Virulence Mechanisms, Detection and Control of Aquatic Animal Viruses

A special issue of Pathogens (ISSN 2076-0817). This special issue belongs to the section "Viral Pathogens".

Deadline for manuscript submissions: closed (30 November 2022) | Viewed by 21095

Special Issue Editor


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Guest Editor
Department of Pathology and Microbiology, University of Prince Edward Island, Atlantic Veterinary College, Charlottetown, PE, Canada
Interests: veterinary virology; aquatic viruses; biology of viral pathogens; mechanisms of virus virulence; viral pathogenesis; improvement in methods of virus detection and control
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Special Issue Information

Dear Colleagues,

Aquaculture is now the main source of seafood for human consumption and is projected to rise to 62% by 2030 as catches from wild capture fisheries will continue to be flat for the foreseeable future. Fish, mollusks, and crustaceans represent the most economically important global aquaculture industry subsectors, expected to reach $202.96 billion USD this year. The fast growth of intensive aquaculture in the last 4 decades has been accompanied by the emergence of aquatic animal viruses (Table 1) that impose severe economic losses on the aquaculture industry. This is inherent in farming a large number of animal species in the aquatic environment that may be a viral reservoir, and particularly in marine aquaculture, where the farmer has less control of the system. Several strategies are used to ensure sustainability of this industry, including improved biosecurity, implementation of diagnostic tools and surveillance programs for early detection of virus infections, use of efficacious viral vaccines in finfish aquaculture, and use of immunostimulants, probiotics/prebiotics/symbiotics and other novel control technologies (e.g., RNA interference, RNAi) where vaccination is not as effective such as in crustacean and mollusk aquaculture. These strategies have been supported by the development of reverse genetic systems of aquatic animal RNA viruses, allowing genetic manipulation of viral genomes, which has facilitated identification of virulence factors (i.e., gene products that influence high virulence of aquatic animal viruses) and development of improved diagnostics and vaccines.

This Special Issue of Pathogens aims to cover the broad spectrum of recent advances in research on virulence mechanisms, detection, and prevention and control of aquatic animal viruses. Our purpose is to compile a body of work identifying virulence mechanisms in aquatic animal viruses with the aim of improving strategies for detection and prevention and control of aquatic animal viruses in order to mitigate the risk of rapid virus spread and of development of clinical disease and so stem the tide of emerging aquatic animal viruses. We therefore encourage the submission of review articles, original research full-length articles or short communications, or commentary covering any aspect of these topics. We look forward to your valuable contributions that will promote further developments in this field.

I am honored and delighted to guest-edit this Special Issue and thank you for your anticipated contribution.

Prof. Frederick Kibenge
Guest Editor

References

  1. Biacchesi, S. 2011. The reverse genetics applied to fish RNA viruses. Veterinary Research 42:12.
  2. Chiu, C.-H., Guu, Y.-K., Liu, C.-H., Pan, T.-M., Cheng, W. 2007. Immune responses and gene expression in white shrimp, Litopenaeus vannamei, induced by Lactobacillus plantarum. Fish Shellfish Immunol. 23: 364–377.
  3. Evensen, Ø. 2020. Immunology and vaccinology of farmed aquatic animals. In: Kibenge, F.S.B., and Powell, M. (Eds.), Aquaculture Health Management. Publisher: Academic Press (Elsevier), (in press).
  4. Kibenge, F.S.B. 2019. Emerging viruses in aquaculture. Invited review article in “Emerging Viruses: Interspecies transmission” section of Current Opinion in Virology (Editors-in-Chief: Mary Estes, Marion Koopamans and Ab Osterhaus), Guest Editors Jürgen Richt and Adolfo Garcia-Sastre. Current Opinion in Virology 34:97-103, https://doi.org/10.1016/j.coviro.2018.12.008.
  5. Scarfe, D., Palić, D. 2020. Aquaculture biosecurity: Practical approach to prevent, control and eradicate diseases. In: Kibenge, F.S.B., and Powell, M. (Eds.), Aquaculture Health Management. Publisher: Academic Press (Elsevier), (in press).
  6. Smith, V.J., Brown, J.H., Hauton, C. 2003. Immunostimulation in crustaceans: does it protect against infection? Fish Shellfish Immunol. 15:71-90.
  7. Stentiford, G.D., Neil, D.M., Peeler, E.J., Shields, J.D., Small, H.J., Flegel, T.W., Vlak, J.M., Jones, B., Morado, F., Moss, S., Lotz, J., Bartholomay, L., Behringer, D.C., Hauton, C., Lightner, D.V. 2012. Disease will limit future food supply from global crustacean fishery and aquaculture sectors. Journal of Invertebrate Pathology 110:141-157. doi: 10.1016/j.jip.2012.03.013.
  8. Stentiford, G.D., Sritunyalucksana, K., Flegel, T.W., Williams, B.A.P., Withyachumnarnkul, B. Itsathitphaisarn, O. 2017. New paradigms to help solve the global aquaculture disease crisis. PLoS Pathog 13: e1006160. https://doi.org/10.1371/journal.ppat.1006160.
  9. Wang, Q., Ji, W., Xu, Z. 2020. Current use and development of fish vaccines in China. Fish and Shellfish Immunology 96:223-234.

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Keywords

  • Pathogenesis
  • Virus virulence
  • Biosecurity
  • Virulence factors
  • Reverse genetics
  • Metagenomics
  • Next-generation sequencing (NGS)
  • In vitro growth kinetics
  • Virus discovery
  • RNA interference (RNAi)
  • Viral proteins
  • Viral vaccines
  • Immunostimulants

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Related Special Issue

Published Papers (4 papers)

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Research

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17 pages, 3634 KiB  
Article
Isolation of a New Infectious Pancreatic Necrosis Virus (IPNV) Variant from Genetically Resistant Farmed Atlantic Salmon (Salmo salar) during 2021–2022
by Marcos Godoy, Molly J. T. Kibenge, Marco Montes de Oca, Juan Pablo Pontigo, Yoandy Coca, Diego Caro, Karina Kusch, Rudy Suarez, Ian Burbulis and Frederick S. B. Kibenge
Pathogens 2022, 11(11), 1368; https://doi.org/10.3390/pathogens11111368 - 16 Nov 2022
Cited by 6 | Viewed by 4978
Abstract
Infectious pancreatic necrosis (IPN), caused by IPNV, affects several species of farmed fish, particularly Atlantic salmon, and is responsible for significant economic losses in salmon aquaculture globally. Despite the introduction of genetically resistant farmed Atlantic salmon and vaccination strategies in the Chilean salmon [...] Read more.
Infectious pancreatic necrosis (IPN), caused by IPNV, affects several species of farmed fish, particularly Atlantic salmon, and is responsible for significant economic losses in salmon aquaculture globally. Despite the introduction of genetically resistant farmed Atlantic salmon and vaccination strategies in the Chilean salmon industry since 2019, the number of IPN outbreaks has been increasing in farmed Atlantic salmon in the freshwater phase. This study examined gross and histopathological lesions of IPNV-affected fish, as well as the IPNV nucleotide sequence encoding the VP2 protein in clinical cases. The mortality reached 0.4% per day, and the cumulative mortality was from 0.4 to 3.5%. IPNV was isolated in the CHSE-214 cell line and was confirmed by RT-PCR, and VP2 sequence analysis. The analyzed viruses belong to IPNV genotype 5 and have 11 mutations in their VP2 protein. This is the first report of IPN outbreaks in farmed Atlantic salmon genetically resistant to IPNV in Chile. Similar outbreaks were previously reported in Scotland and Norway during 2018 and 2019, respectively. This study highlights the importance of maintaining a comprehensive surveillance program in conjunction with the use of farmed Atlantic salmon genetically resistant to IPNV. Full article
(This article belongs to the Special Issue Virulence Mechanisms, Detection and Control of Aquatic Animal Viruses)
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12 pages, 1440 KiB  
Communication
Extensive Phylogenetic Analysis of Piscine Orthoreovirus Genomic Sequences Shows the Robustness of Subgenotype Classification
by Marcos Godoy, Daniel A. Medina, Rudy Suarez, Sandro Valenzuela, Jaime Romero, Molly Kibenge, Yingwei Wang and Frederick Kibenge
Pathogens 2021, 10(1), 41; https://doi.org/10.3390/pathogens10010041 - 7 Jan 2021
Cited by 10 | Viewed by 2886
Abstract
Piscine orthoreovirus (PRV) belongs to the family Reoviridae and has been described mainly in association with salmonid infections. The genome of PRV consists of about 23,600 bp, with 10 segments of double-stranded RNA, classified as small (S1 to S4), medium (M1, M2 and [...] Read more.
Piscine orthoreovirus (PRV) belongs to the family Reoviridae and has been described mainly in association with salmonid infections. The genome of PRV consists of about 23,600 bp, with 10 segments of double-stranded RNA, classified as small (S1 to S4), medium (M1, M2 and M3) and large (L1, L2 and L3); these range approximately from 1000 bp (segment S4) to 4000 bp (segment L1). How the genetic variation among PRV strains affects the virulence for salmonids is still poorly understood. The aim of this study was to describe the molecular phylogeny of PRV based on an extensive sequence analysis of the S1 and M2 segments of PRV available in the GenBank database to date (May 2020). The analysis was extended to include new PRV sequences for S1 and M2 segments. In addition, subgenotype classifications were assigned to previously published unclassified sequences. It was concluded that the phylogenetic trees are consistent with the original classification using the PRV genomic segment S1, which differentiates PRV into two major genotypes, I and II, and each of these into two subgenotypes, designated as Ia and Ib, and IIa and IIb, respectively. Moreover, some clusters of country- and host-specific PRV subgenotypes were observed in the subset of sequences used. This work strengthens the subgenotype classification of PRV based on the S1 segment and can be used to enhance research on the virulence of PRV. Full article
(This article belongs to the Special Issue Virulence Mechanisms, Detection and Control of Aquatic Animal Viruses)
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12 pages, 2909 KiB  
Article
Low Pathogenic Strain of Infectious Pancreatic Necrosis Virus (IPNV) Associated with Recent Outbreaks in Iranian Trout Farms
by Sohrab Ahmadivand, Manfred Weidmann, Mansour El-Matbouli and Hooman Rahmati-Holasoo
Pathogens 2020, 9(10), 782; https://doi.org/10.3390/pathogens9100782 - 24 Sep 2020
Cited by 20 | Viewed by 3630
Abstract
Infectious pancreatic necrosis (IPN), first described as acute viral catarrhal enteritis, is a highly contagious disease with variable pathogenicity that has been linked to genetic variation in the viral VP2 gene encoding the capsid protein. In this study, the IPN virus (IPNV) is [...] Read more.
Infectious pancreatic necrosis (IPN), first described as acute viral catarrhal enteritis, is a highly contagious disease with variable pathogenicity that has been linked to genetic variation in the viral VP2 gene encoding the capsid protein. In this study, the IPN virus (IPNV) is isolated from the moribund fish from five of fourteen Iranian trout farms from 2015 to 2017. The affected fish showed mortality rates ranging from 20% to 60%, with the main clinical signs of exophthalmia, darkened skin, and mild abdominal distension, as well as yellow mucoid fluid in the intestine. Histopathological examination of intestinal sections confirmed acute catarrhal enteritis in all samples. RT-PCR assay of the kidney tissue and cell culture (CHSE-214) samples consistently confirmed the presence of the virus. The phylogenetic analysis of the partial VP2 sequence revealed that the detected isolates belong to genogroup 5, and are closely related to the Sp serotype strains of European origin. Characterization of VP2 of all isolates revealed the P217T221 motif that previously was associated with avirulence or low virulence, while all IPNV-positive fish in this study were clinically affected with moderate mortality. The IPNV isolates from Iran are associated with two lineages that appear to have originated from Europe, possibly via imported eggs. Full article
(This article belongs to the Special Issue Virulence Mechanisms, Detection and Control of Aquatic Animal Viruses)
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Review

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21 pages, 1141 KiB  
Review
Challenges and Solutions to Viral Diseases of Finfish in Marine Aquaculture
by Kizito K. Mugimba, Denis K. Byarugaba, Stephen Mutoloki, Øystein Evensen and Hetron M. Munang’andu
Pathogens 2021, 10(6), 673; https://doi.org/10.3390/pathogens10060673 - 30 May 2021
Cited by 42 | Viewed by 8306
Abstract
Aquaculture is the fastest food-producing sector in the world, accounting for one-third of global food production. As is the case with all intensive farming systems, increase in infectious diseases has adversely impacted the growth of marine fish farming worldwide. Viral diseases cause high [...] Read more.
Aquaculture is the fastest food-producing sector in the world, accounting for one-third of global food production. As is the case with all intensive farming systems, increase in infectious diseases has adversely impacted the growth of marine fish farming worldwide. Viral diseases cause high economic losses in marine aquaculture. We provide an overview of the major challenges limiting the control and prevention of viral diseases in marine fish farming, as well as highlight potential solutions. The major challenges include increase in the number of emerging viral diseases, wild reservoirs, migratory species, anthropogenic activities, limitations in diagnostic tools and expertise, transportation of virus contaminated ballast water, and international trade. The proposed solutions to these problems include developing biosecurity policies at global and national levels, implementation of biosecurity measures, vaccine development, use of antiviral drugs and probiotics to combat viral infections, selective breeding of disease-resistant fish, use of improved diagnostic tools, disease surveillance, as well as promoting the use of good husbandry and management practices. A multifaceted approach combining several control strategies would provide more effective long-lasting solutions to reduction in viral infections in marine aquaculture than using a single disease control approach like vaccination alone. Full article
(This article belongs to the Special Issue Virulence Mechanisms, Detection and Control of Aquatic Animal Viruses)
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