Search Results (116)

The cellulose-binding domain and inter-domain linker play crucial roles in the degradation of crystalline cellulose by cellulases. Although significant differences exist in the degradation efficiency of cellobiohydrolase I (CBH I) derived from different fungal sources, the relationship between this efficiency diversity and variations in the non-catalytic region remains poorly understood. In this study, we found significant differences in the length and amino acid composition of the linker region of CBH I derived from Sordariomycetes and Eurotiomycetes. By replacing the non-catalytic region of Penicillium oxalicum CBH I with the corresponding segment from Trichoderma reesei, the cellulose conversion efficiency of the extracellular enzyme system doubled under the same protein dosage, and the adsorption of CBH I onto cellulose was improved. While replacing only the cellulose-binding domain improved the degradation efficiency of the enzyme system, additional replacement of the linker region resulted in greater enhancement. Improved degradation efficiency due to non-catalytic region replacement was observed under various conditions, including higher cellulose substrate concentration, reduced cellulose crystallinity, use of pretreated straw as a substrate, and degradation at physiological temperature. These findings provide novel insights into the molecular mechanisms underlying crystalline cellulose degradation by filamentous fungi. Full article

Fungal cell walls, composed of polysaccharides and proteins, play critical roles in adaptation, cell division, and protection against environmental stress. Their polyglucan components are continuously remodeled by various types of glycosyl hydrolases (GHs) and transferases (GTs). In Saccharomyces cerevisiae and other ascomycetes, enzymes of the Dfg5 subfamily, which belong as GTs to the GH76 family, cleave an α1,4 linkage between glucosamine and mannose to facilitate covalent linkage of GPI-anchored proteins to the cell wall’s polyglucans. In contrast, the functions of other fungal GH76 subfamilies are not understood. We characterized CtGH76 from the sordariomycete Chaetomium thermophilum, a member of the Fungi/Bacteria-mixed GH76 subfamily, revealing conserved structural features and functional divergence within the GH76 family. Notably, our structural characterization by X-ray crystallography combined with glycan fragment screening indicated that CtGH76 can recognize GPI-anchors like members of the Dfg5 subfamily but shows a broader promiscuity toward other glycans with central α1,6-mannobiose motifs due to the presence of an elongated glycan-binding canyon. These findings provide new insights into GH76 enzyme diversity and fungal cell wall maturation. Full article

Anthropogenic nitrogen (N) enrichment alters soil biotic (e.g., microbial metabolism) and abiotic (e.g., pH and mineralogy) properties, substantially affecting the persistence and storage of soil organic carbon (SOC). However, the response of relatively persistent mineral-associated organic carbon (MAOC) to N enrichment and the underlying mechanisms are not well understood, leading to significant uncertainties regarding SOC stability under continuous N input. Based on a 15-year field N fertilisation experiment (0, 28.5, 60.0, 72.0 g N m⁻² yr⁻¹), we studied the responses of MAOC to N input and the associated changes in soil mineralogy and microbiology. N fertilisation significantly reduced MAOC content by 16.0%. The loss of MAOC was primarily attributed to soil acidification (pH decreased from 6.4 to 4.2), leading to exchangeable calcium (Ca) leaching and loss of Ca-bound organic carbon by 37.9% on average. Furthermore, N-induced shifts in dominant microbial keystone taxa from K-strategists (e.g., Actinobacteriota and Sordariomycetes) to r-strategists (e.g., Subgroups 4 and 6 Acidobacteriota) impeded the formation of MAOC through the reduction of microbial carbon use efficiency and oxidase activity (e.g., phenol oxidases and peroxidases). These results suggest that keystone taxa play crucial roles in regulating carbon metabolism and are responsible for MAOC reduction. Moreover, our data pinpoint the importance of Ca leaching for SOC destabilisation, particularly in near-neutral and neutral soils. Full article

The genus Macgarvieomyces (Magnaporthales, Sordariomycetes, Ascomycota) currently includes three species, which are associated with leaf spots on plants belonging to the Cyperaceae and Juncaceae families and are known only in Europe and New Zealand. During a comprehensive survey conducted between 2020 and 2022 targeting host plants from these families across various regions of Iran, six novel species of Macgarvieomyces—M. caspica, M. cyperi, M. junci-acuti, M. juncigenus, M. salkadehensis, and M. schoeni—were uncovered. These species were identified based on detailed morphological characterizations and multi-locus phylogenetic analyses using ITS-rDNA, RPB1, ACT, and CAL gene regions. This study provides thorough descriptions and illustrations of the new taxa, including information on their morphology, ecological preferences, and geographic distribution. The phylogenetic relationships among the species are also discussed. This work significantly enhances the known diversity of Macgarvieomyces associated with Cyperaceae and Juncaceae, expands their geographic distribution, and underscores the value of integrating morphological and molecular data in fungal taxonomy; accordingly, the findings of this study lay the groundwork for future ecological and evolutionary studies of this genus. Full article

Soil carbon dynamics and microbial communities are critical to soil health. However, the specific effects of mulching on soil microbial community and carbon dynamics in semi-arid rainfed regions remain insufficiently understood. This study aims to identify optimal mulching practices that promote soil carbon sequestration and enhance soil microbial functionality. Mulching treatments were applied in furrows before maize sowing, including black plastic film (TB), white plastic film (TW), straw mulching without sowing (TC), and straw mulching with sowing (TG), and were compared with flat sowing without mulching (TN). Results revealed that TG treatment promoted soil carbon dynamics by increasing total carbon (9%), organic carbon (19%), microbial biomass carbon (100%), easily oxidized carbon (10%), particulate-associated carbon (77%), carbon stability index (7%), active carbon fraction (45%), dissolved carbon proportion (30%), and microbial quotient (34%) compared to TN. A higher abundance and composition of bacterial communities were observed compared to fungal communities. The highest bacterial abundance of Kaistobacter, iii1_15, Sinobacteraceae, and Xanthomonadaceae, and fungal abundance of unspecified fungi, Laiosphaeriaceae, and Sordariomycetes, with the dominant aerobic respiration metabolic pathway involved in organic matter decomposition, were observed in TG and TC. The results indicated that TG treatment most effectively promoted carbon fractions and microbial activity that could strengthen soil health. Full article

Reducing the use of chemical inputs (fertilizers, pesticides) in agriculture while maintaining crop productivity is the main challenge facing sub-Saharan African family farming systems. The use of effective microorganisms (EM) is among the various innovative approaches for minimizing chemical inputs and the environmental impact of agricultural production and protecting soil health while enhancing crop yields and improving food security. This study sought to characterize the microbial biodiversity of local beneficial microorganisms (BMs) products from locally fermented forest litter and investigate their ability to enhance tomato plant growth and development. Beneficial microorganisms (BMs) were obtained by anaerobic fermentation of forest litter collected in four agroecological regions of Senegal mixed with sugarcane molasses and various types of carbon sources (groundnut shells, millet stovers, and rice bran in different proportions). The microbial community composition was analyzed using next-generation rDNA sequencing, and their effects on tomato growth traits were tested in greenhouse experiments. Results show that regardless of the litter geographical collection site, the dominant bacterial taxa in the BMs belonged to the phyla Firmicutes (27.75–97.06%) and Proteobacteria (2.93–72.24%). Within these groups, the most prevalent classes were Bacilli (14.41–89.82%), α-proteobacteria (2.83–72.09%), and Clostridia (0.024–13.34%). Key genera included Lactobacillus (13–65.83%), Acetobacter (8.91–72.09%), Sporolactobacillus (1.40–43.35%), and Clostridium (0.08–13.34%). Fungal taxa were dominated by the classes Leotiomycetes and Sordariomycetes, with a prevalence of the acidophilic genus Acidea. Although microbial diversity is relatively uniform across samples, the relative abundance of microbial taxa is influenced by the litter’s origin. This is illustrated by the PCoA analysis, which clusters microbial communities based on their litter source. Greenhouse experiments revealed that five BMs (DK-M, DK-G, DK-GM, NB-R, and NB-M) significantly (p < 0.05) enhanced tomato growth traits, including plant height (+10.75% for DK-G and +9.44% for NB-R), root length (+56.84–62.20%), root volume (+84.32–97.35%), root surface area (+53.16–56.72%), and both fresh and dry shoot biomass when compared to untreated controls. This study revealed that forest-fermented litter products (BMs), produced using litter collected from various regions in Senegal, contain beneficial microorganisms known as plant growth-promoting microorganisms (PGPMs), which enhanced tomato growth. These findings highlight the potential of locally produced BMs as an agroecological alternative to inorganic inputs, particularly within Senegal’s family farming systems. Full article

Plastic, a ubiquitous part of our daily lives, has become a global necessity, with annual production exceeding 300 million tons. However, the accumulation of synthetic polymers in our environment poses a pressing global challenge. To address this urgent issue, fungi have emerged as potential agents for plastic degradation. In our previous manuscript, ‘A Review of the Fungi That Degrade Plastic’, we explored the taxonomic placement of plastic-degrading fungi across three main phyla: Ascomycota, Basidiomycota, and Mucoromycota. In this review, we built upon that foundation and aimed to further explore the taxonomic relationships of these fungi in a comprehensive and detailed manner, leaving no stone unturned. Moreover, we linked metabolic activity and enzyme production of plastic-degrading fungi to their taxonomy and summarized a phylogenetic tree and a detailed table on enzyme production of plastic-degrading fungi presented here. Microbial enzymes are key players in polymer degradation, operating intra-cellularly and extra-cellularly. Fungi, one of the well-studied groups of microbes with respect to plastic degradation, are at the forefront of addressing the global issue of plastic accumulation. Their unique ability to hydrolyze synthetic plastic polymers and produce a wide range of specific enzymes is a testament to their potential. In this review, we gather and synthesize information concerning the metabolic pathways of fungi involved in the degradation of plastics. The manuscript explores the diverse range of specific enzymes that fungi can produce for plastic degradation and the major pathways of plastic metabolism. We provide a listing of 14 fungal enzymes (Esterase, Cutinase, Laccase, Peroxidases, Manganese peroxidase, Lignin peroxidase, Oxidoreductases, Urease, Protease, Lipase, Polyesterase, Dehydrogenase, Serine hydrolase, and PETase) involved in pathways for plastic degradation alongside the relevant fungi known to produce these enzymes. Furthermore, we integrate the fungi’s enzyme-producing capabilities with their taxonomy and phylogeny. Taxonomic and phylogenetic investigations have pinpointed three primary fungal classes (Eurotiomycetes, Sordariomycetes (Ascomycota), and Agaricomycetes (Basidiomycota)) as significant plastic degraders that produce the vital enzymes mentioned earlier. This paper provides a foundational resource for recognizing fungal involvement in the biodegradation of synthetic polymers. It will ultimately advance fungal biotechnology efforts to address the global issue of plastic accumulation in natural environments. Full article

This study explored how potted treatments (with and without Scleroderma bovista inoculation) shape rhizosphere microbial diversity in hazel across five soils using split-root cultivation. Three treatments (control, split-root, split-root with S. bovista) were analyzed for root growth and microbial dynamics. S. bovista inoculation consistently enhanced root parameters (number, tips) in all soils. Potted treatments (with and without S. bovista inoculation) altered microbial features (OTU/ASV), with only 0.9–3.3% of features remaining unchanged. At the class level, potting increased Agaricomycetes abundance while reducing Sordariomycetes, a trend amplified by S. bovista. Potting decreased species richness estimates (ACE and Chao1), while both treatments lowered diversity index (Shannon index). Potted treatments without S. bovista inoculation drove stronger shifts in species composition than inoculation. Findings reveal potting and S. bovista synergistically recruit symbiotic fungi via root exudates, establishing disease-suppressive communities that selectively inhibit pathotrophic fungi (particularly plant pathogen Coniothyrium and fungal parasite Cladobotryum) while roughly maintaining non-pathogenic saprotrophic microbes essential for organic matter decomposition. This work provides insights for optimizing hazel orchard management and ectomycorrhizal agent development. Full article

Hypocreales is one of the largest orders within the class Sordariomycetes and is renowned for its diversity of lifestyles, encompassing plant, insect, and human pathogens, as well as endophytes, parasites, and saprobes. In this study, we focused on saprobic hypocrealean fungi isolated from rice in northern Thailand. Species identification was conducted using morphological characteristics and multilocus phylogenetic analyses, including the internal transcribed spacer region (ITS), 28S large subunit nuclear ribosomal DNA (LSU), translation elongation factor 1–alpha (tef1-α), RNA polymerase II second-largest subunit (rpb2), and calmodulin (cmdA). This research confirmed the presence of 14 species of hypocrealean taxa, viz. Fusarium (9), Ochronectria (1), Sarocladium (2), Trichothecium (1), and Waltergamsia (1). Among these were two new species (Fusarium chiangraiense and F. oryzigenum), four new host records (Fusarium kotabaruense, Ochronectria thailandica, Sarocladium bactrocephalum, and Waltergamsia fusidioides), and three new geographical records (Fusarium commune, F. guilinense, and F. hainanese). Full article

In recent years, Castanopsis carlesii, a keystone species in southern China’s forest ecosystems with high ecological and economic importance, has faced growing challenges from severe nut rot diseases. Gnomoniopsis (Gnomoniaceae, Diaporthales, Sordariomycetes, Ascomycota) represents a significant fungal genus that causes leaf spots, branch cankers, and fruit rot diseases. In this study, rotten nuts of C. carlesii were collected from Fujian Province, and fungal isolates were obtained using the tissue isolation method. Morphological characterization and molecular phylogenetic analysis, based on the combined sequences of the internal transcribed spacer region of rDNA (ITS), the translation elongation factor 1-alpha (tef1) gene, and the partial beta-tubulin (tub2) gene were used to identify these isolates. As a result, new isolates from diseased nuts of C. carlesii formed a distinct clade with Gnomoniopsis, and morphologically differentiated from the other species; hence, G. flava sp. nov. is proposed herein. Furthermore, pathogenicity tests involving three isolates of G. flava were conducted on healthy nuts of C. carlesii, confirming its role as the causal agent of this new plant disease. This study not only advances our understanding of species diversity within Gnomoniopsis but also lays the groundwork for developing control strategies for C. carlesii nut rot disease. Full article

Soil fungi in mangroves are diverse and crucial for organic matter decomposition and element cycling. However, the drivers influencing network complexity and the stability of fungal communities across different mangrove soil habitats remain unclear. This study investigated the main factors driving the composition, diversity, complexity, and stability of fungal communities in clay loam and sandy soils in mangrove ecosystems. Results showed that Dothideomycetes and Sordariomycetes dominated in clay loam and sandy soils, respectively. Sandy soils exhibited higher alpha diversity than clay loam. Beta diversity analysis revealed significant differences in the fungal community structure between the two soil types. Network analysis demonstrated higher complexity and stability of fungal communities in clay loam than in sandy soil. Spearman’s correlation analysis revealed that NH₄⁺-N and total nitrogen were the main factors affecting complexity and stability in clay loam, respectively. Partial least squares path modeling demonstrated that alpha diversity and soil properties were closely linked to the complexity and stability of fungal communities in clay loam, whereas beta diversity was the primary driver in sandy soil. Our study enhances the understanding of the mechanisms that maintain fungal diversity and community stability in mangrove ecosystems, with important implications for restoring vegetation in degraded areas. Full article

Red mud and phosphogypsum are two typical industrial by-products. The preparation of red mud/phosphogypsum-based artificial soils offers a promising novel solution to the efficient synergistic disposal of them. Fungi, as key drivers, can promote the continuous development and ecological improvement of artificial soils. This study is first to report the characteristics of fungal communities in three artificial soils after one year of incubation. The preliminary formation of fungal communities (with relatively low diversity) resulted in a total of 3 fungal phyla, 81 fungal genera, and 144 operational taxonomic units (OTUs) in artificial soils. Ascomycota was the dominant fungal phylum in each artificial soil (>99.5%), and the high-abundance fungal genera included Unclassified_c_Sordariomycetes, Unclassified_o_Sordariales, Emericellopsis, Kernia, Unclassified_f_Nectriaceae, Ramophialophora, Schizothecium, and Iodophanus. There were significant differences among the three artificial soils in the compositions of fungal genera, which affected material cycling, ecological succession, and soil development and maturation to varying extents. According to the FUNGuild prediction of fungal communities, saprotrophic fungi (such as undefined saprotroph, dung saprotroph–undefined saprotroph, and dung saprotroph) played dominant roles in promoting the degradation and humification of organic matter and the cycling of carbon in artificial soils. Fungal communities in the three artificial soils had strong correlations with many environmental factors (such as pH, organic matter, available nitrogen, total nitrogen, available phosphorous, sucrase, urease, acid phosphatase, alkaline phosphatase, and catalase), indicating significant interactions between them. This is not only conducive to the continuous optimization of the structure of fungal communities in artificial soils but also promotes the balanced and homogeneous distribution of various substances, promoting continuous soil development and maturation and gradual improvement in its ecological functions. This study provides an important scientific basis for clarifying the mechanisms of mycogenesis during the continuous development and maturation of artificial soils. Full article

Tar spot is a prevalent fungal disease characterized by shiny black spots on the leaves, stems, and fruits of various plants. It is typically caused by members of the family Phyllachoraceae, which consists of biotrophic and obligate plant parasitic fungi. During field investigations of tar spot fungi in Sichuan Province, China, 70 fungal samples associated with tar spots belonging to the family Poaceae were collected from 13 different locations. Through morphological studies and multi-locus phylogenetic analysis of combined ITS, SSU, and LSU datasets, the collected samples were classified into eight Phyllachora species. Among these, five were identified as new species (Phyllachora cylindricae, P. festucae, P. luzhouensis, P. palmifoliae, and P. wenchuanensis), and two represented new host records (P. chongzhouensis, P. panicicola). The new species are accompanied by descriptions and illustrations, while their characteristics are discussed in relation to comparable taxa. Additionally, P. yuanjiangensis is synonymized under P. xinpingensis. These findings enhance our understanding of tar spot fungi in Sichuan and, given that Phyllachora species are important pathogens of plants in the Poaceae family, establish a foundation for further research to better understand their potential impacts on agriculture and the local ecology. Full article

Munition disposal practices have significant effects on microbial composition and overall soil health. Explosive soil contamination can disrupt microbial communities, leading to microbial abundance and richness changes. This study investigates the microbial diversity of soils and roots from sites with a history of ammunition disposal, aiming to identify organisms that may play a role in bioremediation. Soil and root samples were collected from two types of ammunition disposal (through open burning and open detonation) and unpolluted sites in Machachi, Ecuador, over two years (2022 and 2023). High-throughput sequencing of the 16S rRNA gene (for bacteria) and the ITS region (for fungi and plants) was conducted to obtain taxonomic profiles. There were significant variations in the composition of bacteria, fungi, and plant communities between polluted and unpolluted sites. Bacterial genera such as Pseudarthrobacter, Pseudomonas, and Rhizobium were more abundant in roots, while Candidatus Udaeobacter dominated unpolluted soils. Fungal classes Dothideomycetes and Sordariomycetes were prevalent across most samples, while Leotiomycetes and Agaricomycetes were also highly abundant in unpolluted samples. Plant-associated reads showed a higher abundance of Poa and Trifolium in root samples, particularly at contaminated sites, and Alchemilla, Vaccinium, and Hypericum were abundant in unpolluted sites. Alpha diversity analysis indicated that bacterial diversity was significantly higher in unpolluted root and soil samples, whereas fungal diversity was not significantly different among sites. Redundancy analysis of beta diversity showed that site, year, and sample type significantly influenced microbial community structure, with the site being the most influential factor. Differentially abundant microbial taxa, including bacteria such as Pseudarthrobacter and fungi such as Paraleptosphaeria and Talaromyces, may contribute to natural attenuation processes in explosive-contaminated soils. This research highlights the potential of certain microbial taxa to restore environments contaminated by explosives. Full article

Synthetic microbial community (SynCom) application is efficient in promoting crop yield and soil health. However, few studies have been conducted to enhance pepper growth via modulating rhizosphere microbial communities by SynCom application. This study aimed to investigate how SynCom inoculation at the seedling stage impacts pepper growth by modulating the rhizosphere microbiome using high-throughput sequencing technology. SynCom inoculation significantly increased shoot height, stem diameter, fresh weight, dry weight, chlorophyll content, leaf number, root vigor, root tips, total root length, and root-specific surface area of pepper by 20.9%, 36.33%, 68.84%, 64.34%, 29.65%, 27.78%, 117.42%, 35.4%, 21.52%, and 39.76%, respectively, relative to the control. The Chao index of the rhizosphere microbial community and Bray–Curtis dissimilarity of the fungal community significantly increased, while Bray–Curtis dissimilarity of the bacterial community significantly decreased by SynCom inoculation. The abundances of key taxa such as Scedosporium, Sordariomycetes, Pseudarthrobacter, norankSBR1031, and norankA4b significantly increased with SynCom inoculation, and positively correlated with indices of pepper growth. Our findings suggest that SynCom inoculation can effectively enhance pepper growth and regulate root morphology by regulating rhizosphere microbial communities and increasing key taxa abundance like Sordariomycetes and Pseudarthrobacter, thereby benefiting nutrient acquisition, resistance improvement, and pathogen resistance of crops to ensure sustainability. Full article