 2022, 12(12), 3217; https://doi.org/10.3390/agronomy12123217 - 19 Dec 2022
Cited by 11 | Viewed by 2644
Abstract
Assessment of the salt tolerance of a large genotype collection at the early growth stages may assist in the fast-tracking improvement of salt-tolerant barley genotypes in breeding programs. This study aimed to investigate the ability of traits related to seed germination ability and [...] Read more.
Assessment of the salt tolerance of a large genotype collection at the early growth stages may assist in the fast-tracking improvement of salt-tolerant barley genotypes in breeding programs. This study aimed to investigate the ability of traits related to seed germination ability and seedling growth performance with helping of nine sequence-related amplified polymorphism (SRAP) markers to detect the salt tolerance of 70 barley genotypes during the early growth stages. The different genotypes were exposed to three salt concentrations (0, 100, and 200 mM NaCl) and evaluated for salt tolerance by looking at germination percentage, germination index, and mean germination time during eight days as well as the lengths and weights of seedling shoot and root after 21 days from sowing. The results showed that genotypic variations in germination ability and seedling growth performance obviously appeared under 200 and 100 mM NaCl, respectively. The germination traits exhibited a strong correlation among themselves, whereas they had a poor correlation with seedling traits. A strong and positive correlation was only observed for shoot fresh weight with shoot length and root fresh weight under salinity conditions. Principal component analysis revealed that the first two components, which explained 53% of the total variability, succeeded to identify the genotypes with high salt tolerance during only one stage (germination or seedling stage) and both stages. Cluster analysis based on the stress tolerance index of germination and seedling traits grouped 70 genotypes into four key clusters, with genotypes grouped in cluster 1 and cluster 2 being salt tolerant during the germination stage and moderately tolerant during the seedling stage; the opposite was found with the genotypes grouped in cluster 4. According to Ward’s method, the salt tolerance of genotypes that ranked as most salt-tolerant (T) or salt-sensitive (S) remained almost unchanged during germination and seedling stages. In contrast, a change in salt tolerance with both stages was found for the genotypes that ranked as moderately salt-tolerant (MT) and salt-sensitive (MS) genotypes. The nine SRAP markers divided the tested genotypes into two distinct clusters, with clusters B had the most T and MT genotypes. Finally, using appropriate statistical methods presented in this study with SRAP markers will be useful for assessing the salt tolerance of a large number of barley genotypes and selecting the genotypes tolerant of and sensitive to salinity at the early growth stage. Full article
(This article belongs to the Special Issue Crop Tolerance under Biotic and Abiotic Stresses)
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22 pages, 3234 KiB  
Article
Multiple Stresses of Wheat in the Detection of Traits and Genotypes of High-Performance and Stability for a Complex Interplay of Environment and Genotypes
by Ibrahim Al-Ashkar, Mohammed Sallam, Nasser Al-Suhaibani, Abdullah Ibrahim, Abdullah Alsadon and Abdullah Al-Doss
Agronomy 2022, 12(10), 2252; https://doi.org/10.3390/agronomy12102252 - 21 Sep 2022
Cited by 11 | Viewed by 2527
Abstract
The effect of traits and the interaction of genotype × environment (GE) is one of the major challenges in detecting traits and genotypes with outstanding performance and stability through various stresses and years. The objective of this study was to identify the genetic [...] Read more.
The effect of traits and the interaction of genotype × environment (GE) is one of the major challenges in detecting traits and genotypes with outstanding performance and stability through various stresses and years. The objective of this study was to identify the genetic influence traits of wheat, and genotypes with outstanding performance and stability under different environmental stress. The trials were carried out in two consecutive seasons with three treatments (optimal irrigation, limited irrigation, and heat stress), totaling six test environments at two different locations. After observing the importance of GE interaction, and the statistical significance for all studied traits, multivariate analysis was applied using stepwise regression (SR) for detecting influenced traits, and AMMI, AMMI’s stability values (ASV), yield stability index (YSI), superiority and GGE biplot methods to identify the genotype’s phenotypic stability. SR analysis showed that nine out of 22 traits have contributed significantly to grain yield (GY), which varied according to the environment. Equations of the models (GY) regression coefficient values reflected the importance seven of them have on a significant positive correlation on GY. The study confirmed the importance of AMMI and GGE biplots in decoding the GEI based on GY data. AMMI1 biplots showed that the three environments E1, E4, and E6 were the stronger interacting environments than E2, E3, and E5, in which the interaction was weak. YSI, superiority analysis, and superiority multi-trait analysis scores were largely compatible. YSI scores described the six genotypes viz, G5 (DHL26), G12 (DHL29), G10 (DHL01), G18 (Sakha-93), G2 (DHL02) and, G6 (Gemmeiza-9), these were marked by high stability and productivity. The GGE biplot analysis showed genotypes (G15 (Misr1) and G4 (DHL07)) recorded the highest grain yield in E3 and E4, whereas genotype G18 (Sakha-93) was in E6. It also showed G19 (Pavone-76) was the best genotype due to being situated in the center of the concentric circles and due to its high-yield. The methods considered were compatible with the detection of promising wheat genotypes with high mean performance and outstanding phenotypic stability across various stresses and years. Full article
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16 pages, 32726 KiB  
Article
Vegetation Composition of the Halophytic Grass Aeluropus lagopoides Communities within Coastal and Inland Sabkhas of Saudi Arabia
by Basharat A. Dar, Abdulaziz M. Assaeed, Saud L. Al-Rowaily, Abdullah A. Al-Doss and Ahmed M. Abd-ElGawad
Plants 2022, 11(5), 666; https://doi.org/10.3390/plants11050666 - 28 Feb 2022
Cited by 14 | Viewed by 3762
Abstract
Sabkhas are unique, highly saline ecosystems, where specially adapted plants can grow. Aeluropus lagopoides (L.) Thwaites is a halophytic forage plant growing in salt marsh habitats of inland and coastal sabkhas of Saudi Arabia. The present study provides an analysis of vegetation composition [...] Read more.
Sabkhas are unique, highly saline ecosystems, where specially adapted plants can grow. Aeluropus lagopoides (L.) Thwaites is a halophytic forage plant growing in salt marsh habitats of inland and coastal sabkhas of Saudi Arabia. The present study provides an analysis of vegetation composition and distribution of the A. lagopoides community in five different regions within Saudi Arabia, emphasizing the environmental factors that affect species distribution. The floristic survey revealed the presence of 48 species, belonging to 26 families. Poaceae, Chenopodiaceae, Mimosaceae, Zygophyllaceae, and Asteraceae are the largest families (50% of total species). Phanerophyte, followed by chamaephytes, are the most frequent forms, indicating a typical saline desert life-form spectrum. The vegetation analysis revealed the dominance of A. lagopoides in all locations, where it was the most dominant species in Qareenah, Qaseem, and Salwa locations, and the second most dominant species in Jouf and Jizan locations. The flourishment of this halophytic grass within a wide soil range in sabkhas revealed its adaptability to the harsh environment, which could be ascribed to its structural adaptations and modifications, as well as the phenotypic plasticity. The Qareenah and Qaseem locations attained the highest species richness and evenness, while the Jizan location was the least diverse. Within the studied locations, other highly salt-tolerant species were determined with high abundances, such as Suaeda aegyptiaca (Hasselq.) Zohary, Zygophyllum album L.f., Tamarix nilotica (Ehrenb.) Bunge, Cressa cretica L., and Salicornia europaea L. The soil analysis showed a significant variation for all parameters among the studied locations, except for pH, chloride, and clay content. The Qaseem location revealed the highest values of most soil parameters, while the Jizan location showed the lowest. The canonical correspondence analysis (CCA) showed that the community structure and diversity are mainly affected by the soil salinity and moisture. Due to the economic potentialities of A. lagopoides as a forage plant and sand stabilizer, the conservation of its habitats is of vital importance. In addition, this grass could be integrated as a promising forage candidate that can be planted in saline-affected areas, even in the summer dry season. Full article
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15 pages, 2121 KiB  
Article
Phylogenetic Analysis of Ryegrass (Lolium rigidum) Populations and the Proliferation of ALS Resistance in Saudi Arabia
by Abdelhalim I. Ghazy, Talal K. Al-Ateeq, Eid I. Ibrahim, Hussein M. Migdadi, Kotb A. Attia, Muhammad Javed, Muhammad Altaf Khan, Ibrahim Al-Ashkar and Abdullah Al-Doss
Agriculture 2022, 12(2), 290; https://doi.org/10.3390/agriculture12020290 - 17 Feb 2022
Cited by 1 | Viewed by 2688
Abstract
Morphological and simple sequence repeat (SSR) approaches were used to determine the genetic diversity of 29 ryegrass (Lolium rigidum) genotypes belonging to eight populations collected from several regions in Saudi Arabia. In this study, 50 in Silico-developed SSR markers derived from [...] Read more.
Morphological and simple sequence repeat (SSR) approaches were used to determine the genetic diversity of 29 ryegrass (Lolium rigidum) genotypes belonging to eight populations collected from several regions in Saudi Arabia. In this study, 50 in Silico-developed SSR markers derived from genomic and expressed sequence tag (EST) microsatellites were examined. Analysis of variance showed highly significant differences in all studied traits. Cluster analysis based on the morphological data of the 29 Lolium genotypes and using PAST (paleontological statistics) software was performed. According to the results, clustering was based mostly on genotype location. The sensitive genotypes for herbicide were clustered in one group. In addition, using EST-SSR markers, we observed the existence of a considerable number of genetic variations among Lolium genotypes. From these markers, only 31 produced reasonable amplification products. The results showed that 23 SSR markers revealed that 74.19% were polymorphic. The number of alleles detected per primer ranged from one to five in the primer LTC SSR1. The tested primers amplified 1434 bands across eight populations, with an average of 46.26 bands per primer. The polymorphism information content (PIC) values ranged from 0.11 to 0.76 for the primers LT EST-SSR5 and LTC SSR1. The unweighted pair group method with arithmetic average (UPGMA) clustering of the 29 genotypes representing eight populations was based essentially on their locations and herbicide-tolerance levels. Most of the populations formed into four clusters, together representing genotypes. Moreover, the tolerant populations were distinguished from the sensitive ones. The relationship between the genetic diversity and geographical source of Lolium rigidum populations of Saudi Arabia was revealed through this study. The results showed that the efficiency of developed SSR markers are transferable across species. They have been helpful to assess the genetic diversity of the ryegrass population as this could be applied to differentiate between tolerant and sensitive populations of ryegrass. Full article
(This article belongs to the Section Crop Genetics, Genomics and Breeding)
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