Junk DNA' is not Junk

A special issue of Genes (ISSN 2073-4425). This special issue belongs to the section "Molecular Genetics and Genomics".

Deadline for manuscript submissions: closed (15 May 2012) | Viewed by 97490

Special Issue Editor


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Guest Editor
Department of Animal Science, The University of California, Davis, CA, USA
Interests: avian and animal genetics and genomics; chicken genetics/genomics; developmental genetics; cytogenetics; chromosome biology; telomere biology; host-genetics of disease resistance/susceptibility

Special Issue Information

Dear Colleagues,

Since the late Susumu Ohno first introduced the phrase “junk DNA” in 1972 (“So Much Junk DNA in Our Genome”, Brookhaven Symposium on Biology 23:366-370) the concept has captured the imagination of scientists and non-scientists alike leading to much research as well as debate.  Ohno’s original hypothesis regarding the origin and evolutionary significance of “junk DNA” has been modified and refined over the last four decades benefitting from recent comparative and functional genomics analyses and as influenced by the large-scale bioinformatics analysis of sequences. Many have argued we must abandon Ohno’s terminology, but yet it persists, largely because it remains an interesting conceptual framework to explore given the relative enormity of sequence content in the non-protein-coding category and the finding that gene numbers appear surprisingly similar among vertebrates while non-coding sequences range from being widely variable to unexpected conservation.

This special issue seeks to cover a broad range of topics on the types, functions, conservation, evolution and ultimately the biological significance of “junk DNA” broadly defined as “non-protein-coding sequence” found within and among genomes.  We encourage contributions covering the diversity of species. We welcome scientific perspectives, reviews and original research papers on the topic of “junk DNA” and its biological significance.

Prof. Dr. Mary E. Delany
Guest Editor

Keywords

  • Junk DNA
  • non-coding DNA
  • genome evolution
  • telomeres
  • centromeres
  • functional RNA
  • siRNA
  • piRNA
  • lincRNA
  • miRNA
  • snoRNA
  • rRNA
  • tRNA
  • pseudogenes
  • regulatory elements
  • introns
  • transposons
  • retrotransposons
  • repetitive DNA
  • Heterochromatin
  • ENCODE

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Published Papers (9 papers)

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20 pages, 449 KiB  
Review
Identifying and Characterizing Regulatory Sequences in the Human Genome with Chromatin Accessibility Assays
Genes 2012, 3(4), 651-670; https://doi.org/10.3390/genes3040651 - 15 Oct 2012
17 pages, 375 KiB  
Article
Factors Behind Junk DNA in Bacteria
Genes 2012, 3(4), 634-650; https://doi.org/10.3390/genes3040634 - 12 Oct 2012
13 pages, 408 KiB  
Article
A Model of Evolution of Development Based on Germline Penetration of New “No-Junk” DNA
Genes 2012, 3(3), 492-504; https://doi.org/10.3390/genes3030492 - 2 Aug 2012
20 pages, 429 KiB  
Review
Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences
Genes 2012, 3(3), 461-480; https://doi.org/10.3390/genes3030461 - 26 Jul 2012
17 pages, 413 KiB  
Review
Microsatellites with Macro-Influence in Ewing Sarcoma
Genes 2012, 3(3), 444-460; https://doi.org/10.3390/genes3030444 - 23 Jul 2012
14 pages, 235 KiB  
Review
Transposable Elements: From DNA Parasites to Architects of Metazoan Evolution
Genes 2012, 3(3), 409-422; https://doi.org/10.3390/genes3030409 - 12 Jul 2012
17 pages, 374 KiB  
Review
The Human Transcriptome: An Unfinished Story
Genes 2012, 3(3), 344-360; https://doi.org/10.3390/genes3030344 - 29 Jun 2012
15 pages, 187 KiB  
Review
Molecular Functions of Long Non-Coding RNAs in Plants
Genes 2012, 3(1), 176-190; https://doi.org/10.3390/genes3010176 - 8 Mar 2012
9 pages, 238 KiB  
Opinion
A Model of Repetitive-DNA-Organized Chromatin Network of Interphase Chromosomes
Genes 2012, 3(1), 167-175; https://doi.org/10.3390/genes3010167 - 7 Mar 2012
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