Crops, Volume 3, Issue 3 (September 2023) – 5 articles

Post-flowering drought tolerance (stay-green) in grain sorghum (Sorghum bicolor (L.) Moench) is an important agronomic trait in many arid and semiarid environments throughout the world. Stay-green has been associated with increased grain yields, as well as resistance to lodging and charcoal rot disease. Nonetheless, the relative effects of genotype, environment, and genotype × environment interactions are not well understood for this trait; similarly, the relationship between various leaf sugars and stay-green has not been sufficiently evaluated in diverse germplasm. Thus, the goals of this study were to determine the genotype, environment, and genotype by environment (GxE) effects for leaf dhurrin, sugars, and stay-green in ten diverse grain sorghum breeding lines, to evaluate the Pearson’s correlation coefficients (r) between these traits, and to determine entry-mean repeatability (R) for each of these traits. Of the compositional traits studied, we determined that leaf dhurrin had the highest correlation with the stay-green phenotypes (r = −0.62). We found that stay-green sorghum lines contained approximately 2–3 times as much dhurrin as non-stay-green lines, with B1778 containing the highest concentration of dhurrin (84.8 µg/cm²) and Tx7000 containing the least (20.9 µg/cm²). The differences between the environments for several of the traits were high, and all the traits examined had high repeatability (R = 0.89–0.92). These data demonstrate a relationship between leaf dhurrin and the stay-green phenotypes in sorghum, and further study will allow researchers to determine the causal effect that dhurrin has on post-flowering drought tolerance in sorghum. Full article

Several biogeochemical models have been applied to understand the potential effects of management practices on soil organic carbon (SOC) sequestration, crop growth, and yield. In this study, the denitrification and decomposition (DNDC) model was used to simulate soil SOC dynamics and harvested C-biomass in rice–wheat rotation under organic/inorganic fertilization with conventional tillage (CT) and reduced tillage (RT). Before calibration, DNDC underpredicted harvestable grain C-biomass of rice where percent difference (PD) varied from 29.22% to 42.14%, and over-simulated grain C-biomass of wheat where PD was −55.01% with 50% nitrogen–phosphorus–potassium (NPK) and 50% animal manure applied under the CT treatment. However, after calibration by adjusting default values of soil and crop parameters, DNDC simulated harvestable grain C-biomass of both crops very close to observed values (e.g., average PD ranged from −2.81% to −6.17%). DNDC also predicted the effects of nutrient management practices on grain C-biomass of rice/wheat under CT/RT using d-index (0.76 to 0.96) and the calculated root mean squared error (RMSE of 165.36 to 494.18 kg C ha⁻¹). DNDC simulated SOC trends for rice–wheat using measured values of several statistical indices. Regression analysis between modeled and observed SOC dynamics was significant with R² ranging from 0.35 to 0.46 (p < 0.01), and intercept ranging from 0.30 to 1.34 (p < 0.65). DNDC demonstrated that combined inorganic and organic fertilization may result in higher C-biomass and more SOC sequestration in rice–wheat systems. Full article

Cassava fresh root yield and dry matter content constitute major determinants of demand by end-users. Increased demand for the seeds of improved varieties will facilitate the development of a sustainable seed system. However, for wide acceptability, there is a need to continuously evaluate candidate varieties for stability across different agroecological zones. Participatory Demand Creation Trials (DCTs) were established to evaluate cassava varieties with farmers and processors utilizing the best agronomic practices. The multi-year DCTs were conducted in 20 environments (7 locations) during the 2016–2017, 2017–2018, 2018–2019, and 2019/2020 cropping seasons with two replications. The plot sizes were 320 m² with a spacing of 1 m × 0.8 m. The traits evaluated were Plant Vigor (PV), root number, fresh yield, dry yield, Dry Matter Content (DMC), and bundle estimation. The traits were subjected to a GGE biplot in R software to identify high-yielding and stable genotypes. Results obtained from the 20 environments showed that genotype (G), environment (E), and GXE interaction effects were significant (p < 0.01) for all the traits but PV. The heritability ranged from 56% (PV) to 96% (DMC). The average fresh yield t/ha ranged from 25.5 (IBA30572) to 35.4 (IBA980505). The DMC ranged from CR36/5 (36.1%) to IBA010040 (30.7%). The dry yield ranged from 8.8% (IBA30572) to 11.4 (IBA980505). Estimated bundles ranged from 13.5 (CR36-5) to 15.7 (IBA950289). Three varieties, IBA961632, TMEB419, and CR36/5, were identified as the most promising high dry matter content varieties for cassava processors and farmers in Nigeria, and genotype IBA961632 was the most stable. The study revealed greater genotypic effects than from the environment and high genetic advances. Full article

Wheat, the world’s most widely cultivated crop, is highly susceptible to Take-all disease caused by the soil ascomycete fungus Gaeumannomyces tritici (Gt). Crop rotations using different wheat cultivars can influence Take-all build up (TAB) in the following year’s wheat crop. The exact mechanism for this is unknown, but there may be a bacterial biocontrol component associated with TAB control. We cultured and characterised Pseudomonas isolates from the rhizosphere and endosphere of second-year field-grown wheat, in plots which, in the previous season, had been used to culture High-TAB cultivar Hereward or Low-TAB cultivar Cadenza. Analysis of two bacterial loci, wsm and fecB, showed that these genes were significantly and differentially associated with first-year wheat-planting regime: wsm was more abundant within the High-TAB Hereward-derived isolates, while fecB was more prevalent within the Low-TAB Cadenza-derived isolates. These findings were supported by a gyrB phylogenetic analysis and an in vitro Gt antagonism assay. These data show that the wheat cultivar grown in the first year plays an especially important role in the selection of the associated Pseudomonas spp. found in the second-season wheat-root environment, emphasising the importance of understanding agronomic practice in improving plant health and food security. Full article

Transplanted rice cultivation has caused groundwater depletion in several regions globally. Direct-seeded rice under aerobic conditions is a water-saving alternative. However, under aerobic conditions, iron in the soil is oxidized from the ferrous to ferric forms, which are not easily available to rice crops, resulting in iron-deficiency-induced chlorosis (IDIC) and causing significant reductions in yield. Cultivated rice accessions have limited variations in IDIC tolerance, while the wild Oryza germplasm could be a potential source of IDIC tolerance. In this study, 313 Oryza accessions were evaluated for IDIC tolerance at the tillering stage under aerobic conditions and 20 IDIC-tolerant lines were identified. The twenty lines showed no signs of chlorosis and had high levels of iron content and SPAD values, while the eight cultivated controls exhibited varying degrees of chlorosis symptoms and low levels of SPAD and iron content. To confirm their tolerance, the selected lines were evaluated again in a subsequent year, and they showed comparable levels of tolerance, indicating that these lines were efficient in iron uptake and utilization, resulting in maintained high chlorophyll and leaf area index. These accessions may be useful for developing IDIC-tolerant cultivars for aerobic rice cultivation and future studies of the molecular basis of IDIC tolerance. Full article