Genomic and Epigenetic Landscapes of Keloid Scarring: Ancestry–Dependent Insights and Therapeutic Implications—A Narrative Review
Abstract
1. Introduction
2. Materials and Methods
2.1. Study Design and Search Strategy
2.2. Eligibility Criteria
3. Synthesis of Genomic and Epigenetic Evidence
3.1. Study Selection
3.2. Genomic Basis and Epidemiological Patterns
3.3. Key Susceptibility Loci and Variants
3.3.1. Locus 1q41 (The DEIK-BMP2 Axis)
3.3.2. Locus 3q22.3 (FOXL2)
3.3.3. Locus 15q21.3 (NEDD4)
3.3.4. Emerging Variants
3.3.5. Integrated Perspective
3.4. Functional Convergence and Epigenetic Regulation
3.4.1. Pathway Convergence
3.4.2. Epigenetic Modulation
3.5. Susceptibility and Inheritance Models
4. Discussion
Limitations
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| GWAS | Genome-Wide Association Studies |
| SNP | Single-Nucleotide Polymorphism |
| ECM | Extracellular Matrix |
| TGF-β | Transforming Growth Factor Beta |
| SMAD | Mothers Against Decapentaplegic Homolog |
| NF-κB | Nuclear Factor Kappa B |
| BMP2 | Bone Morphogenetic Protein 2 |
| EGFR | Epidermal Growth Factor Receptor |
| lncRNA | Long Non-Coding RNA |
| HLA | Human Leukocyte Antigen |
| NEDD4 | Neuronal Precursor Cell Expressed Developmentally Down-Regulated 4 |
| TNFAIP | Tumor Necrosis Factor Alpha-Induced Protein 6 |
| MAPK | Mitogen-Activated Protein Kinase |
| JAK/ST | Janus Kinase/Signal Transducer and Activator of Transcription |
| LEPR | Leptin Receptor |
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| Study | SNP | Locus | Gene/Region Involved | Possible Affected Molecular Pathway | Population Studied |
|---|---|---|---|---|---|
| Nakashima, 2010 [21]; Zhu, 2013 [22] | rs873549 | 1q41 | Intergenic (DEIK–BMP2–POSTN/COMP) (a) | Enhancer in dermal fibroblasts; proliferation and ECM synthesis | Japanese, Han Chinese |
| Deng, 2023 [35] | rs1348270 | 1q41 | Enhancer in LD with rs873549 | ↓DEIK → ↑BMP2 → ↑POSTN/COMP | Han Chinese |
| Zhu, 2013 [22]; Lv, 2020 [36] | rs1442440 | 1q41 | Near BMP2/POSTN (LD with rs873549) | Epigenetic regulation of ECM and fibroblast proliferation | Han Chinese |
| Greene, 2025 [37] | rs10863683 | 1q | LINC01705 | Intergenic regulator; multi-ancestry replication | European, African, East Asian, Latin American |
| Greene, 2025 [37] | rs35383942 | 1q | PHLDA3 | Apoptosis; fibroblast expression | European, East Asian |
| Lu, 2015 [38]; Lu, 2018 [39] | rs1511412 | 3q22.3 | FOXL2 (b) | Differentiation/apoptosis; TGF-β/SMAD interaction; clinical severity | Japanese, Han Chinese |
| Nakashima, 2010 [21]; Lu, 2018 [39] | rs940187 | 3q22.3 | Non-coding region (TF/lncRNA) | Gene regulation, ECM; clinical severity | Japanese, Han Chinese |
| Greene, 2025 [37] | rs6906384 | 6q25.1 | TAB2 | Modulates TLR/IL-1 → NF-κB | Global |
| Nakashima, 2010 [21]; Zhu, 2013 [22]; Farag, 2020 [40] | rs8032158 | 15q21.3 | NEDD4 (intron) (c) | SMAD4 ubiquitination; TGF-β/SMAD; NF-κB/STAT3 | Japanese, Han Chinese, Egyptian |
| Yang, 2017 [41] | rs2303579/ rs2303580/ rs10518830 | 15q21.3 | NEDD4 (haplotype) | Missense variants and haplotypes of risk/protection | Han Chinese |
| Zhu, 2013 [22]; Lv, 2020 [36] | rs2271289 | 15q21.3 | FUT8 (intron) (c) | ECM protein glycosylation | Han Chinese |
| Greene, 2025 [37] | rs34647667 | 15q | ITGA11 | Integrins/fibrosis | African ≫ European |
| Liu, 2021 [42]; Liu, 2022 [8] | rs1137101/ rs1938496/ rs7555955 | 1p31.3 | LEPR | Leptin signalling and dermal inflammation | Han Chinese |
| Teng, 2015 [43]; Tang, 2023 [44] | rs183178644 | 6p25.3 | HUS1B (d) | DNA repair, abnormal cell proliferation | Han Chinese |
| Greene, 2025 [37] | rs2242026 | 7p14.1 | EPDR1 | Dermal ECM; skin expression | Global |
| Greene, 2025 [37] | rs2919386 | 8p12 | NRG1 | Epithelial–mesenchymal signalling | Global |
| Greene, 2025 [37] | rs6476838 | 9p24.2 | GLIS3 | Transcription factor; inflammation | Global |
| Teng, 2015 [43]; Tang, 2023 [44] | rs181924090 | 11p15.5 | SIRT3 (d) | Epigenetic regulation, oxidative stress, mitochondrial metabolism; fibroblast senescence | Han Chinese |
| Greene, 2025 [37] | rs76024540 | 11p15 | SLC22A18 | Imprinting; wound healing | African |
| Greene, 2025 [37] | rs686722 | 11p15.5 | LSP1 | Cell migration, cytoskeleton | Global |
| Teng, 2015 [43]; Tang, 2023 [44] | rs151091483 | 17p13.1 | MYH8 (d) | Fibroblast migration and contractility | Han Chinese |
| Zhong, 2024 [45] | TNFAIP6 | 2q23 (functional) | Hyaluronan-binding protein | ↓ in keloids; AUC ~1.0; ECM and inflammation role | Post-burn cohorts (China) |
| Santos-Cortez, 2017 [46] | ASAH1 | 8q23.3–p21.3 | Acid ceramidase | Sphingolipid metabolism | Yoruba (Nigeria) |
| Han, 2014 [47] | ADAM33 | 20q13 | Metalloproteinase | ECM remodelling | Han Chinese |
| Marneros, 2004 [20] | EGFR | 7p11 | EGFR (candidate, linkage) (e) | Fibroblast proliferation | African American family |
| Brown, 2008 [48]; Ashcroft, 2011 [49] | HLA-DRB1*15, DQA1/DQB1 | 6p21.3 | HLA class II | Adaptive immune response; ancestry-dependent effect | Caucasian (+), Afro-Caribbean (–) |
| Velez-Edwards, 2014 [50] | MYO1E/MYO7A | — | Actin motor proteins | Fibroblast adhesion/migration | African American |
| Zhong, 2024 [45] | IGFBP6 | — | Diagnostic biomarker | ↓ in keloids vs hypertrophic scars; AUC ~0.75 | China |
| Liang, 2015 [26] | lncRNAs (e.g., CACNA1G-AS1) | — | Differential lncRNAs | ECM–receptor interaction, Ca2+ signalling, focal adhesion | Han Chinese |
| Gene/Pathway | Involved Axis | Main Function | Effect in Keloids |
|---|---|---|---|
| TGFBR2 | TGF-β/SMAD | SMAD-activating receptor promoting collagen synthesis | Excessive fibrotic activation |
| NEDD4 | TGF-β/SMAD | Ubiquitination of SMAD4 | Amplifies profibrotic signalling |
| DEIK (1q41) | BMP2 pathway | Repressor of BMP2 and fibrosis regulator | ↓DEIK → ↑BMP2 → fibrosis |
| BMP2 | BMP2 (TGF-β superfamily) | Growth factor promoting fibrosis and ECM deposition | Overexpressed in keloid fibroblasts |
| POSTN | ECM | Collagen adhesion and remodelling | Overexpression linked to stiffness and keloid volume |
| COMP | ECM | ECM organisation | ↑ ECM accumulation |
| SDC1 | ECM/signalling | Transmembrane proteoglycan | ↑ Fibroblast proliferation and ECM synthesis |
| ATF3 | TGF-β/SMAD | Stress-induced transcription factor | ↑ Collagen production, proliferation, and apoptosis |
| lncRNAs | Epigenetic regulation | Long-range transcriptional regulation | Imbalance in lncRNAs (CAS1, DEIK-lncRNA) → fibroblast proliferation and profibrotic activation |
| Variant/Gene | Inheritance Model | Population(s) | Key Implication |
|---|---|---|---|
| rs873549/rs1348270 (1q41) | Autosomal dominant/additive | Japanese, Han Chinese | Strongly replicated susceptibility locus regulating the DEIK–BMP2 signaling axis |
| rs8032158 (NEDD4) | Autosomal dominant/additive (Asian); autosomal recessive (European) | Japanese, Han Chinese, Egyptian, European | Ancestry-dependent genetic effect with differential modulation of the TGF-β/SMAD pathway |
| IL6–572G>C (rs1800796) | Population-specific association | Egyptian (associated), Polish (not associated) | Illustrates ethnic heterogeneity in inflammatory genetic risk |
| ASAH1 (p.Leu401Pro) | Autosomal dominant, high penetrance | Yoruba (Nigeria) | Rare monogenic driver acting within a broader polygenic susceptibility background |
| HLA-DRB1*15 | Risk allele (non-Mendelian) | Caucasian (associated), Afro-Caribbean (not associated) | Ancestry-dependent immunogenetic contribution to keloid susceptibility |
| Global polygenic model | Multifactorial, additive | African, Asian, European | Combined effect of multiple low-effect common variants with epigenetic modulation |
| Pathway/Molecular Mechanism | African Ancestry | Asian Ancestry | European Ancestry | Latin American (Admixed) * |
|---|---|---|---|---|
| BMP Signaling & ECM (Locus 1q41) | Replicated association | Strong replicated association | No consistent association | ± Limited data |
| Functional Impact (1q41 Axis) | ↑ ECM-related pathways | ↑ ECM overproduction | Not demonstrated | Unknown |
| TGF-β/SMAD Signaling (Locus 15q21.3) | Dominant/additive models | Dominant models | Recessive or weak effect | ± Not evaluated |
| Inflammatory Signaling (IL-6 Variants) | Positive association (Egyptian cohorts) | ± Variable evidence | No association | Not studied |
| Epigenetic Regulation | Strong (DNA methylation) | Strong | Present | ± Largely unexplored |
| Dominant Pathogenic Mechanism | Inflammatory–fibrotic balance | Fibroblast hyperactivation | Limited molecular signal | Admixture-dependent |
| Clinical Phenotype | High susceptibility, recurrence | High susceptibility, recurrence | Lower prevalence | Unknown risk stratification |
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Llanos-Rodríguez, J.F.; Malvaez, A.D.D.L.F.; Jiménez-Osorio, A.S.; López-Hernández, L.B.; Solares-Tlapechco, J.; Marín, G.; Castillo-Rangel, C.; Zarate-Calderon, C.; Rodríguez-Arellano, M.E. Genomic and Epigenetic Landscapes of Keloid Scarring: Ancestry–Dependent Insights and Therapeutic Implications—A Narrative Review. Cosmetics 2026, 13, 70. https://doi.org/10.3390/cosmetics13020070
Llanos-Rodríguez JF, Malvaez ADDLF, Jiménez-Osorio AS, López-Hernández LB, Solares-Tlapechco J, Marín G, Castillo-Rangel C, Zarate-Calderon C, Rodríguez-Arellano ME. Genomic and Epigenetic Landscapes of Keloid Scarring: Ancestry–Dependent Insights and Therapeutic Implications—A Narrative Review. Cosmetics. 2026; 13(2):70. https://doi.org/10.3390/cosmetics13020070
Chicago/Turabian StyleLlanos-Rodríguez, José Fernando, Alan David De La Fuente Malvaez, Angélica Saraí Jiménez-Osorio, Luz Berenice López-Hernández, Jacqueline Solares-Tlapechco, Gerardo Marín, Carlos Castillo-Rangel, Cristofer Zarate-Calderon, and Martha Eunice Rodríguez-Arellano. 2026. "Genomic and Epigenetic Landscapes of Keloid Scarring: Ancestry–Dependent Insights and Therapeutic Implications—A Narrative Review" Cosmetics 13, no. 2: 70. https://doi.org/10.3390/cosmetics13020070
APA StyleLlanos-Rodríguez, J. F., Malvaez, A. D. D. L. F., Jiménez-Osorio, A. S., López-Hernández, L. B., Solares-Tlapechco, J., Marín, G., Castillo-Rangel, C., Zarate-Calderon, C., & Rodríguez-Arellano, M. E. (2026). Genomic and Epigenetic Landscapes of Keloid Scarring: Ancestry–Dependent Insights and Therapeutic Implications—A Narrative Review. Cosmetics, 13(2), 70. https://doi.org/10.3390/cosmetics13020070

