Spatial Diagnosis of Climatic and Landscape Controls on Forest Leaf Area Index Across China Using Interpretable Machine Learning
Abstract
1. Introduction
2. Materials and Methods
2.1. Study Area
2.2. Climate Zoning and Environmental Stratification
2.3. Data and Preprocessing
- (1)
- Vegetation datasets
- (2)
- Topographic factors
- (3)
- Anthropogenic indicators
- (4)
- Data harmonization
2.4. Methods
2.4.1. LAI Preprocessing and National Averaging
2.4.2. Predictor Selection and Spatiotemporal Changes
2.4.3. Machine-Learning Modelling of LAI-Environment Relationships
2.4.4. Model Interpretation Using SHAP Values
2.4.5. Nonlinear Association Assessment Using the Chatterjee Correlation Coefficient
Spatial Heterogeneity Assessment Using GeoDetector
3. Results
3.1. Predictor Selection and Multicollinearity Assessment
3.2. Spatiotemporal Patterns of LAI and Associated Environmental Variables
3.3. Model Performance and Selection
3.4. Drivers’ Relative Contributions and Response Patterns
3.4.1. SHAP-Based Feature Importance
3.4.2. Nonlinear Univariate Response Patterns
3.5. Interaction Patterns and Moisture-Fragmentation Coupling
3.6. Spatial Divergence of Dominant Association Patterns
3.6.1. Precipitation-Dominated Associations in Humid Regions
3.6.2. Fragmentation-Associated Patterns in Arid and Semi-Arid Regions
3.6.3. Topographic and Thermal Associations on the Qinghai-Tibet Plateau
3.6.4. Spatial Signatures of Anthropogenic Activity
4. Discussion
4.1. Interpretable Diagnostics of Large-Scale LAI Variability
4.2. Climatic Controls and Nonlinear Saturation Effects
4.3. Landscape Structure as a Climate-Conditioned Constraint
4.4. Interaction Effects and Spatially Differentiated Control Regimes
4.5. Implications for Forest Cover Assessment and Ecological Effects
4.6. Limitations and Future Perspectives
5. Conclusions
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
Appendix A





References
- Fang, H.; Baret, F.; Plummer, S.; Schaepman-Strub, G. An Overview of Global Leaf Area Index (LAI): Methods, Products, Validation, and Applications. Rev. Geophys. 2019, 57, 739–799. [Google Scholar] [CrossRef]
- Peng, J.; Jiang, H.; Liu, Q.; Green, S.M.; Quine, T.A.; Liu, H.; Qiu, S.; Liu, Y.; Meersmans, J. Human Activity vs. Climate Change: Distinguishing Dominant Drivers on LAI Dynamics in Karst Region of Southwest China. Sci. Total Environ. 2021, 769, 144297. [Google Scholar] [CrossRef]
- Gavilán-Acuna, G.; Coops, N.C.; Tompalski, P.; Mena-Quijada, P.; Varhola, A.; Roeser, D.; Olmedo, G.F. Characterizing Annual Leaf Area Index Changes and Volume Growth Using ALS and Satellite Data in Forest Plantations. Sci. Remote Sens. 2024, 10, 100159. [Google Scholar] [CrossRef]
- Piao, S.; Wang, X.; Park, T.; Chen, C.; Lian, X.; He, Y.; Bjerke, J.W.; Chen, A.; Ciais, P.; Tømmervik, H.; et al. Characteristics, Drivers and Feedbacks of Global Greening. Nat. Rev. Earth Environ. 2019, 1, 14–27. [Google Scholar] [CrossRef]
- Zhang, Z.; Xin, Q.; Li, W. Machine Learning-Based Modeling of Vegetation Leaf Area Index and Gross Primary Productivity Across North America and Comparison With a Process-Based Model. J. Adv. Model. Earth Syst. 2021, 13, e2021MS002802. [Google Scholar] [CrossRef]
- Ryo, M. Explainable Artificial Intelligence and Interpretable Machine Learning for Agricultural Data Analysis. Artif. Intell. Agric. 2022, 6, 257–265. [Google Scholar] [CrossRef]
- Li, Y.; Zeng, H.; Xiong, J.; Miao, G. Influence of Topography on UAV LiDAR-Based LAI Estimation in Subtropical Mountainous Secondary Broadleaf Forests. Forests 2023, 15, 17. [Google Scholar] [CrossRef]
- Reichstein, M.; Camps-Valls, G.; Stevens, B.; Jung, M.; Denzler, J.; Carvalhais, N. Prabhat Deep Learning and Process Understanding for Data-Driven Earth System Science. Nature 2019, 566, 195–204. [Google Scholar] [CrossRef]
- Shapley, L.S. A Value for N-Person Games; RAND Corporation: Santa Monica, CA, USA, 1952. [Google Scholar]
- Wang, J.; Xu, C. Geodetector: Principle and Prospective. Dili Xuebao/Acta Geogr. Sin. 2017, 72, 116–134. [Google Scholar] [CrossRef]
- Wang, J.-F.; Zhang, T.-L.; Fu, B.-J. A Measure of Spatial Stratified Heterogeneity. Ecol. Indic. 2016, 67, 250–256. [Google Scholar] [CrossRef]
- Chatterjee, S. A New Coefficient of Correlation. J. Am. Stat. Assoc. 2021, 116, 2009–2022. [Google Scholar] [CrossRef]
- Ma, Y.; Wang, W.; Jin, S.; Li, H.; Liu, B.; Gong, W.; Fan, R.; Li, H. Spatiotemporal Variation of LAI in Different Vegetation Types and Its Response to Climate Change in China from 2001 to 2020. Ecol. Indic. 2023, 156, 111101. [Google Scholar] [CrossRef]
- Kottek, M.; Grieser, J.; Beck, C.; Rudolf, B.; Rubel, F. World Map of the Köppen-Geiger Climate Classification Updated. Meteorol. Z. 2006, 15, 259–263. [Google Scholar] [CrossRef]
- Sheng, K.; Li, R.; Chen, T.; Wang, L. Temporal and Spatial Variation Characteristics of Seasonal Differences in Extreme Precipitation in China Monsoon Region in the Last 40 Years. Water 2025, 17, 1672. [Google Scholar] [CrossRef]
- Liu, J.; Li, S.; Ouyang, Z.; Tam, C.; Chen, X. Ecological and Socioeconomic Effects of China’s Policies for Ecosystem Services. Proc. Natl. Acad. Sci. USA 2008, 105, 9477–9482. [Google Scholar] [CrossRef]
- Ma, J.; Li, J.; Wu, W.; Liu, J. Global Forest Fragmentation Change from 2000 to 2020. Nat. Commun. 2023, 14, 3752. [Google Scholar] [CrossRef] [PubMed]
- Xu, X.; Liu, H.; Jiao, F.; Gong, H.; Lin, Z. Nonlinear Relationship of Greening and Shifts from Greening to Browning in Vegetation with Nature and Human Factors along the Silk Road Economic Belt. Sci. Total Environ. 2021, 766, 142553. [Google Scholar] [CrossRef]
- Schwartz, N.B.; Budsock, A.M.; Uriarte, M. Fragmentation, Forest Structure, and Topography Modulate Impacts of Drought in a Tropical Forest Landscape. Ecology 2019, 100, e02677. [Google Scholar] [CrossRef] [PubMed]
- Lexer, M.J.; Hönninger, K. A Modified 3D-Patch Model for Spatially Explicit Simulation of Vegetation Composition in Heterogeneous Landscapes. Ecol. Manag. 2001, 144, 43–65. [Google Scholar] [CrossRef]
- Xu, Y.; Dai, Q.-Y.; Zou, B.; Xu, M.; Feng, Y.-X. Tracing Climatic and Human Disturbance in Diverse Vegetation Zones in China: Over 20 Years of NDVI Observations. Ecol. Indic. 2023, 156, 111170. [Google Scholar] [CrossRef]
- Intergovernmental Panel on Climate Change (IPCC). Climate Change 2022—Impacts, Adaptation and Vulnerability; Cambridge University Press: Cambridge, UK, 2023; ISBN 9781009325844. [Google Scholar]
- Ma, H.; Liang, S. Development of the GLASS 250-m Leaf Area Index Product (Version 6) from MODIS Data Using the Bidirectional LSTM Deep Learning Model. Remote Sens. Environ. 2022, 273, 112985. [Google Scholar] [CrossRef]
- Peng, S.; Ding, Y.; Liu, W.; Li, Z. 1 Km Monthly Temperature and Precipitation Dataset for China from 1901 to 2017. Earth Syst. Sci. Data 2019, 11, 1931–1946. [Google Scholar] [CrossRef]
- He, J.; Yang, K.; Li, X.; Tang, W.; Shao, C.; Jiang, Y.; Ding, B. China Meteorological Forcing Dataset v2.0 (1951–2024); National Tibetan Plateau Data Center: Beijing, China, 2025. [Google Scholar]
- Zheng, C.; Jia, L.; Zhao, T. A 21-Year Dataset (2000–2020) of Gap-Free Global Daily Surface Soil Moisture at 1-Km Grid Resolution. Sci. Data 2023, 10, 139. [Google Scholar] [CrossRef]
- Farr, T.G.; Rosen, P.A.; Caro, E.; Crippen, R.; Duren, R.; Hensley, S.; Kobrick, M.; Paller, M.; Rodriguez, E.; Roth, L.; et al. The Shuttle Radar Topography Mission. Rev. Geophys. 2007, 1–33. [Google Scholar] [CrossRef]
- Li, X.; Zhou, Y. A Stepwise Calibration of Global DMSP/OLS Stable Nighttime Light Data (1992–2013). Remote Sens. 2017, 9, 637. [Google Scholar] [CrossRef]
- Yang, J.; Huang, X. The 30 m Annual Land Cover Dataset and Its Dynamics in China from 1990 to 2019. Earth Syst. Sci. Data 2021, 13, 3907–3925. [Google Scholar] [CrossRef]
- Dong, Y.; Wang, X.; Su, W. A 1 Km Soil Organic Carbon Density Dataset with Depth of 20 cm and 100 cm from 1985 to 2020 in China. Earth Syst. Sci. Data Discuss. 2026, 18, 759–777. [Google Scholar] [CrossRef]
- Ling, Z.; Yingyi, H.; Yanbo, Z.; Tao, C. ChinaMet: A High-Resolution Multi-Element Meteorological Driving Dataset for China via Multi-Source Data Fusion; National Cryosphere Desert Data Center: Lanzhou, China, 2025. [Google Scholar]
- O’brien, R.M. A Caution Regarding Rules of Thumb for Variance Inflation Factors. Qual. Quant. 2007, 41, 673–690. [Google Scholar] [CrossRef]
- Theil, H. A Rank-Invariant Method of Linear and Polynomial Regression Analysis, 3; Confidence Regions for the Parameters of Polynomial Regression Equations. In Indagationes Mathematicae; North-Holland Publishing Company: Amsterdam, The Netherlands, 1950; Volume 1. [Google Scholar]
- Sen, P.K. Estimates of the Regression Coefficient Based on Kendall’s Tau. J. Am. Stat. Assoc. 1968, 63, 1379–1389. [Google Scholar] [CrossRef]
- Theil, H. A Rank-Invariant Method of Linear and Polynomial Regression Analysis. In Henri Theil’s Contributions to Economics and Econometrics; Springer: Berlin/Heidelberg, Germany, 1992; pp. 345–381. [Google Scholar]
- Mann, H.B. Nonparametric Tests Against Trend. Econometrica 1945, 13, 245. [Google Scholar] [CrossRef]
- Breiman, L.; Friedman, J.H.; Olshen, R.A.; Stone, C.J. Classification and Regression Trees; Routledge: London, UK, 2017; ISBN 9781315139470. [Google Scholar]
- Chen, T.; Guestrin, C. XGBoost: A Scalable Tree Boosting System. In Proceedings of the KDD’16: The 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, San Francisco, CA, USA, 13–17 August 2016; pp. 785–794. [Google Scholar]
- Zhu, C.; Wang, G.; Shao, Y.; Dai, W.; Liu, Q.; Wang, S.; Costa, A.C.; Cabral, P. Disentangling Gross Primary Productivity Drivers of Forested Areas in China and Its Climate Zones from 1990 to 2018. J. Clean. Prod. 2025, 509, 145616. [Google Scholar] [CrossRef]
- Fu, B.; Wang, S.; Liu, Y.; Liu, J.; Liang, W.; Miao, C. Hydrogeomorphic Ecosystem Responses to Natural and Anthropogenic Changes in the Loess Plateau of China. Annu. Rev. Earth Planet. Sci. 2017, 45, 223–243. [Google Scholar] [CrossRef]
- Andrén, H.; Andren, H. Effects of Habitat Fragmentation on Birds and Mammals in Landscapes with Different Proportions of Suitable Habitat: A Review. Oikos 1994, 71, 355. [Google Scholar] [CrossRef]
- Haddad, N.M.; Brudvig, L.A.; Clobert, J.; Davies, K.F.; Gonzalez, A.; Holt, R.D.; Lovejoy, T.E.; Sexton, J.O.; Austin, M.P.; Collins, C.D.; et al. Habitat Fragmentation and Its Lasting Impact on Earth’s Ecosystems. Sci. Adv. 2015, 1, e1500052. [Google Scholar] [CrossRef]
- Ganem, K.A.; Xue, Y.; Dutra, A.C.; Pareyn, F.G.C.; Shimabukuro, Y.E. From Rainforests to Drylands: A Context-Specific Framework for Mapping Land Use and Land Cover Dynamics in Northeast Brazil (2000–2020). GIsci. Remote Sens. 2025, 62, 2510140. [Google Scholar] [CrossRef]
- Briant, G.; Gond, V.; Laurance, S.G.W. Habitat Fragmentation and the Desiccation of Forest Canopies: A Case Study from Eastern Amazonia. Biol. Conserv. 2010, 143, 2763–2769. [Google Scholar] [CrossRef]
- Asbjornsen, H.; Ashton, M.S.; Vogt, D.J.; Palacios, S. Effects of Habitat Fragmentation on the Buffering Capacity of Edge Environments in a Seasonally Dry Tropical Oak Forest Ecosystem in Oaxaca, Mexico. Agric. Ecosyst. Environ. 2004, 103, 481–495. [Google Scholar] [CrossRef]
- Prieto, I.; Armas, C.; Pugnaire, F.I. Water Release through Plant Roots: New Insights into Its Consequences at the Plant and Ecosystem Level. New Phytol. 2012, 193, 830–841. [Google Scholar] [CrossRef] [PubMed]
- Peres, C.A.; Emilio, T.; Schietti, J.; Desmoulière, S.J.M.; Levi, T. Dispersal Limitation Induces Long-Term Biomass Collapse in Overhunted Amazonian Forests. Proc. Natl. Acad. Sci. USA 2016, 113, 892–897. [Google Scholar] [CrossRef] [PubMed]
- Huang, C.; Zhuang, Q.; Meng, X.; Guo, H.; Han, J. An Improved Nightlight Threshold Method for Revealing the Spatiotemporal Dynamics and Driving Forces of Urban Expansion in China. J. Environ. Manag. 2021, 289, 112574. [Google Scholar] [CrossRef] [PubMed]
- Qian, D.; Du, Y.; Li, Q.; Guo, X.; Fan, B.; Cao, G. Impacts of Alpine Shrub-Meadow Degradation on Its Ecosystem Services and Spatial Patterns in Qinghai-Tibetan Plateau. Ecol. Indic. 2022, 135, 108541. [Google Scholar] [CrossRef]
- Luo, Q.; Li, S.; Wang, H.; Cheng, H. Mapping Human Pressure for Nature Conservation: A Review. Remote Sens. 2024, 16, 3866. [Google Scholar] [CrossRef]
- White, M.A.; Thornton, P.E.; Running, S.W.; Nemani, R.R. Parameterization and Sensitivity Analysis of the BIOME–BGC Terrestrial Ecosystem Model: Net Primary Production Controls. Earth Interact. 2000, 4, 1–85. [Google Scholar] [CrossRef]
- Smith, B.; Prentice, I.C.; Sykes, M.T. Representation of Vegetation Dynamics in the Modelling of Terrestrial Ecosystems: Comparing Two Contrasting Approaches within European Climate Space. Glob. Ecol. Biogeogr. 2001, 10, 621–637. [Google Scholar] [CrossRef]






| Dataset | Spatial Resolution | Original Temporal Coverage | Units | Role in Analysis | Source |
|---|---|---|---|---|---|
| Leaf Area Index (GLASS V6) | 500 m | 2000–2024 | m2 m−2 | Used in final model | [23] |
| Precipitation | 0.00833° | 1901–2023 | mm | Used in final model | [24] |
| Air temperature | 0.00833° | 1901–2023 | °C | Used in final model | [24] |
| Downward shortwave radiation | 0.1° | 1951–2020 | W m−2 | Used in final model | [25] |
| Soil moisture | 0.00833° | 2000–2020 | m3 m−3 | Used in final model | [26] |
| Nighttime light intensity | 0.1° | 1992–2023 | – | Used in final model | [28] |
| Digital Elevation Model (SRTM) | 90 m | Static | m | Used in final model | [27] |
| Land cover (CLCD) | 30 m | 1985–2023 | – | Used for derivation | [29] |
| Forest Fragmentation Index (FFI) | 30 m (derived) | 2000–2020 | – | Used in final model | [17] |
| Soil organic carbon | 1 km | 1985–2020 | kg C m−2 | Screened, excluded (VIF) | [30] |
| Wind speed | 0.1° | 1980–2022 | m s−1 | Screened, excluded (VIF) | [31] |
| Surface pressure | 0.1° | 1980–2022 | hPa | Screened, excluded (VIF) | [31] |
| Relative humidity | 0.1° | 1980–2022 | % | Screened, excluded (VIF) | [31] |
| Climate zones (Köppen-Geiger) | – | Static | – | Stratification variable | [14] |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Mu, Y.; Wang, G.; Zhu, C.; Cabral, P. Spatial Diagnosis of Climatic and Landscape Controls on Forest Leaf Area Index Across China Using Interpretable Machine Learning. Forests 2026, 17, 203. https://doi.org/10.3390/f17020203
Mu Y, Wang G, Zhu C, Cabral P. Spatial Diagnosis of Climatic and Landscape Controls on Forest Leaf Area Index Across China Using Interpretable Machine Learning. Forests. 2026; 17(2):203. https://doi.org/10.3390/f17020203
Chicago/Turabian StyleMu, Yiyang, Guojie Wang, Chenxi Zhu, and Pedro Cabral. 2026. "Spatial Diagnosis of Climatic and Landscape Controls on Forest Leaf Area Index Across China Using Interpretable Machine Learning" Forests 17, no. 2: 203. https://doi.org/10.3390/f17020203
APA StyleMu, Y., Wang, G., Zhu, C., & Cabral, P. (2026). Spatial Diagnosis of Climatic and Landscape Controls on Forest Leaf Area Index Across China Using Interpretable Machine Learning. Forests, 17(2), 203. https://doi.org/10.3390/f17020203

