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Search Results (279)

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22 pages, 2097 KB  
Article
At Risk While on the Move—Mobility Vulnerability of Individuals and Groups in Disaster Risk Situations
by Alexander Fekete
Geographies 2025, 5(4), 56; https://doi.org/10.3390/geographies5040056 (registering DOI) - 6 Oct 2025
Abstract
Vulnerability is often analysed as a static condition of residents at a location, exposed to disaster and other risks. Studies on individual aspects of mobility and vulnerability exist, but comprehensive studies or guiding frameworks are lacking. The paper’s unique contribution compared to existing [...] Read more.
Vulnerability is often analysed as a static condition of residents at a location, exposed to disaster and other risks. Studies on individual aspects of mobility and vulnerability exist, but comprehensive studies or guiding frameworks are lacking. The paper’s unique contribution compared to existing vulnerability models lies in emphasising vulnerability not only at fixed places, but also during transit, movement, and temporary phases. This paper highlights the current state of research on mobility vulnerability within disaster risk contexts. Through a systematic literature review, the study discovers a lack of research analysing specific vulnerabilities during mobility. Additionally, existing vulnerability frameworks are improved by incorporating (i) disaster risk and impact scenarios, (ii) different types of movements and mobilities linked to disaster risk situations, (iii) multiple localities, modalities, and temporalities, as well as multiple risks during sequences of movement and stationary phases, (iv) daily and occasional hazards, and (v) emic and etic perspectives on vulnerability. The findings of this study aim to inform future research on risk and vulnerability, supporting more effective responses amidst the changing dynamics of disaster situations. Full article
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18 pages, 1366 KB  
Article
One-Week Elderberry Juice Intervention Promotes Metabolic Flexibility in the Transcriptome of Overweight Adults During a Meal Challenge
by Christy Teets, Andrea J. Etter and Patrick M. Solverson
Nutrients 2025, 17(19), 3142; https://doi.org/10.3390/nu17193142 - 1 Oct 2025
Abstract
Background: Metabolic flexibility, the ability to efficiently switch between fuel sources in response to changing nutrient availability and energy demands, is recognized as a key determinant of metabolic health. In a recent randomized controlled human feeding trial, overweight individuals receiving American black elderberry [...] Read more.
Background: Metabolic flexibility, the ability to efficiently switch between fuel sources in response to changing nutrient availability and energy demands, is recognized as a key determinant of metabolic health. In a recent randomized controlled human feeding trial, overweight individuals receiving American black elderberry juice (EBJ) demonstrated improvements in multiple clinical indices of metabolic flexibility, but the mechanisms of action were unexplored. The objective of this study was to utilize RNA sequencing to examine how EBJ modulates the transcriptional response to fasting and feeding, focusing on pathways related to metabolic flexibility. Methods: Overweight or obese adults (BMI > 25 kg/m2) without chronic illnesses were randomized to a 5-week crossover study protocol with two 1-week periods of twice-daily EBJ or placebo (PL) separated by a washout period. RNA sequencing was performed on peripheral blood mononuclear cells from 10 participants to assess transcriptomic responses collected at fasting (pre-meal) and postprandial (120 min post-meal) states during a meal-challenge test. Results: The fasted-to-fed transition for EBJ showed 234 differentially expressed genes following EBJ consumption compared to 59 genes following PL, with 44 genes shared between interventions. EBJ supplementation showed significantly higher enrichment of several metabolic pathways including insulin, FoxO, and PI3K–Akt signaling. KEGG pathway analysis showed 27 significant pathways related to metabolic flexibility compared to 7 for PL. Conclusions: Our findings indicate that short-term elderberry juice consumption may promote metabolic flexibility in overweight adults. Full article
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25 pages, 562 KB  
Article
VeriFlow: A Framework for the Static Verification of Web Application Access Control via Policy-Graph Consistency
by Tao Zhang, Fuzhong Hao, Yunfan Wang, Bo Zhang and Guangwei Xie
Electronics 2025, 14(18), 3742; https://doi.org/10.3390/electronics14183742 - 22 Sep 2025
Viewed by 233
Abstract
The evolution of industrial automation toward Industry 3.0 and 4.0 has driven the emergence of Industrial Edge-Cloud Platforms, which increasingly depend on web interfaces for managing and monitoring critical operational technology. This convergence introduces significant security risks, particularly from Broken Access Control (BAC)—a [...] Read more.
The evolution of industrial automation toward Industry 3.0 and 4.0 has driven the emergence of Industrial Edge-Cloud Platforms, which increasingly depend on web interfaces for managing and monitoring critical operational technology. This convergence introduces significant security risks, particularly from Broken Access Control (BAC)—a vulnerability consistently ranked as the top web application risk by the Open Web Application Security Project (OWASP). BAC flaws in industrial contexts can lead not only to data breaches but also to disruptions of physical processes. To address this urgent need for robust web-layer defense, this paper presents VeriFlow, a static verification framework for access control in web applications. VeriFlow reformulates access control verification as a consistency problem between two core artifacts: (1) a Formal Access Control Policy (P), which declaratively defines intended permissions, and (2) a Navigational Graph, which models all user-driven UI state transitions. By annotating the graph with policy P, VeriFlow verifies a novel Path-Permission Safety property, ensuring that no sequence of legitimate UI interactions can lead a user from an authorized state to an unauthorized one. A key technical contribution is a static analysis method capable of extracting navigational graphs directly from the JavaScript bundles of Single-Page Applications (SPAs), circumventing the limitations of traditional dynamic crawlers. In empirical evaluations, VeriFlow outperformed baseline tools in vulnerability detection, demonstrating its potential to deliver strong security guarantees that are provable within its abstracted navigational model. By formally checking policy-graph consistency, it systematically addresses a class of vulnerabilities often missed by dynamic tools, though its effectiveness is subject to the model-reality gap inherent in static analysis. Full article
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35 pages, 6812 KB  
Article
Modeling Transient Waveforms of Offshore Wind Power AC/DC Transmission Faults: Unveiling Symmetry–Asymmetry Mechanisms
by Yi Zheng, Qi You, Yujie Chen, Haoming Guo, Hao Yang, Shuang Liang and Xin Pan
Symmetry 2025, 17(9), 1551; https://doi.org/10.3390/sym17091551 - 16 Sep 2025
Viewed by 261
Abstract
This paper aims to unveil the symmetry–asymmetry transition mechanisms in transient fault waveforms of offshore wind power AC/DC transmission systems, addressing the critical limitation of traditional simulation methods of the fact that they cannot characterize the dynamic evolution of system symmetry, such as [...] Read more.
This paper aims to unveil the symmetry–asymmetry transition mechanisms in transient fault waveforms of offshore wind power AC/DC transmission systems, addressing the critical limitation of traditional simulation methods of the fact that they cannot characterize the dynamic evolution of system symmetry, such as static impedance adjustment failing to capture transient asymmetry caused by parameter imbalance or converter control. It proposes a fault waveform simulation approach integrating mechanism analysis, scenario extraction, and model optimization. Key contributions include clarifying the quantitative links between key system parameters like submarine cable capacitance and inductance and symmetry–asymmetry characteristics, defining the transient decay rate oscillation frequency and voltage peak as core indicators to quantify symmetry breaking intensity; classifying typical fault scenarios into a symmetry-breaking type with synchronous three-phase imbalance and a persistent asymmetry type with zero-sequence and negative-sequence distortion based on symmetry evolution dynamics and revising grid-connection test indices such as lowering the low-voltage ride-through threshold and specifying the voltage type for different test objectives; and constructing a simplified embedded RLC second-order model with symmetry–asymmetry constraints to reproduce the whole process of symmetric steady state–fault symmetry breaking–recovery symmetry reconstruction. Simulation results verify the method’s effectiveness, with symmetry indicator reproduction errors ≤ 5% and asymmetric feature fitting goodness R2 ≥ 0.92, which confirms that the method can effectively reveal the symmetry–asymmetry mechanisms of offshore wind power fault transients and provides reliable technical support for improving offshore wind power fault simulation accuracy and grid-connection test reliability, laying a theoretical basis for the grid-connection testing of offshore wind turbines and promoting the stable operation of offshore wind power systems. Full article
(This article belongs to the Section Engineering and Materials)
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17 pages, 2625 KB  
Article
Improved Active Disturbance Rejection Speed Tracking Control for High-Speed Trains Based on SBWO Algorithm
by Chuanfang Xu, Chengyu Zhang, Mingxia Xu, Jiaqing Chen, Longda Wang and Zhaoyu Han
Algorithms 2025, 18(9), 566; https://doi.org/10.3390/a18090566 - 8 Sep 2025
Viewed by 330
Abstract
To address the problems of random noise interference, inadequate disturbance estimation and compensation, and the difficulty in controller parameter tuning in speed tracking control of high-speed trains, an improved Active Disturbance Rejection Control (ADRC) strategy combined with a Sobol-based Black Widow Optimization (SBWO) [...] Read more.
To address the problems of random noise interference, inadequate disturbance estimation and compensation, and the difficulty in controller parameter tuning in speed tracking control of high-speed trains, an improved Active Disturbance Rejection Control (ADRC) strategy combined with a Sobol-based Black Widow Optimization (SBWO) algorithm is proposed. An improved Tracking Differentiator (TD) is adopted by integrating a novel optimal control synthesis function with a phase compensator to suppress input noise and ensure a smooth transition process. A novel Extended State Observer (ESO) using a nonlinear saturation function is designed to improve the observation accuracy and decrease chattering. An enhanced Nonlinear State Error Feedback (NLSEF) law that incorporates an error integral and adaptive parameter update laws is developed to reduce steady-state error and achieve self-tuned proportional and derivative gains. A feedforward compensation term is added to provide real-time dynamic compensation for ESO estimation errors. Finally, an enhanced Black Widow Optimization (BWO) algorithm, which initializes its population with Sobol sequences to improve its global search capability, is employed for parameter optimization. The simulation results demonstrate that compared with the control methods based on Proportional–Integral–Derivative (PID) control and conventional ADRC, the proposed strategy achieves higher steady-state tracking accuracy, better adaptability to dynamic operating conditions, stronger anti-disturbance ability, and more precise stopping precision. Full article
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24 pages, 43654 KB  
Article
Analysis of Microarray and Single-Cell RNA-Seq Finds Gene Co-Expression and Tumor Environment Associated with Extracellular Matrix in Epithelial–Mesenchymal Transition in Prostate Cancer
by Ali Shakeri Abroudi, Mahtab Mashhouri Moghaddam, Danial Hashemi Karoii, Melika Djamali, Hossein Azizi and Thomas Skutella
Int. J. Mol. Sci. 2025, 26(17), 8575; https://doi.org/10.3390/ijms26178575 - 3 Sep 2025
Viewed by 580
Abstract
A complex and gradual process, the epithelial–mesenchymal transition (EMT) occurs both during embryonic development and tumor progression. Cells undergo a transition from an epithelial to a mesenchymal state throughout this process. More and more evidence points to EMT as a cause of increased [...] Read more.
A complex and gradual process, the epithelial–mesenchymal transition (EMT) occurs both during embryonic development and tumor progression. Cells undergo a transition from an epithelial to a mesenchymal state throughout this process. More and more evidence points to EMT as a cause of increased metastatic spread of prostate cancer (PCa), along with stemness enhancement and therapy resistance. Here, we used bioinformatic methods to analyze gene expression microarray data, single-cell RNA sequencing, oncogenes, and tumor suppressor genes (TSGs) in order to reconstruct the network of differentially expressed genes (DEGs) involved in the epithelial–mesenchymal transition with PCa. No prior study has documented this sort of analysis. We next validated our results using data from the Cancer Genome Atlas (TCGA), which included microarray and single-cell RNA sequencing. Potentially useful in PCa diagnosis and treatment are extracellular matrix in epithelial–mesenchymal transition genes, including ITGBL1, DSC3, COL4A6, ANGPT1, ARMCX1, MICAL2, and EPHA5. In this study, we aimed to shed light on the molecular characteristics and pathways of DEGs in PCa, as well as to identify possible biomarkers that are important in the development and advancement of this cancer. These insights have important implications for understanding prostate cancer progression and for the development of therapeutic strategies targeting ECM-mediated pathways. Full article
(This article belongs to the Section Molecular Oncology)
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20 pages, 358 KB  
Article
Ideal (I2) Convergence in Fuzzy Paranormed Spaces for Practical Stability of Discrete-Time Fuzzy Control Systems Under Lacunary Measurements
by Muhammed Recai Türkmen and Hasan Öğünmez
Axioms 2025, 14(9), 663; https://doi.org/10.3390/axioms14090663 - 29 Aug 2025
Viewed by 405
Abstract
We investigate the stability of linear discrete-time control systems with a fuzzy logic feedback under sporadic sensor data loss. In our framework, each state measurement is a fuzzy number, and occasional “packet dropouts” are modeled by a lacunary subsequence of missing readings. We [...] Read more.
We investigate the stability of linear discrete-time control systems with a fuzzy logic feedback under sporadic sensor data loss. In our framework, each state measurement is a fuzzy number, and occasional “packet dropouts” are modeled by a lacunary subsequence of missing readings. We introduce a novel mathematical approach using lacunary statistical convergence in fuzzy paranormed spaces to analyze such systems. Specifically, we treat the sequence of fuzzy measurements as a double sequence (indexed by time and state component) and consider an admissible ideal of “negligible” index sets that includes the missing–data pattern. Using the concept of ideal fuzzy—paranorm convergence (I-fp convergence), we formalize a lacunary statistical consistency condition on the fuzzy measurements. We prove that if the closed-loop matrix ABK is Schur stable (i.e., ABK<1) in the absence of dropouts, then under the lacunary statistical consistency condition, the controlled system is practically stable despite intermittent measurement losses. In other words, for any desired tolerance, the state eventually remains within that bound (though not necessarily converging to zero). Our result yields an explicit, non-probabilistic (distribution-free) analytical criterion for robustness to sensor dropouts, without requiring packet-loss probabilities or Markov transition parameters. This work merges abstract convergence theory with control application: it extends statistical and ideal convergence to double sequences in fuzzy normed spaces and applies it to ensure stability of a networked fuzzy control system. Full article
(This article belongs to the Special Issue Mathematical Modeling and Control: Theory and Applications)
27 pages, 3015 KB  
Article
Effects of Asprosin and Role of TLR4 as a Biomarker in Endometrial Cancer
by Rebecca Karkia, Cristina Sisu, Sayeh Saravi, Ioannis Kyrou, Harpal S. Randeva, Jayanta Chatterjee and Emmanouil Karteris
Molecules 2025, 30(16), 3410; https://doi.org/10.3390/molecules30163410 - 18 Aug 2025
Viewed by 794
Abstract
(1) Background: Following the discovery of the adipokine/hormone asprosin, a substantial amount of research has provided evidence for its role in the regulation of glucose homeostasis, as well as appetite, and insulin sensitivity. Its levels are dysregulated in certain disease states, including breast [...] Read more.
(1) Background: Following the discovery of the adipokine/hormone asprosin, a substantial amount of research has provided evidence for its role in the regulation of glucose homeostasis, as well as appetite, and insulin sensitivity. Its levels are dysregulated in certain disease states, including breast cancer. To date, little is known about its role in endometrial cancer (EC). The present study investigated the effects of asprosin on the transcriptome of the Ishikawa and NOU-1 EC cell lines, and assessed the expression of asprosin’s candidate receptors (TLR4, PTPRD, and OR4M1) in health and disease. (2) Methods: tissue culture, RNA extraction, RNA sequencing, reverse transcription-quantitative PCR, gene enrichment and in silico analyses were used for this study. (3) Results: TLR4 and PTPRD were significantly downregulated in EC when compared to healthy controls. TLR4 appeared to have a prognostic role in terms of overall survival (OS) in EC patients (i.e., higher expression, better OS). RNA sequencing revealed that asprosin affected 289 differentially expressed genes (DEGs) in Ishikawa cells and 307 DEGs in NOU-1 cells. Pathway enrichment included apoptosis, glycolysis, hypoxia, and PI3K/AKT/ mTOR/NOTCH signalling for Ishikawa-treated cells. In NOU-1, enriched processes included inflammatory response, epithelial-mesenchymal transition, reactive oxygen species pathways, and interferon gamma responses. Other signalling pathways included mTORC1, DNA repair, and p53, amongst others. (4) Conclusions: These findings underscore the importance of understanding receptor dynamics and signalling pathways in the context of asprosin’s role in EC, and provide evidence for a potential role of TLR4 as a diagnostic biomarker. Full article
(This article belongs to the Special Issue Novel Metabolism-Related Biomarkers in Cancer)
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20 pages, 3954 KB  
Article
Interpretation of the Transcriptome-Based Signature of Tumor-Initiating Cells, the Core of Cancer Development, and the Construction of a Machine Learning-Based Classifier
by Seung-Hyun Jeong, Jong-Jin Kim, Ji-Hun Jang and Young-Tae Chang
Cells 2025, 14(16), 1255; https://doi.org/10.3390/cells14161255 - 14 Aug 2025
Viewed by 689
Abstract
Tumor-initiating cells (TICs) constitute a subpopulation of cancer cells with stem-like properties contributing to tumorigenesis, progression, recurrence, and therapeutic resistance. Despite their biological importance, their molecular signatures that distinguish them from non-TICs remain incompletely characterized. This study aimed to comprehensively analyze transcriptomic differences [...] Read more.
Tumor-initiating cells (TICs) constitute a subpopulation of cancer cells with stem-like properties contributing to tumorigenesis, progression, recurrence, and therapeutic resistance. Despite their biological importance, their molecular signatures that distinguish them from non-TICs remain incompletely characterized. This study aimed to comprehensively analyze transcriptomic differences between TICs and non-TICs, identify TIC-specific gene expression patterns, and construct a machine learning-based classifier that could accurately predict TIC status. RNA sequencing data were obtained from four human cell lines representing TIC (TS10 and TS32) and non-TIC (32A and Epi). Transcriptomic profiles were analyzed via principal component, hierarchical clustering, and differential expression analysis. Gene-Ontology and Kyoto-Encyclopedia of Genes and Genomes pathway enrichment analyses were conducted for functional interpretation. A logistic-regression model was trained on differentially expressed genes to predict TIC status. Model performance was validated using synthetic data and external projection. TICs exhibited distinct transcriptomic signatures, including enrichment of non-coding RNAs (e.g., MIR4737 and SNORD19) and selective upregulation of metabolic transporters (e.g., SLC25A1, SLC16A1, and FASN). Functional pathway analysis revealed TIC-specific activation of oxidative phosphorylation, PI3K-Akt signaling, and ribosome-related processes. The logistic-regression model achieved perfect classification (area under the curve of 1.00), and its key features indicated metabolic and translational reprogramming unique to TICs. Transcriptomic state-space embedding analysis suggested reversible transitions between TIC and non-TIC states driven by transcriptional and epigenetic regulators. This study reveals a unique transcriptomic landscape defining TICs and establishes a highly accurate machine learning-based TIC classifier. These findings enhance our understanding of TIC biology and show promising strategies for TIC-targeted diagnostics and therapeutic interventions. Full article
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18 pages, 1111 KB  
Article
Latent Mamba-DQN: Improving Temporal Dependency Modeling in Deep Q-Learning via Selective State Summarization
by HanYul Ryu, Chae-Bong Sohn and Dae-Yeol Kim
Appl. Sci. 2025, 15(16), 8956; https://doi.org/10.3390/app15168956 - 14 Aug 2025
Viewed by 554
Abstract
This study proposes a novel framework, Mamba-DQN, which integrates the state space-based time-series encoder Mamba-SSM into the Deep Q-Network (DQN) architecture to improve reinforcement learning performance in dynamic environments. Conventional reinforcement learning models primarily rely on instantaneous state information, limiting their ability to [...] Read more.
This study proposes a novel framework, Mamba-DQN, which integrates the state space-based time-series encoder Mamba-SSM into the Deep Q-Network (DQN) architecture to improve reinforcement learning performance in dynamic environments. Conventional reinforcement learning models primarily rely on instantaneous state information, limiting their ability to effectively capture temporal dependencies. To address this limitation, the proposed Mamba-DQN generates latent representations that summarize temporal information from state sequences and utilizes them for both Q-value estimation and Prioritized Experience Replay (PER), thereby enhancing the adaptability of policy learning and improving sample efficiency. The Mamba-SSM offers linear computational complexity and is optimized for parallel processing, enabling real-time learning and policy updates even in environments characterized by high state transition rates. The effectiveness of the proposed framework was validated through experiments conducted in environments with strong temporal dependencies and sparse rewards. Experimental results demonstrate that Mamba-DQN achieves superior stability and efficiency in policy learning compared to conventional DQN, LSTM-DQN, and Transformer-DQN models. Full article
(This article belongs to the Section Computing and Artificial Intelligence)
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29 pages, 1407 KB  
Article
Symmetry-Driven Two-Population Collaborative Differential Evolution for Parallel Machine Scheduling in Lace Dyeing with Probabilistic Re-Dyeing Operations
by Jing Wang, Jingsheng Lian, Youpeng Deng, Lang Pan, Huan Xue, Yanming Chen, Debiao Li, Xixing Li and Deming Lei
Symmetry 2025, 17(8), 1243; https://doi.org/10.3390/sym17081243 - 5 Aug 2025
Viewed by 307
Abstract
In lace textile manufacturing, the dyeing process in parallel machine environments faces challenges from sequence-dependent setup times due to color family transitions, machine eligibility constraints based on weight capacities, and probabilistic re-dyeing operations arising from quality inspection failures, which often lead to increased [...] Read more.
In lace textile manufacturing, the dyeing process in parallel machine environments faces challenges from sequence-dependent setup times due to color family transitions, machine eligibility constraints based on weight capacities, and probabilistic re-dyeing operations arising from quality inspection failures, which often lead to increased tardiness. To tackle this multi-constrained problem, a stochastic integer programming model is formulated to minimize total estimated tardiness. A novel symmetry-driven two-population collaborative differential evolution (TCDE) algorithm is then proposed. It features two symmetrically complementary subpopulations that achieve a balance between global exploration and local exploitation. One subpopulation employs chaotic parameter adaptation through a logistic map for symmetrically enhanced exploration, while the other adjusts parameters based on population diversity and convergence speed to facilitate symmetry-aware exploitation. Moreover, it also incorporates a symmetrical collaborative mechanism that includes the periodic migration of top individuals between subpopulations, along with elite-set guidance, to enhance both population diversity and convergence efficiency. Extensive computational experiments were conducted on 21 small-scale (optimally validated via CVX) and 15 large-scale synthetic datasets, as well as 21 small-scale (similarly validated) and 20 large-scale industrial datasets. These experiments demonstrate that TCDE significantly outperforms state-of-the-art comparative methods. Ablation studies also further verify the critical role of its symmetry-based components, with computational results confirming its superiority in solving the considered problem. Full article
(This article belongs to the Special Issue Meta-Heuristics for Manufacturing Systems Optimization, 3rd Edition)
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20 pages, 681 KB  
Review
Unraveling Glioblastoma Heterogeneity: Advancing Immunological Insights and Therapeutic Innovations
by Joshua H. Liu, Maksym Horiachok, Santosh Guru and Cecile L. Maire
Brain Sci. 2025, 15(8), 833; https://doi.org/10.3390/brainsci15080833 - 2 Aug 2025
Viewed by 1100
Abstract
Glioblastoma (GBM) remains one of the most aggressive and treatment-resistant brain tumors, largely due to its profound intratumoral heterogeneity and immunosuppressive microenvironment. Various classifications of GBM subtypes were created based on transcriptional and methylation profiles. This effort, followed by the development of new [...] Read more.
Glioblastoma (GBM) remains one of the most aggressive and treatment-resistant brain tumors, largely due to its profound intratumoral heterogeneity and immunosuppressive microenvironment. Various classifications of GBM subtypes were created based on transcriptional and methylation profiles. This effort, followed by the development of new technology such as single-nuclei sequencing (snRNAseq) and spatial transcriptomics, led to a better understanding of the glioma cells’ plasticity and their ability to transition between diverse cellular states. GBM cells can mimic neurodevelopmental programs to resemble oligodendrocyte or neural progenitor behavior and hitchhike the local neuronal network to support their growth. The tumor microenvironment, especially under hypoxic conditions, drives the tumor cell clonal selection, which then reshapes the immune cells’ functions. These adaptations contribute to immune evasion by progressively disabling T cell and myeloid cell functions, ultimately establishing a highly immunosuppressive tumor milieu. This complex and metabolically constrained environment poses a major barrier to effective antitumor immunity and limits the success of conventional therapies. Understanding the dynamic interactions between glioma cells and their microenvironment is essential for the development of more effective immunotherapies and rational combination strategies aimed at overcoming resistance and improving patient outcomes. Full article
(This article belongs to the Special Issue Recent Advances in Translational Neuro-Oncology)
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31 pages, 29045 KB  
Article
Earliest Cambrian Carbonate Platform Evolution, Environmental Change, and Organic Matter Accumulation in the Northwestern Yangtze Block, South China
by Jincheng Liu, Qingchun Jiang, Yan Zhang, Jingjiang Liu, Yifei Ai, Pengzhen Duan and Guangyou Zhu
Minerals 2025, 15(8), 812; https://doi.org/10.3390/min15080812 - 31 Jul 2025
Viewed by 421
Abstract
The earliest Cambrian (ca., 538.8–524.8 Ma) was an important period in geological history witnessing significant environmental change, during which organic-rich facies were developed in the Yangtze Platform, South China. However, the contemporaneous paleogeographic and stratigraphic framework within which the environmental change and organic [...] Read more.
The earliest Cambrian (ca., 538.8–524.8 Ma) was an important period in geological history witnessing significant environmental change, during which organic-rich facies were developed in the Yangtze Platform, South China. However, the contemporaneous paleogeographic and stratigraphic framework within which the environmental change and organic matter accumulation took place remains poorly understood. We investigate this based on facies, sequence stratigraphic, and geochemical analyses of the lowermost Cambrian Maidiping and Zhujiaqing formations in the northwestern Yangtze Block. The results show that the terminal Ediacaran rimmed platform changed into a foredeep carbonate ramp and backbulge basin after the onset of the earliest Cambrian transgression. Across the Ediacaran–Cambrian boundary, the shallow-marine redox condition rapidly transitioned from relative euxinia to an oxygen-rich state. During the late transgression to highstand normal regression, the foredeep carbonate ramp expanded to the cratonic interior, and nutrients brought by intensified continental weathering and upwelling promoted significant phytoplankton proliferation, an increase in oxygen level and primary productivity, and then organic matter enrichment. During the forced regression, the carbonate ramp gradually changed into a rimmed platform. The weakening continental weathering and expanding anoxic area during the forced to lowstand normal regression led to the significant organic carbon burial in the foredeep basin. Full article
(This article belongs to the Special Issue Organic Petrology and Geochemistry: Exploring the Organic-Rich Facies)
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17 pages, 4030 KB  
Article
Effects of Cultivation Modes on Soil Protistan Communities and Its Associations with Production Quality in Lemon Farmlands
by Haoqiang Liu, Hongjun Li, Zhuchun Peng, Sichen Li and Chun Ran
Plants 2025, 14(13), 2024; https://doi.org/10.3390/plants14132024 - 2 Jul 2025
Viewed by 460
Abstract
Citrus is one of the most widely consumed fruits in the world, and its cultivation industry continues to develop rapidly. However, the roles of soil protistan communities during citrus growth are not yet fully understood, despite the potential significance of these communities to [...] Read more.
Citrus is one of the most widely consumed fruits in the world, and its cultivation industry continues to develop rapidly. However, the roles of soil protistan communities during citrus growth are not yet fully understood, despite the potential significance of these communities to the health and quality of citrus. In this study, we examined the soil properties and protistan communities in Eureka lemon farmlands located in Chongqing, China, during the flowering and fruiting stages of cultivation, both in greenhouse and open-field settings. In general, the majority of the measured soil properties (including nutrients and enzyme activities) exhibited higher values in open-field farmlands in comparison to those observed in greenhouse counterparts. According to the results of high-throughput sequencing based on the V9 region of eukaryotic 18S rRNA gene, the diversity of soil protistan communities was also higher in open-field farmlands, and both lemon growth stage and cultivation modes showed significant effects on soil protistan compositions. The transition from traditional agricultural practices to greenhouse farming resulted in a significant transformation of the soil protistan community. This transformation manifested as a shift towards a state characterized by diminished nutrient cycling capabilities. This decline was evidenced by an increase in phototrophs (Archaeplastida) and a concomitant decrease in consumers (Stramenopiles and Alveolata). Community assembly analysis revealed deterministic processes that controlled the succession of soil protistan communities in lemon farmlands. It has been established that environmental associations have the capacity to recognize nitrogen in soils, thereby providing a deterministic selection process for protistan community assembly. Furthermore, a production index was calculated based on 12 quality parameters of lemons, and the results indicated that lemons from greenhouse farms exhibited a lower quality compared to those from open fields. The structure equation model revealed a direct correlation between the quality of lemons and the cultivation methods employed, as well as the composition of soil protists. The present study offers insights into the mechanisms underlying the correlations between the soil protistan community and lemon quality in response to changes in the cultivation modes. Full article
(This article belongs to the Special Issue Innovative Techniques for Citrus Cultivation)
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19 pages, 11390 KB  
Article
Single-Nucleus Transcriptomics Reveals Glial Metabolic–Immune Rewiring and Intercellular Signaling Disruption in Chronic Migraine
by Shuangyuan Hu, Zili Tang, Shiqi Sun, Lu Liu, Yuyan Wang, Longyao Xu, Jing Yuan, Ying Chen, Mingsheng Sun and Ling Zhao
Biomolecules 2025, 15(7), 942; https://doi.org/10.3390/biom15070942 - 28 Jun 2025
Viewed by 946
Abstract
Chronic migraine (CM) is a debilitating neurological disorder, yet the glial-specific mechanisms underlying its pathophysiology in the trigeminal nucleus caudalis (TNC)—a critical hub for craniofacial pain processing—remain poorly understood. Here, we employed single-nucleus RNA sequencing (snRNA-seq) to resolve cell-type-specific transcriptional landscapes in a [...] Read more.
Chronic migraine (CM) is a debilitating neurological disorder, yet the glial-specific mechanisms underlying its pathophysiology in the trigeminal nucleus caudalis (TNC)—a critical hub for craniofacial pain processing—remain poorly understood. Here, we employed single-nucleus RNA sequencing (snRNA-seq) to resolve cell-type-specific transcriptional landscapes in a nitroglycerin (NTG)-induced CM rat model, with a particular focus on microglia and astrocytes. We identified 19 transcriptional clusters representing nine major cell types, among which reactive microglia (NTG-Mic) and astrocytes (NTG-Asts) were markedly expanded. The NTG-Mic displayed a glycolysis-dominant, complement-enriched state, whereas the NTG-Asts exhibited concurrent activation of amino acid transport and cytokine signaling pathways. Pseudotime trajectory analysis revealed bifurcated glial activation paths, with NTG driving both cell types toward terminal reactive states. Intercellular communication inference uncovered suppressed homeostatic interactions (e.g., CSF1-CSF1R) alongside enhanced proinflammatory signaling (e.g., FGF1-FGFR2, PTN-SDC4), particularly affecting neuron–glia and glia–glia crosstalk. Together, these findings define a high-resolution atlas of glial reprogramming in CM, implicating state-specific metabolic–immune transitions and dysregulated glial communication as potential targets for therapeutic intervention. Full article
(This article belongs to the Section Molecular Medicine)
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