Research on Novel Bio-Active Metabolites Produced by Microorganisms

A special issue of Microorganisms (ISSN 2076-2607). This special issue belongs to the section "Environmental Microbiology".

Deadline for manuscript submissions: closed (30 June 2024) | Viewed by 7393

Special Issue Editor


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Guest Editor
Department of Microbiology, Institute of Integrative Biology of the Cell (I2BC), UMR 9198 CNRS, University Paris Saclay, 91190 Gif sur Yvette, France
Interests: Regulation of antibiotic biosynthesis; energetic metabolism; function of antibiotics for the producing bacteria; Streptomyces
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Special Issue Information

Dear Colleagues,

Random mutagenesis or isolation of spontaneous variants of natural actinomycetes or fungal species with different abilities to produce antibiotics than the original strains has been a strategy extensively used in industry to improve the antibiotic titer of strains of interest. A comparative analysis of the genome sequence of these over- or even down-producing variants could contribute to a better knowledge of the various processes that have an impact on antibiotic biosynthesis. This approach might lead to the identification of genes or pathways that promote or compete with or regulate the biosynthesis of already known specialized metabolites or lead to a strong enhancement of the expression of cryptic biosynthetic pathways. The outcomes of such approaches should guide the choice of rational genetic engineering strategies in clean genetic backgrounds to improve the production of already known specialized metabolites or even trigger the expression of cryptic biosynthetic pathways.

Submitted manuscripts are expected to include comparative phenotypic and genomic analysis of original strains with variants showing either enhanced or reduced production of specialized metabolites and resulting from:

  • Chemical or UV random mutagenesis;
  • Transposon mutagenesis;
  • Deletion/mutation of genes involved in DNA repair;
  • Deletion/mutation of genes leading to an alteration of transcriptional or translational fidelity;
  • Growth in stressful conditions promoting extensive genome rearrangements;
  • Deletion/mutation of indispensable gene leading to extensive genome rearrangements.

(This list is not exhaustive)  

Dr. Marie-Joëlle Virolle
Guest Editor

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Keywords

  • streptomyces
  • fungi
  • antibiotics
  • specialized metabolites
  • mutagenesis
  • mutations
  • deletions
  • genome rearrangements

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Published Papers (2 papers)

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Research

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14 pages, 2354 KiB  
Article
Genome Analysis of a Variant of Streptomyces coelicolor M145 with High Lipid Content and Poor Ability to Synthetize Antibiotics
by Thierry Dulermo, Clara Lejeune, Ece Aybeke, Sonia Abreu, Jean Bleton, Michelle David, Ariane Deniset-Besseau, Pierre Chaminade, Annabelle Thibessard, Pierre Leblond and Marie-Joelle Virolle
Microorganisms 2023, 11(6), 1470; https://doi.org/10.3390/microorganisms11061470 - 31 May 2023
Cited by 3 | Viewed by 2243
Abstract
Streptomyces coelicolor M145 is a model strain extensively studied to elucidate the regulation of antibiotic biosynthesis in Streptomyces species. This strain abundantly produces the blue polyketide antibiotic, actinorhodin (ACT), and has a low lipid content. In a process designed to delete the gene [...] Read more.
Streptomyces coelicolor M145 is a model strain extensively studied to elucidate the regulation of antibiotic biosynthesis in Streptomyces species. This strain abundantly produces the blue polyketide antibiotic, actinorhodin (ACT), and has a low lipid content. In a process designed to delete the gene encoding the isocitrate lyase (sco0982) of the glyoxylate cycle, an unexpected variant of S. coelicolor was obtained besides bona fide sco0982 deletion mutants. This variant produces 7- to 15-fold less ACT and has a 3-fold higher triacylglycerol and phosphatidylethanolamine content than the original strain. The genome of this variant was sequenced and revealed that 704 genes were deleted (9% of total number of genes) through deletions of various sizes accompanied by the massive loss of mobile genetic elements. Some deletions include genes whose absence could be related to the high total lipid content of this variant such as those encoding enzymes of the TCA and glyoxylate cycles, enzymes involved in nitrogen assimilation as well as enzymes belonging to some polyketide and possibly trehalose biosynthetic pathways. The characteristics of this deleted variant of S. coelicolor are consistent with the existence of the previously reported negative correlation existing between lipid content and antibiotic production in Streptomyces species. Full article
(This article belongs to the Special Issue Research on Novel Bio-Active Metabolites Produced by Microorganisms)
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Review

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21 pages, 1821 KiB  
Review
Role of Carbon, Nitrogen, Phosphate and Sulfur Metabolism in Secondary Metabolism Precursor Supply in Streptomyces spp.
by Sergii Krysenko and Wolfgang Wohlleben
Microorganisms 2024, 12(8), 1571; https://doi.org/10.3390/microorganisms12081571 - 31 Jul 2024
Cited by 7 | Viewed by 2666
Abstract
The natural soil environment of Streptomyces is characterized by variations in the availability of nitrogen, carbon, phosphate and sulfur, leading to complex primary and secondary metabolisms. Their remarkable ability to adapt to fluctuating nutrient conditions is possible through the utilization of a large [...] Read more.
The natural soil environment of Streptomyces is characterized by variations in the availability of nitrogen, carbon, phosphate and sulfur, leading to complex primary and secondary metabolisms. Their remarkable ability to adapt to fluctuating nutrient conditions is possible through the utilization of a large amount of substrates by diverse intracellular and extracellular enzymes. Thus, Streptomyces fulfill an important ecological role in soil environments, metabolizing the remains of other organisms. In order to survive under changing conditions in their natural habitats, they have the possibility to fall back on specialized enzymes to utilize diverse nutrients and supply compounds from primary metabolism as precursors for secondary metabolite production. We aimed to summarize the knowledge on the C-, N-, P- and S-metabolisms in the genus Streptomyces as a source of building blocks for the production of antibiotics and other relevant compounds. Full article
(This article belongs to the Special Issue Research on Novel Bio-Active Metabolites Produced by Microorganisms)
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